Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006267

Physical Location & Seq

Genomic Coordinates Reverse (-)

1021087 .. 1024985

Gene Structure 3899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G014300.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGGTTCATCTTCTTCTTATTGTTTCACCAGTTGGGTGAAAAGCTTTGTCTTCTTCTTCACTGTGGTCTGGCTCTTCTTTGGCTATGGTCGCCATGGAAGAGTAAATGCGGCAACAACTACCGTCAAAGTGAACAGCAGCACTTCAAAGGTGGAAGACGCAGTTAGTTTCCATATATATTATGGACAGACCTTCAAAGTCATCAAAAATGCCATCGACGGCAAGAGCTACCTTCTCATCCAGAACAATTCAAGGATGGCAGCAAGGACAAAATATTGCACCTCAAGGATCAAATCTTTTGTTATCCCATTATCAAACTATTCAATCGATGCCGATTATAATTTTCCAGTTTCCTTTTTCGAGCTCCTGGGATTACTTGGGAGCTTGAAGGGCATTACATCAGACTCCGTGGCTTCTCAATGTGTGTTGAAACTGTATGAAGCTGGAGAAATTGAGGTGATTGACAAAAGTGAGCCACAACAACTAGCAAAATTTGCAGCACATTTTATTACCTACACTGACCAACCACAAGCTTGCAATTTTGCCTCTTTTGTTCCTTATGGAGAGGATAACCCTTTGCAGAGAGCAGAGTGGATCAAGTTCTTGGGAGTGTTCGCAAACGTTGAGAGCAGAGCAAATCAAGTATATGATGCAGTTACACAGAGTTATCAATGTTTGACCAACCGTACGAAAGGCAGGACTTCATTCAAACCAACAGTGGCATGGATGCAGTACGAAAATGGTATATGGTCTTTTACAAAAGAAACATACAAGTTGAAGTATGTGGAAGACGCAGGTGGTGAGAATGTGGATGATTCTATCAACAAGATTACCTACAACATCTCTAGTCCGGACGATTTGGATCAACTGCATGCCATCCTATGTACCGTCGATGTGGTGATTGACGAAACATACACTTCAGATGCAGTTAATTACAATTCATCAACGTTTCTCCAAAATATAAATGTGGAAGATCATTCTTGTTTTGTTTTTCTCTCTAACCAAAGCTTGTGGAGATACGATAAAAGAATTCAAAACTCAACTGCTCTTGACTGGTATAATGGAGCAGTCTCCCAGCCACAACTGGTTTTAGCAGATCTTTTTGAAGTATTCTTCCCTACCGGAAATTATACAACAACATATTTCAGAAATATTGCAAAGGATGAAGGAGTTGTGCACATTACTTCTGAAATGTGTGATAGGGACATTTCCATAGCAATGGAGCCAACAATACCAGCTTGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

416

Amino Acids

46.87

Weight (kDa)

