Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006267

Physical Location & Seq

Genomic Coordinates Reverse (-)

34376656 .. 34381029

Gene Structure 4374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G025610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCAGTACGTACAACTCCTAGGAGTACTACAGAGCTTAAAGGGCATTACATCAGGCTCCGTGGCTTCTCAATGCGTATTGAAATTGTATGAAGCTGGAGAAATTCGTATAATCAACAAAAGTGAGACACAAGAGCTAGCACAATATGGAGCACATTTCATCACCAACACTGATCAACCACAATCTTGCAATTTTGCCTCTTTTATTCCTTATGGAGAGGATACTCCTTTGCAGAGAGCAGAATGGATCAAGTACTTGGGAGTGTTTGCAAATGCTGAAACCAGAGCCAATCAAGTATACAATGTTGTTAGAGAGAATTATCAATGTTTGCTCAATCTCTCAAAAAGCAGAACATCGTTCAAACCAACTGTAGCATGGATGCAGTATGATAATGGTATATGGTCTTTCACAACGGAAATATACAAGTTGAAGTATGTGGAAGACGCAGGTGGTGAGAATGTGGATGCTTCTATCAACAAAATTACCTATAACATCTCTAATCCGGAGGATTTGGATGAATTGCATGCCATCCTTTGCACCGTGGATGTGGCTATTGACGAAACATTTACTTCAGATCCAGCTGTTTACAATACATCAATATTTCTTCAAAACATAAAAGTGGAAGATCATTCTTGTTTTGTTTTTCTCTCTAACCAAAGCTTATGGAGATACGATAAAAGAATTCAAAACTCAACTGCGCTTGACTGGTACAATGGAGCAGTCTCCCAGCCACAGTTGGTTCTAGCAGATTTTATTGAAGTTTTATTCCCTACTGGAAACTATACAACAACATATTTCAGAAATATAGCAAAGGATGAAGGAGTTGTGCAGATTACTTCTGAAATGTGTGATAGGGATGTCTCCTTAGCAATGGAGCCAGCAATAACAGTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

298

Amino Acids

33.69

Weight (kDa)

