Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006267

Physical Location & Seq

Genomic Coordinates Reverse (-)

34617453 .. 34622069

Gene Structure 4617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG289300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAATTCATCTTCTTCTTCATCATCTTGTACTTGCTGTTTTAGAACAAGAACTTGGGTGCGAAGCTTGGTTTTTCTCTTCATCGTGCTGTGCCATGGAGTAGATGCGAGCAGTATTAAGTCTATGAAAGTGAGCGTTTCCAAGGTGGAAGACGCAGTTAATTTCCATATATATTATGGGCAGGCCTTCAAAGTCATTAAGAATGCCATTGACGGCAAGAGCTACCTCCTCATCCAGAACAACTCGAGAATGGCAGCAAGGACAAAATATTGCACCTCAAGGATCAAATCGTTTGTCGTCCCCTTATCAAATTACTCAATCGACACCGATTATAATTTTCCAGTTTCCTTTTTTGAGCTCCTAGGCGTACTACAGAGCTTAAAGGGCATTACATCAGGCTCCGTGGCTTCTCAATGCGTATTGAAATTGTATGAAGCTGGAGAAATTCGAATAATCAACAAAAGTGAGACACAAGAGCTAGCACAATACGGAGCACATTTCATCACCAACACTGATCAACCACAATCTTGCAATTTTGCGTCTTTTATTCCTTATGGAGAGGATACTCCTTTGCAGAGAGCAGAATGGATCAAGTACTTGGGAGTGTTTGCAAATGCTGAAACCAGGGCCAATCAAGTATACAATGTTGTTAGAGAGAATTATCAATGTTTGCTCAATCTCTCAAAAAGCAGAACATCGTTCAAACCAACTGTAGCATGGATGCAGTATGATAATGGTATATGGTCTTTCACAACGGAAATATACAAGTTGAAGGTACAGACTAGATACCAATTTTGGAAATTCTTCCATCATCATTTTTATTTATATACATCGATCACCTTAGGTATACTCCTTGTTAATATGTTAATAGACCAGCTCCAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

33.86

Weight (kDa)

9.16

Isoelectric Point (pI)