5.17

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65900 AT1G65900
fragaria_vesca	FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290
malus_domestica	MD17G1286700.v1.1
prunus_persica	Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1
pyrus_communis	pycom17g27010
rosa_chinensis	RchiOBHm_Chr3g0488721
rosa_laevigata	RLG00000022928
rosa_multiflora	Rmu_sc0000265.1_g000020 Rmu_sc0001208.1_g000077
rosa_roxburghii	Rroxscaffold_6G00393930
rosa_rugosa	Rorug03G0241000 Rorug03G0241100
rosa_samantha	Rh3AG289300 Rh3BG326100 Rh3CG323800 Rh3DG322100
rosa_wichuraiana	Rw3G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
AarI	CACCTGC	1 cut(s)	785
Acc36I	ACCTGC	1 cut(s)	785
AccB7I	CCANNNNNTGG	1 cut(s)	1241
AccIII	TCCGGA	1 cut(s)	850
AciI	CCGC	1 cut(s)	110
AclI	AACGTT	2 cut(s)	621, 947
AclWI	GGATC	3 cut(s)	296, 602, 870
AcsI	RAATTY	2 cut(s)	491, 1029
AcuI	CTGAAG	1 cut(s)	903
AfaI	GTAC	3 cut(s)	688, 734, 886
AfiI	CCNNNNNNNGG	1 cut(s)	1241
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	8 cut(s)	45, 228, 364, 384, 443, 533, 1008, 1238
AluI	AGCT	8 cut(s)	45, 228, 364, 384, 443, 533, 1008, 1238
Alw21I	GWGCWC	2 cut(s)	366, 1179
Alw26I	GTCTC	1 cut(s)	1075
Alw44I	GTGCAC	1 cut(s)	1175
AlwI	GGATC	3 cut(s)	296, 602, 870
Aor13HI	TCCGGA	1 cut(s)	850
ApaLI	GTGCAC	1 cut(s)	1175
ApeKI	GCWGC	3 cut(s)	138, 260, 497
ApoI	RAATTY	2 cut(s)	491, 1029
AsuHPI	GGTGA	5 cut(s)	19, 49, 469, 812, 910
BaeGI	GKGCMC	1 cut(s)	1179
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	3 cut(s)	43, 162, 795
Bbv12I	GWGCWC	2 cut(s)	366, 1179
BbvI	GCAGC	3 cut(s)	150, 272, 509
BccI	CCATC	3 cut(s)	221, 250, 884
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	1075
BfaI	CTAG	2 cut(s)	485, 846
BfuAI	ACCTGC	1 cut(s)	785
BglII	AGATCT	1 cut(s)	1096
BisI	GCNGC	4 cut(s)	111, 139, 261, 498
BlsI	GCNGC	4 cut(s)	112, 140, 262, 499
Bme1390I	CCNGG	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	1224
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	4 cut(s)	319, 640, 717, 913
BpiI	GAAGAC	3 cut(s)	43, 162, 795
BpmI	CTGGAG	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	268
Bsa29I	ATCGAT	1 cut(s)	327
BsaBI	GATNNNNATC	1 cut(s)	861
BsaJI	CCNNGG	3 cut(s)	94, 367, 408
BsaWI	WCCGGW	2 cut(s)	850, 1121
Bsc4I	CCNNNNNNNGG	1 cut(s)	1241
Bse1I	ACTGG	4 cut(s)	30, 347, 1058, 1089
Bse3DI	GCAATG	1 cut(s)	1224
Bse8I	GATNNNNATC	1 cut(s)	861
BseAI	TCCGGA	1 cut(s)	850
BseBI	CCWGG	1 cut(s)	368
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	3 cut(s)	94, 367, 408
BseGI	GGATG	6 cut(s)	237, 261, 732, 817, 876, 1168
BseJI	GATNNNNATC	1 cut(s)	861
BseLI	CCNNNNNNNGG	1 cut(s)	1241
BseMI	GCAATG	1 cut(s)	1224
BseNI	ACTGG	4 cut(s)	30, 347, 1058, 1089
BseSI	GKGCMC	1 cut(s)	1179
BseXI	GCAGC	3 cut(s)	150, 272, 509
BseYI	CCCAGC	1 cut(s)	1074
BshVI	ATCGAT	1 cut(s)	327
BsiHKAI	GWGCWC	2 cut(s)	366, 1179
BsiSI	CCGG	2 cut(s)	851, 1122
BsiWI	CGTACG	1 cut(s)	686
BslFI	GGGAC	1 cut(s)	1217
BslI	CCNNNNNNNGG	1 cut(s)	1241
BsmAI	GTCTC	1 cut(s)	1075
BsmFI	GGGAC	1 cut(s)	1217
Bsp1286I	GDGCHC	2 cut(s)	366, 1179
Bsp13I	TCCGGA	1 cut(s)	850