4.58

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65900 AT1G65900
fragaria_vesca	FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290
malus_domestica	MD17G1286700.v1.1
prunus_persica	Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1
pyrus_communis	pycom17g27010
rosa_chinensis	RchiOBHm_Chr3g0488721
rosa_laevigata	RLG00000022928
rosa_multiflora	Rmu_sc0000265.1_g000020 Rmu_sc0001208.1_g000077
rosa_roxburghii	Rroxscaffold_6G00393930
rosa_rugosa	Rorug03G0241000 Rorug03G0241100
rosa_samantha	Rh3AG289300 Rh3BG326100 Rh3CG323800 Rh3DG322100
rosa_wichuraiana	Rw3G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	437
Acc36I	ACCTGC	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	297
AccIII	TCCGGA	1 cut(s)	502
AclWI	GGATC	2 cut(s)	254, 569
AcsI	RAATTY	2 cut(s)	102, 681
AcuI	CTGAAG	1 cut(s)	555
AfaI	GTAC	5 cut(s)	8, 12, 27, 254, 710
AgsI	TTSAA	6 cut(s)	82, 361, 430, 608, 686, 758
AluBI	AGCT	5 cut(s)	36, 95, 136, 581, 660
AluI	AGCT	5 cut(s)	36, 95, 136, 581, 660
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	3 cut(s)	119, 727, 865
AlwI	GGATC	2 cut(s)	254, 569
Aor13HI	TCCGGA	1 cut(s)	502
ApoI	RAATTY	2 cut(s)	102, 681
AspA2I	CCTAGG	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	700
AsuHPI	GGTGA	2 cut(s)	154, 464
AsuNHI	GCTAGC	1 cut(s)	136
AvrII	CCTAGG	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	154
BccI	CCATC	1 cut(s)	536
BciVI	GTATCC	1 cut(s)	214
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	3 cut(s)	119, 727, 865
BfaI	CTAG	3 cut(s)	20, 137, 743
BfmI	CTRYAG	2 cut(s)	29, 369
BfuAI	ACCTGC	1 cut(s)	437
BfuI	GTATCC	1 cut(s)	214
BlnI	CCTAGG	1 cut(s)	19
BmcAI	AGTACT	2 cut(s)	27, 254
BmiI	GGNNCC	2 cut(s)	58, 876
BmsI	GCATC	2 cut(s)	369, 454
BmtI	GCTAGC	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	447
BpmI	CTGGAG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	865
BsaAI	YACGTR	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	19, 60, 540
BsaWI	WCCGGW	1 cut(s)	502
Bse1I	ACTGG	2 cut(s)	710, 778
Bse3DI	GCAATG	1 cut(s)	876
BseAI	TCCGGA	1 cut(s)	502
BseDI	CCNNGG	3 cut(s)	19, 60, 540
BseGI	GGATG	7 cut(s)	384, 469, 520, 528, 550, 820, 862
BseMI	GCAATG	1 cut(s)	876
BseNI	ACTGG	2 cut(s)	710, 778
BseYI	CCCAGC	1 cut(s)	726
BsgI	GTGCAG	1 cut(s)	848
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	503
BsmAI	GTCTC	3 cut(s)	119, 727, 865
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	4 cut(s)	172, 246, 574, 625
BspEI	TCCGGA	1 cut(s)	502
BspLI	GGNNCC	2 cut(s)	58, 876
BspMI	ACCTGC	1 cut(s)	437
BspOI	GCTAGC	1 cut(s)	140
BspPI	GGATC	2 cut(s)	254, 569
BsrDI	GCAATG	1 cut(s)	876
BsrI	ACTGG	2 cut(s)	710, 778
BssECI	CCNNGG	3 cut(s)	19, 60, 540
BssMI	GATC	4 cut(s)	172, 246, 574, 625
BssNAI	GTATAC	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	19
Bst1107I	GTATAC	1 cut(s)	298
Bst4CI	ACNGT	4 cut(s)	370, 541, 735, 889
BstBAI	YACGTR	1 cut(s)	10
BstC8I	GCNNGC	3 cut(s)	138, 525, 879
BstDEI	CTNAG	1 cut(s)	865
BstDSI	CCRYGG	2 cut(s)	60, 540
BstF5I	GGATG	7 cut(s)	384, 469, 520, 528, 550, 820, 862
BstHHI	GCGC	1 cut(s)	700
BstKTI	GATC	4 cut(s)	175, 249, 577, 628
BstMAI	GTCTC	3 cut(s)	119, 727, 865
BstMBI	GATC	4 cut(s)	172, 246, 574, 625
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	527
BstSFI	CTRYAG	2 cut(s)	29, 369
BstSNI	TACGTA	1 cut(s)	10
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BstZ17I	GTATAC	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	214
BtgI	CCRYGG	2 cut(s)	60, 540
BtsCI	GGATG	7 cut(s)	384, 469, 520, 528, 550, 820, 862
BtsIMutI	CAGTG	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	437
Cac8I	GCNNGC	3 cut(s)	138, 525, 879
CfoI	GCGC	1 cut(s)	700