26.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65900 AT1G65900
fragaria_vesca	FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290
malus_domestica	MD17G1286700.v1.1
prunus_persica	Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1
pyrus_communis	pycom17g27010
rosa_chinensis	RchiOBHm_Chr3g0488721
rosa_laevigata	RLG00000022928
rosa_multiflora	Rmu_sc0000265.1_g000020 Rmu_sc0001208.1_g000077
rosa_roxburghii	Rroxscaffold_6G00393930
rosa_rugosa	Rorug03G0241000 Rorug03G0241100
rosa_samantha	Rh3AG289300 Rh3BG326100 Rh3CG323800 Rh3DG322100
rosa_wichuraiana	Rw3G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AccI	GTMKAC	2 cut(s)	639, 847
AclWI	GGATC	2 cut(s)	290, 596
AcsI	RAATTY	3 cut(s)	4, 444, 800
AfaI	GTAC	4 cut(s)	31, 369, 596, 777
AgsI	TTSAA	4 cut(s)	190, 424, 703, 772
AjnI	CCWGG	1 cut(s)	623
AjuI	GAANNNNNNNTTGG	2 cut(s)	37, 69
AluBI	AGCT	7 cut(s)	66, 222, 358, 378, 437, 478, 877
AluI	AGCT	7 cut(s)	66, 222, 358, 378, 437, 478, 877
Alw21I	GWGCWC	2 cut(s)	360, 496
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	2 cut(s)	290, 596
Ama87I	CYCGRG	1 cut(s)	244
AoxI	GGCC	2 cut(s)	183, 627
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	3 cut(s)	4, 444, 800
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
Asp700I	GAANNNNTTC	1 cut(s)	803
AspA2I	CCTAGG	1 cut(s)	361
AspS9I	GGNCC	1 cut(s)	627
AsuHPI	GGTGA	2 cut(s)	496, 829
AsuII	TTCGAA	1 cut(s)	448
AsuNHI	GCTAGC	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	244
AvrII	CCTAGG	1 cut(s)	361
AxyI	CCTNAGG	1 cut(s)	841
BanII	GRGCYC	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	2 cut(s)	360, 496
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	1 cut(s)	816
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	625
BciVI	GTATCC	1 cut(s)	556
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	3 cut(s)	362, 479, 783
BfmI	CTRYAG	2 cut(s)	371, 711
BfuI	GTATCC	1 cut(s)	556
BisI	GCNGC	1 cut(s)	255
BlnI	CCTAGG	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	256
BmcAI	AGTACT	1 cut(s)	596
Bme1390I	CCNGG	1 cut(s)	625
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	627
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	625
BmsI	GCATC	2 cut(s)	94, 711
BmtI	GCTAGC	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	2 cut(s)	459, 863
Bpu14I	TTCGAA	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	262
Bsa29I	ATCGAT	1 cut(s)	833
BsaJI	CCNNGG	5 cut(s)	94, 141, 361, 402, 624
Bse1I	ACTGG	1 cut(s)	341
Bse21I	CCTNAGG	1 cut(s)	841
BseBI	CCWGG	1 cut(s)	625
BseCI	ATCGAT	1 cut(s)	833
BseDI	CCNNGG	5 cut(s)	94, 141, 361, 402, 624
BseGI	GGATG	2 cut(s)	231, 726
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	266
BshFI	GGCC	2 cut(s)	185, 629
BshVI	ATCGAT	1 cut(s)	833
BsiHKAI	GWGCWC	2 cut(s)	360, 496
BsiHKCI	CYCGRG	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	185, 629
BsoBI	CYCGRG	1 cut(s)	244
Bsp119I	TTCGAA	1 cut(s)	448
Bsp1286I	GDGCHC	2 cut(s)	360, 496
Bsp143I	GATC	4 cut(s)	282, 514, 588, 834
Bsp19I	CCATGG	1 cut(s)	94
BspANI	GGCC	2 cut(s)	185, 629
BspDI	ATCGAT	1 cut(s)	833
BspLI	GGNNCC	1 cut(s)	400
BspOI	GCTAGC	1 cut(s)	482
BspPI	GGATC	2 cut(s)	290, 596
BspT104I	TTCGAA	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	341
BssECI	CCNNGG	5 cut(s)	94, 141, 361, 402, 624
BssMI	GATC	4 cut(s)	282, 514, 588, 834
BssNAI	GTATAC	2 cut(s)	640, 848
BssT1I	CCWWGG	3 cut(s)	94, 141, 361
Bst1107I	GTATAC	2 cut(s)	640, 848
Bst2UI	CCWGG	1 cut(s)	625
Bst4CI	ACNGT	1 cut(s)	712
Bst6I	CTCTTC	1 cut(s)	83
BstBI	TTCGAA	1 cut(s)	448
BstC8I	GCNNGC	3 cut(s)	109, 183, 480
BstDEI	CTNAG	1 cut(s)	841
BstDSI	CCRYGG	2 cut(s)	94, 402
BstF5I	GGATG	2 cut(s)	231, 726
BstKTI	GATC	4 cut(s)	285, 517, 591, 837
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	4 cut(s)	282, 514, 588, 834
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstNI	CCWGG	1 cut(s)	625
BstSCI	CCNGG	1 cut(s)	623
BstSFI	CTRYAG	2 cut(s)	371, 711
BstV1I	GCAGC	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	156
BstZ17I	GTATAC	2 cut(s)	640, 848
Bsu15I	ATCGAT	1 cut(s)	833
Bsu36I	CCTNAGG	1 cut(s)	841
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	2 cut(s)	185, 629
BsuTUI	ATCGAT	1 cut(s)	833
BtgI	CCRYGG	2 cut(s)	94, 402
BtsCI	GGATG	2 cut(s)	231, 726