Bsp143I	GATC	5 cut(s)	288, 594, 862, 973, 1096
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	1 cut(s)	110
BspDI	ATCGAT	1 cut(s)	327
BspEI	TCCGGA	1 cut(s)	850
BspLI	GGNNCC	1 cut(s)	1224
BspMI	ACCTGC	1 cut(s)	785
BspPI	GGATC	3 cut(s)	296, 602, 870
BspQI	GCTCTTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	1224
BsrI	ACTGG	4 cut(s)	30, 347, 1058, 1089
BssECI	CCNNGG	3 cut(s)	94, 367, 408
BssMI	GATC	5 cut(s)	288, 594, 862, 973, 1096
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	6 cut(s)	64, 124, 435, 686, 718, 889
Bst6I	CTCTTC	2 cut(s)	80, 94
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstC8I	GCNNGC	2 cut(s)	535, 873
BstDSI	CCRYGG	2 cut(s)	94, 408
BstF5I	GGATG	6 cut(s)	237, 261, 732, 817, 876, 1168
BstKTI	GATC	5 cut(s)	291, 597, 865, 976, 1099
BstMAI	GTCTC	1 cut(s)	1075
BstMBI	GATC	5 cut(s)	288, 594, 862, 973, 1096
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 390, 494
BstNI	CCWGG	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	875
BstSCI	CCNGG	1 cut(s)	366
BstSLI	GKGCMC	1 cut(s)	1179
BstV1I	GCAGC	3 cut(s)	150, 272, 509
BstV2I	GAAGAC	3 cut(s)	43, 162, 795
BstX2I	RGATCY	1 cut(s)	1096
BstXI	CCANNNNNNTGG	1 cut(s)	1219
BstYI	RGATCY	1 cut(s)	1096
Bsu15I	ATCGAT	1 cut(s)	327
BsuTUI	ATCGAT	1 cut(s)	327
BtgI	CCRYGG	2 cut(s)	94, 408
BtsCI	GGATG	6 cut(s)	237, 261, 732, 817, 876, 1168
BtsIMutI	CAGTG	3 cut(s)	60, 516, 723
BveI	ACCTGC	1 cut(s)	785
Cac8I	GCNNGC	2 cut(s)	535, 873
ClaI	ATCGAT	1 cut(s)	327
CseI	GACGC	2 cut(s)	167, 800
Csp6I	GTAC	3 cut(s)	687, 733, 885
CspCI	CAANNNNNGTGG	2 cut(s)	992, 1027
CviAII	CATG	3 cut(s)	95, 723, 872
CviQI	GTAC	3 cut(s)	687, 733, 885
DpnI	GATC	5 cut(s)	290, 596, 864, 975, 1098
DpnII	GATC	5 cut(s)	288, 594, 862, 973, 1096
Eam1104I	CTCTTC	2 cut(s)	80, 94
EarI	CTCTTC	2 cut(s)	80, 94
Ecl136II	GAGCTC	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	366
Eco53kI	GAGCTC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	903
EcoICRI	GAGCTC	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	1029
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	3 cut(s)	98, 726, 875
FaqI	GGGAC	1 cut(s)	1217
FatI	CATG	3 cut(s)	94, 722, 871
Fnu4HI	GCNGC	4 cut(s)	111, 139, 261, 498
FokI	GGATG	6 cut(s)	224, 268, 739, 824, 863, 1175
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	4 cut(s)	111, 139, 261, 498
FspBI	CTAG	2 cut(s)	485, 846
GluI	GCNGC	4 cut(s)	111, 139, 261, 498
GsaI	CCCAGC	1 cut(s)	1078
GsuI	CTGGAG	1 cut(s)	465
HapII	CCGG	2 cut(s)	851, 1122
HgaI	GACGC	2 cut(s)	167, 800
Hin1II	CATG	3 cut(s)	98, 726, 875
HindIII	AAGCTT	3 cut(s)	43, 531, 1006
HinfI	GANTC	2 cut(s)	404, 815
HpaII	CCGG	2 cut(s)	851, 1122
HphI	GGTGA	5 cut(s)	19, 49, 469, 812, 910
Hpy166II	GTNNAC	2 cut(s)	133, 1177
Hpy188I	TCNGA	4 cut(s)	403, 922, 1148, 1189
Hpy188III	TCNNGA	3 cut(s)	241, 851, 1049
Hpy8I	GTNNAC	2 cut(s)	133, 1177
Hpy99I	CGWCG	2 cut(s)	221, 893
HpyAV	CCTTC	4 cut(s)	202, 242, 382, 1160
HpyCH4III	ACNGT	6 cut(s)	64, 124, 435, 686, 718, 889
HpyCH4IV	ACGT	2 cut(s)	621, 947
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 390, 494
