Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006267

Physical Location & Seq

Genomic Coordinates Forward (+)

34634237 .. 34644751

Gene Structure 10515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1286700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCTTCATCTTCTTCTTCTTATAGTTTTAAGAGCAGTTGGGTGCAAAGGTTCGTCCCCTTCTTCGTTGCGGTCTGGCTTTTCTTTAGCTATGATTGCCATGGAATAATTGGAGCAAATGCAGCCACAGCGCCTGTGAAAGTGAATGGCAATACTTCAAAGGTGGTAGACGCAATTAATTTCCATGTATACTATGGACAGACTTTCAAAGTCATCAAGAATTCCATTGACGGCAAGAGCTACCTTCTCATCCAGAACAATACGAGGATGGCAGCAAGGACAAAATATTGTACCTCGAGGATCAAATCATTTGTTATCCCATTATCAAATTATTCAATCGATGCCGATTATTTTCCAGTTTCCTTTTTCGAGCTCCTAGGATTACTGGGGAGCTTGAAGGGCATTACATCAAACTCTGTGGCTTCTCAATGTGTTTTGAAATTGTATGAAGCTGGAGAAATTGATTTGATTCCCAAAGGTGAGCCAGAACAAGTAGCAAAATTTGCAGCACATTTCATTACCAACATTGACCAACCACAGGCTTGCAATTTTGTCTCTTTTGTTCCTTATGGAGAGGATAACCCTTTGCAGAGAGCAGAGTGGATCAAGTTCTTGGGAGTGTTTGCGAACGTTGAGAGCAGAGCAAATCAAGTATATGATGCAGTTACACAGAATTATCAATGCTTGACCAAACTTGCGAAAAACAGGACATCTTTCAAACCAACAGTAGCATGGATGGAGTACGATAATGGTGCATGGTCTTTTGCAAAGGAAACATACAAATTGAAGTATGTGGAAGACGCATTTGGTGAAAATGTGGATGATTCTATCAACAAGAATACCTACAACATCTCTAGTCCTGACGATTTGGATGCACTGCATGCCATCCTATGTACCGTGGATGTGGTTATTGATGAAACATACACTTGGGATCCAGTTATGTACAATTCATCAACGTTTCTGCAAAATATAAACGTGGAAGATCATTCTTGTTTTGCTTTCCTCTCTAACCAAAGCATTTGGAGATACGATAAAAGAGTTCAGAACTCAACTGCCCTTGACTGGTACAATGGAGCAATCTCCCAGCCTCAACTGGTCTTAGCAGATCTCATTGAAGTACTGTTCCCTACCGGAAATTATACAACAACATACTTCAGGAATATTGCAAAGGATGACGGGCTTGTGAACATAACTTCTGAAATGTGTGACAGAGATATCTCCTCTGCAATGGAGCCTACATTACCAGCTTGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

419

Amino Acids

46.98

Weight (kDa)