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	3 cut(s)	109, 183, 480
Cfr13I	GGNCC	1 cut(s)	627
ClaI	ATCGAT	1 cut(s)	833
CseI	GACGC	2 cut(s)	161, 528
Csp6I	GTAC	4 cut(s)	30, 368, 595, 776
CviAII	CATG	2 cut(s)	95, 717
CviQI	GTAC	4 cut(s)	30, 368, 595, 776
DdeI	CTNAG	1 cut(s)	841
DpnI	GATC	4 cut(s)	284, 516, 590, 836
DpnII	GATC	4 cut(s)	282, 514, 588, 834
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	358
Eco130I	CCWWGG	3 cut(s)	94, 141, 361
Eco147I	AGGCCT	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	358
Eco81I	CCTNAGG	1 cut(s)	841
Eco88I	CYCGRG	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	358
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	623
EcoT14I	CCWWGG	3 cut(s)	94, 141, 361
EcoT38I	GRGCYC	1 cut(s)	360
ErhI	CCWWGG	3 cut(s)	94, 141, 361
FaeI	CATG	2 cut(s)	98, 720
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	2 cut(s)	94, 716
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	2 cut(s)	639, 847
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	2 cut(s)	218, 733
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	3 cut(s)	362, 479, 783
GluI	GCNGC	1 cut(s)	255
GsuI	CTGGAG	2 cut(s)	459, 863
HaeIII	GGCC	2 cut(s)	185, 629
HgaI	GACGC	2 cut(s)	161, 528
Hin1II	CATG	2 cut(s)	98, 720
HindIII	AAGCTT	1 cut(s)	64
HphI	GGTGA	2 cut(s)	496, 829
Hpy166II	GTNNAC	2 cut(s)	640, 848
Hpy188III	TCNNGA	3 cut(s)	235, 246, 880
Hpy8I	GTNNAC	2 cut(s)	640, 848
HpyAV	CCTTC	2 cut(s)	196, 766
HpyCH4III	ACNGT	1 cut(s)	712
HpyCH4V	TGCA	5 cut(s)	273, 531, 574, 611, 724
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	1 cut(s)	841
Hsp92II	CATG	2 cut(s)	98, 720
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	4 cut(s)	282, 514, 588, 834
LmnI	GCTCC	4 cut(s)	363, 404, 491, 882
LpnPI	CCDG	7 cut(s)	167, 248, 354, 381, 423, 610, 637
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	2 cut(s)	94, 711
MaeI	CTAG	3 cut(s)	362, 479, 783
MalI	GATC	4 cut(s)	284, 516, 590, 836
MboI	GATC	4 cut(s)	282, 514, 588, 834
MboII	GAAGA	6 cut(s)	3, 6, 9, 70, 161, 796
MhlI	GDGCHC	2 cut(s)	360, 496
MnlI	CCTC	4 cut(s)	236, 239, 286, 553
MroXI	GAANNNNTTC	1 cut(s)	803
MseI	TTAA	6 cut(s)	117, 159, 198, 380, 858, 866
MspR9I	CCNGG	1 cut(s)	625
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	625
MwoI	GCNNNNNNNGC	1 cut(s)	384
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	4 cut(s)	282, 514, 588, 834
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	2 cut(s)	98, 720
NlaIV	GGNNCC	1 cut(s)	400
NspV	TTCGAA	1 cut(s)	448
PaeR7I	CTCGAG	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	185
PctI	GAATGC	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	803
PkrI	GCNGC	1 cut(s)	256
PsiI	TTATAA	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	623
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	1 cut(s)	627
RsaI	GTAC	4 cut(s)	31, 369, 596, 777
RsaNI	GTAC	4 cut(s)	30, 368, 595, 776
SacI	GAGCTC	1 cut(s)	360
SaqAI	TTAA	6 cut(s)	117, 159, 198, 380, 858, 866
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	4 cut(s)	282, 514, 588, 834
Sau96I	GGNCC	1 cut(s)	627
ScaI	AGTACT	1 cut(s)	596
ScrFI	CCNGG	1 cut(s)	625
SduI	GDGCHC	2 cut(s)	360, 496
SfaNI	GCATC	2 cut(s)	94, 711
SfcI	CTRYAG	2 cut(s)	371, 711
Sfr274I	CTCGAG	1 cut(s)	244
SfuI	TTCGAA	1 cut(s)	448
SlaI	CTCGAG	1 cut(s)	244
SmlI	CTYRAG	2 cut(s)	244, 277
SmoI	CTYRAG	2 cut(s)	244, 277
SseBI	AGGCCT	1 cut(s)	185
SspI	AATATT	1 cut(s)	269
SspMI	CTAG	3 cut(s)	362, 479, 783
SstI	GAGCTC	1 cut(s)	360
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	623
StyI	CCWWGG	3 cut(s)	94, 141, 361
TaaI	ACNGT	1 cut(s)	712
TaqI	TCGA	4 cut(s)	245, 321, 448, 833
TatI	WGTACW	2 cut(s)	29, 594
Tru1I	TTAA	6 cut(s)	117, 159, 198, 380, 858, 866
Tru9I	TTAA	6 cut(s)	117, 159, 198, 380, 858, 866
TscAI	CASTG	1 cut(s)	517
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	6 cut(s)	9, 17, 70, 140, 447, 490
TspGWI	ACGGA	3 cut(s)	391, 504, 770
TspRI	CASTG	1 cut(s)	517
XapI	RAATTY	3 cut(s)	4, 444, 800
XcmI	CCANNNNNNNNNTGG	2 cut(s)	173, 714
XhoI	CTCGAG	1 cut(s)	244
XmaJI	CCTAGG	1 cut(s)	361
XmiI	GTMKAC	2 cut(s)	639, 847
XmnI	GAANNNNTTC	1 cut(s)	803
XspI	CTAG	3 cut(s)	362, 479, 783
ZrmI	AGTACT	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.