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	5 cut(s)	7, 11, 26, 253, 709
CviAII	CATG	2 cut(s)	375, 524
CviQI	GTAC	5 cut(s)	7, 11, 26, 253, 709
DdeI	CTNAG	1 cut(s)	865
DpnI	GATC	4 cut(s)	174, 248, 576, 627
DpnII	GATC	4 cut(s)	172, 246, 574, 625
Eco105I	TACGTA	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	555
EcoRI	GAATTC	1 cut(s)	681
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	2 cut(s)	378, 527
FatI	CATG	2 cut(s)	374, 523
FbaI	TGATCA	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	297
FokI	GGATG	7 cut(s)	391, 476, 515, 527, 557, 827, 869
FspBI	CTAG	3 cut(s)	20, 137, 743
GlaI	GCGC	1 cut(s)	699
GsaI	CCCAGC	1 cut(s)	730
GsuI	CTGGAG	1 cut(s)	117
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	700
Hin1II	CATG	2 cut(s)	378, 527
Hin6I	GCGC	1 cut(s)	698
HinP1I	GCGC	1 cut(s)	698
HindIII	AAGCTT	1 cut(s)	658
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	2 cut(s)	154, 464
Hpy166II	GTNNAC	2 cut(s)	298, 586
Hpy188I	TCNGA	3 cut(s)	574, 800, 841
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	2 cut(s)	298, 586
HpyAV	CCTTC	1 cut(s)	812
HpyCH4III	ACNGT	4 cut(s)	370, 541, 735, 889
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	8 cut(s)	4, 189, 232, 269, 382, 523, 537, 829
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	1 cut(s)	865
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	2 cut(s)	378, 527
HspAI	GCGC	1 cut(s)	698
Kpn2I	TCCGGA	1 cut(s)	502
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	4 cut(s)	172, 246, 574, 625
LmnI	GCTCC	4 cut(s)	62, 149, 716, 874
LweI	GCATC	2 cut(s)	369, 454
MaeI	CTAG	3 cut(s)	20, 137, 743
MaeII	ACGT	1 cut(s)	9
MalI	GATC	4 cut(s)	174, 248, 576, 627
MboI	GATC	4 cut(s)	172, 246, 574, 625
MboII	GAAGA	3 cut(s)	452, 596, 635
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	7 cut(s)	83, 102, 190, 316, 480, 518, 681
MnlI	CCTC	3 cut(s)	208, 211, 499
MroI	TCCGGA	1 cut(s)	502
MseI	TTAA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	617
MspA1I	CMGCKG	1 cut(s)	581
MspI	CCGG	1 cut(s)	503
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeII	GATC	4 cut(s)	172, 246, 574, 625
NheI	GCTAGC	1 cut(s)	136
NlaIII	CATG	2 cut(s)	378, 527
NlaIV	GGNNCC	2 cut(s)	58, 876
NspI	RCATGY	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	527
PaqCI	CACCTGC	1 cut(s)	437
Ppu21I	YACGTR	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	726
PspN4I	GGNNCC	2 cut(s)	58, 876
PsuI	RGATCY	1 cut(s)	574
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	5 cut(s)	8, 12, 27, 254, 710
RsaNI	GTAC	5 cut(s)	7, 11, 26, 253, 709
RseI	CAYNNNNRTG	1 cut(s)	617
SaqAI	TTAA	1 cut(s)	38
Sau3AI	GATC	4 cut(s)	172, 246, 574, 625
ScaI	AGTACT	2 cut(s)	27, 254
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	8 cut(s)	12, 38, 97, 138, 451, 488, 583, 662
SfaNI	GCATC	2 cut(s)	369, 454
SfcI	CTRYAG	2 cut(s)	29, 369
SmiMI	CAYNNNNRTG	1 cut(s)	617
SnaBI	TACGTA	1 cut(s)	10
SphI	GCATGC	1 cut(s)	527
Sse9I	AATT	7 cut(s)	83, 102, 190, 316, 480, 518, 681
SspI	AATATT	1 cut(s)	600
SspMI	CTAG	3 cut(s)	20, 137, 743
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	4 cut(s)	370, 541, 735, 889
TaiI	ACGT	1 cut(s)	12
TasI	AATT	7 cut(s)	83, 102, 190, 316, 480, 518, 681
TatI	WGTACW	2 cut(s)	25, 252
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	175
TspDTI	ATGAA	4 cut(s)	105, 148, 531, 831
TspGWI	ACGGA	2 cut(s)	49, 428
TspRI	CASTG	1 cut(s)	175
XapI	RAATTY	2 cut(s)	102, 681
XceI	RCATGY	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	372
XmaJI	CCTAGG	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	297
XspI	CTAG	3 cut(s)	20, 137, 743
ZrmI	AGTACT	2 cut(s)	27, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.