5.0

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65900 AT1G65900
fragaria_vesca	FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290
malus_domestica	MD17G1286700.v1.1
prunus_persica	Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1
pyrus_communis	pycom17g27010
rosa_chinensis	RchiOBHm_Chr3g0488721
rosa_laevigata	RLG00000022928
rosa_multiflora	Rmu_sc0000265.1_g000020 Rmu_sc0001208.1_g000077
rosa_roxburghii	Rroxscaffold_6G00393930
rosa_rugosa	Rorug03G0241000 Rorug03G0241100
rosa_samantha	Rh3AG289300 Rh3BG326100 Rh3CG323800 Rh3DG322100
rosa_wichuraiana	Rw3G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	295
AccI	GTMKAC	2 cut(s)	168, 189
AciI	CCGC	1 cut(s)	71
AclI	AACGTT	2 cut(s)	630, 956
AclWI	GGATC	4 cut(s)	308, 611, 926, 939
AcsI	RAATTY	2 cut(s)	220, 500
AcuI	CTGAAG	1 cut(s)	1138
AfaI	GTAC	6 cut(s)	292, 743, 895, 944, 1067, 1119
AfiI	CCNNNNNNNGG	2 cut(s)	538, 1062
AgsI	TTSAA	8 cut(s)	159, 208, 336, 397, 439, 718, 787, 1115
AjuI	GAANNNNNNNTTGG	2 cut(s)	789, 821
AluBI	AGCT	6 cut(s)	90, 240, 373, 393, 452, 1247
AluI	AGCT	6 cut(s)	90, 240, 373, 393, 452, 1247
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	559
AlwI	GGATC	4 cut(s)	308, 611, 926, 939
AlwNI	CAGNNNCTG	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	295
ApeKI	GCWGC	3 cut(s)	122, 272, 506
ApoI	RAATTY	2 cut(s)	220, 500
AseI	ATTAAT	1 cut(s)	177
AspA2I	CCTAGG	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	491, 821
AvaI	CYCGRG	1 cut(s)	295
AvrII	CCTAGG	1 cut(s)	376
BamHI	GGATCC	1 cut(s)	931
BanII	GRGCYC	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	804
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	134, 284, 518
BccI	CCATC	3 cut(s)	262, 730, 893
BceAI	ACGGC	1 cut(s)	247
BcgI	CGANNNNNNTGC	4 cut(s)	734, 768, 854, 888
BcoDI	GTCTC	1 cut(s)	559
BfaI	CTAG	2 cut(s)	377, 855
BfoI	RGCGCY	1 cut(s)	134
BglII	AGATCT	1 cut(s)	1105
BisI	GCNGC	3 cut(s)	123, 273, 507
BlnI	CCTAGG	1 cut(s)	376
BlsI	GCNGC	3 cut(s)	124, 274, 508
BmcAI	AGTACT	1 cut(s)	1119
BmeT110I	CYCGRG	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	933, 1233
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	3 cut(s)	331, 649, 862
BmuI	ACTGGG	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	804
BpmI	CTGGAG	1 cut(s)	474
Bsa29I	ATCGAT	1 cut(s)	339
BsaJI	CCNNGG	3 cut(s)	100, 376, 897
BsaWI	WCCGGW	1 cut(s)	1130
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 1062
Bse1I	ACTGG	5 cut(s)	356, 390, 935, 1067, 1098
Bse3DI	GCAATG	1 cut(s)	1233
BseCI	ATCGAT	1 cut(s)	339
BseDI	CCNNGG	3 cut(s)	100, 376, 897
BseGI	GGATG	8 cut(s)	249, 273, 741, 826, 877, 885, 907, 1177
BseLI	CCNNNNNNNGG	2 cut(s)	538, 1062
BseMI	GCAATG	1 cut(s)	1233
BseNI	ACTGG	5 cut(s)	356, 390, 935, 1067, 1098
BseRI	GAGGAG	1 cut(s)	1210
BseXI	GCAGC	3 cut(s)	134, 284, 518
BseYI	CCCAGC	1 cut(s)	1083
BshVI	ATCGAT	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	1131
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	538, 1062
BsmAI	GTCTC	1 cut(s)	559
BsmFI	GGGAC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp1407I	TGTACA	1 cut(s)	942
Bsp143I	GATC	5 cut(s)	300, 603, 931, 982, 1105
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	1 cut(s)	71
BspDI	ATCGAT	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	933, 1233
BspPI	GGATC	4 cut(s)	308, 611, 926, 939
BsrDI	GCAATG	1 cut(s)	1233
BsrGI	TGTACA	1 cut(s)	942
BsrI	ACTGG	5 cut(s)	356, 390, 935, 1067, 1098
BssECI	CCNNGG	3 cut(s)	100, 376, 897
BssMI	GATC	5 cut(s)	300, 603, 931, 982, 1105
BssNAI	GTATAC	1 cut(s)	190
BssT1I	CCWWGG	2 cut(s)	100, 376
Bst1107I	GTATAC	1 cut(s)	190
Bst4CI	ACNGT	3 cut(s)	727, 898, 1122
BstAPI	GCANNNNNTGC	2 cut(s)	503, 881
BstAUI	TGTACA	1 cut(s)	942
BstC8I	GCNNGC	2 cut(s)	544, 882
BstDEI	CTNAG	1 cut(s)	1099
BstDSI	CCRYGG	2 cut(s)	100, 897
BstF5I	GGATG	8 cut(s)	249, 273, 741, 826, 877, 885, 907, 1177
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	5 cut(s)	303, 606, 934, 985, 1108
BstMAI	GTCTC	1 cut(s)	559
BstMBI	GATC	5 cut(s)	300, 603, 931, 982, 1105
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 122, 128, 399, 503, 881
BstNSI	RCATGY	1 cut(s)	884
BstV1I	GCAGC	3 cut(s)	134, 284, 518
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	2 cut(s)	931, 1105
BstYI	RGATCY	2 cut(s)	931, 1105