HpySE526I	ACGT	2 cut(s)	621, 947
Hsp92II	CATG	3 cut(s)	98, 726, 875
Kpn2I	TCCGGA	1 cut(s)	850
Kzo9I	GATC	5 cut(s)	288, 594, 862, 973, 1096
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	4 cut(s)	369, 381, 1064, 1222
Lsp1109I	GCAGC	3 cut(s)	150, 272, 509
LweI	GCATC	4 cut(s)	319, 640, 717, 913
MaeI	CTAG	2 cut(s)	485, 846
MaeII	ACGT	2 cut(s)	621, 947
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	5 cut(s)	290, 596, 864, 975, 1098
MboI	GATC	5 cut(s)	288, 594, 862, 973, 1096
MflI	RGATCY	1 cut(s)	1096
MhlI	GDGCHC	2 cut(s)	366, 1179
MluCI	AATT	9 cut(s)	247, 340, 450, 491, 538, 931, 937, 1029, 1126
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	4 cut(s)	292, 448, 556, 559
MroI	TCCGGA	1 cut(s)	850
MseI	TTAA	1 cut(s)	930
MslI	CAYNNNNRTG	1 cut(s)	1217
MspI	CCGG	2 cut(s)	851, 1122
MspR9I	CCNGG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	3 cut(s)	90, 390, 494
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	5 cut(s)	288, 594, 862, 973, 1096
NlaIII	CATG	3 cut(s)	98, 726, 875
NlaIV	GGNNCC	1 cut(s)	1224
NspI	RCATGY	1 cut(s)	875
PaeI	GCATGC	1 cut(s)	875
PaqCI	CACCTGC	1 cut(s)	785
PciSI	GCTCTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	815
Pfl23II	CGTACG	1 cut(s)	686
PflMI	CCANNNNNTGG	1 cut(s)	1241
PkrI	GCNGC	4 cut(s)	112, 140, 262, 499
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PsiI	TTATAA	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	366
Psp1406I	AACGTT	2 cut(s)	621, 947
Psp6I	CCWGG	1 cut(s)	366
PspFI	CCCAGC	1 cut(s)	1074
PspGI	CCWGG	1 cut(s)	366
PspLI	CGTACG	1 cut(s)	686
PspN4I	GGNNCC	1 cut(s)	1224
PsuI	RGATCY	1 cut(s)	1096
RsaI	GTAC	3 cut(s)	688, 734, 886
RsaNI	GTAC	3 cut(s)	687, 733, 885
RseI	CAYNNNNRTG	1 cut(s)	1217
SacI	GAGCTC	1 cut(s)	366
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	930
SatI	GCNGC	4 cut(s)	111, 139, 261, 498
Sau3AI	GATC	5 cut(s)	288, 594, 862, 973, 1096
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	2 cut(s)	366, 1179
SfaNI	GCATC	4 cut(s)	319, 640, 717, 913
SmiMI	CAYNNNNRTG	1 cut(s)	1217
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
SphI	GCATGC	1 cut(s)	875
Sse9I	AATT	9 cut(s)	247, 340, 450, 491, 538, 931, 937, 1029, 1126
SsiI	CCGC	1 cut(s)	110
SspI	AATATT	2 cut(s)	275, 1153
SspMI	CTAG	2 cut(s)	485, 846
SstI	GAGCTC	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	6 cut(s)	64, 124, 435, 686, 718, 889
TaiI	ACGT	2 cut(s)	624, 950
TaqI	TCGA	4 cut(s)	216, 327, 360, 891
TasI	AATT	9 cut(s)	247, 340, 450, 491, 538, 931, 937, 1029, 1126
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	815
Tru1I	TTAA	1 cut(s)	930
Tru9I	TTAA	1 cut(s)	930
TscAI	CASTG	3 cut(s)	67, 523, 723
TseI	GCWGC	3 cut(s)	138, 260, 497
TspDTI	ATGAA	4 cut(s)	453, 693, 930, 1179
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	3 cut(s)	67, 523, 723
Van91I	CCANNNNNTGG	1 cut(s)	1241
VneI	GTGCAC	1 cut(s)	1175
XapI	RAATTY	2 cut(s)	491, 1029
XceI	RCATGY	1 cut(s)	875
XcmI	CCANNNNNNNNNTGG	2 cut(s)	179, 720
XspI	CTAG	2 cut(s)	485, 846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.