BstZ17I	GTATAC	1 cut(s)	190
Bsu15I	ATCGAT	1 cut(s)	339
BsuTUI	ATCGAT	1 cut(s)	339
BtgI	CCRYGG	2 cut(s)	100, 897
BtsCI	GGATG	8 cut(s)	249, 273, 741, 826, 877, 885, 907, 1177
BtsI	GCAGTG	1 cut(s)	875
BtsIMutI	CAGTG	1 cut(s)	875
Cac8I	GCNNGC	2 cut(s)	544, 882
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	1 cut(s)	133
ClaI	ATCGAT	1 cut(s)	339
CseI	GACGC	2 cut(s)	179, 809
Csp6I	GTAC	6 cut(s)	291, 742, 894, 943, 1066, 1118
CspCI	CAANNNNNGTGG	2 cut(s)	399, 434
CviAII	CATG	5 cut(s)	101, 185, 732, 756, 881
CviQI	GTAC	6 cut(s)	291, 742, 894, 943, 1066, 1118
DdeI	CTNAG	1 cut(s)	1099
DpnI	GATC	5 cut(s)	302, 605, 933, 984, 1107
DpnII	GATC	5 cut(s)	300, 603, 931, 982, 1105
Ecl136II	GAGCTC	1 cut(s)	373
Eco130I	CCWWGG	2 cut(s)	100, 376
Eco24I	GRGCYC	1 cut(s)	375
Eco32I	GATATC	1 cut(s)	1216
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	1138
Eco88I	CYCGRG	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	373
EcoRI	GAATTC	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	1216
EcoT14I	CCWWGG	2 cut(s)	100, 376
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	2 cut(s)	100, 376
FaeI	CATG	5 cut(s)	104, 188, 735, 759, 884
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	5 cut(s)	100, 184, 731, 755, 880
FblI	GTMKAC	2 cut(s)	168, 189
Fnu4HI	GCNGC	3 cut(s)	123, 273, 507
FokI	GGATG	8 cut(s)	236, 280, 748, 833, 872, 884, 914, 1184
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	3 cut(s)	123, 273, 507
FspBI	CTAG	2 cut(s)	377, 855
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	3 cut(s)	123, 273, 507
GsaI	CCCAGC	1 cut(s)	1087
GsuI	CTGGAG	1 cut(s)	474
HaeII	RGCGCY	1 cut(s)	134
HapII	CCGG	1 cut(s)	1131
HgaI	GACGC	2 cut(s)	179, 809
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	5 cut(s)	104, 188, 735, 759, 884
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	2 cut(s)	469, 824
HpaII	CCGG	1 cut(s)	1131
HphI	GGTGA	2 cut(s)	491, 821
Hpy166II	GTNNAC	3 cut(s)	169, 190, 1186
Hpy188I	TCNGA	2 cut(s)	1044, 1198
Hpy188III	TCNNGA	4 cut(s)	217, 253, 860, 1156
Hpy8I	GTNNAC	3 cut(s)	169, 190, 1186
HpyAV	CCTTC	3 cut(s)	70, 254, 391
HpyCH4III	ACNGT	3 cut(s)	727, 898, 1122
HpyCH4IV	ACGT	3 cut(s)	630, 956, 975
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 122, 128, 399, 503, 881
HpyF3I	CTNAG	1 cut(s)	1099
HpySE526I	ACGT	3 cut(s)	630, 956, 975
Hsp92II	CATG	5 cut(s)	104, 188, 735, 759, 884
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	5 cut(s)	300, 603, 931, 982, 1105
LmnI	GCTCC	5 cut(s)	113, 378, 390, 1073, 1231
Lsp1109I	GCAGC	3 cut(s)	134, 284, 518
LweI	GCATC	3 cut(s)	331, 649, 862
MaeI	CTAG	2 cut(s)	377, 855
MaeII	ACGT	3 cut(s)	630, 956, 975
MaeIII	GTNAC	2 cut(s)	664, 1205
MalI	GATC	5 cut(s)	302, 605, 933, 984, 1107
MboI	GATC	5 cut(s)	300, 603, 931, 982, 1105
MboII	GAAGA	6 cut(s)	3, 6, 9, 55, 809, 992
MflI	RGATCY	2 cut(s)	931, 1105
MhlI	GDGCHC	1 cut(s)	375
MnlI	CCTC	7 cut(s)	258, 291, 304, 568, 1013, 1098, 1231
MseI	TTAA	2 cut(s)	30, 177
MspI	CCGG	1 cut(s)	1131
MwoI	GCNNNNNNNGC	6 cut(s)	96, 122, 128, 399, 503, 881
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	5 cut(s)	300, 603, 931, 982, 1105
NlaIII	CATG	5 cut(s)	104, 188, 735, 759, 884
NlaIV	GGNNCC	2 cut(s)	933, 1233
NmuCI	GTSAC	1 cut(s)	1205
NspI	RCATGY	1 cut(s)	884
PaeI	GCATGC	1 cut(s)	884
PaeR7I	CTCGAG	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	469, 824
PkrI	GCNGC	3 cut(s)	124, 274, 508
PshBI	ATTAAT	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	375
Psp1406I	AACGTT	2 cut(s)	630, 956
PspFI	CCCAGC	1 cut(s)	1083
PspN4I	GGNNCC	2 cut(s)	933, 1233
PspXI	VCTCGAGB	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	2 cut(s)	931, 1105
RsaI	GTAC	6 cut(s)	292, 743, 895, 944, 1067, 1119
RsaNI	GTAC	6 cut(s)	291, 742, 894, 943, 1066, 1118
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	30, 177
SatI	GCNGC	3 cut(s)	123, 273, 507
Sau3AI	GATC	5 cut(s)	300, 603, 931, 982, 1105
ScaI	AGTACT	1 cut(s)	1119
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	3 cut(s)	331, 649, 862
Sfr274I	CTCGAG	1 cut(s)	295
SlaI	CTCGAG	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
SphI	GCATGC	1 cut(s)	884
SsiI	CCGC	1 cut(s)	71
SspI	AATATT	2 cut(s)	287, 1162
SspMI	CTAG	2 cut(s)	377, 855
SstI	GAGCTC	1 cut(s)	375
StyI	CCWWGG	2 cut(s)	100, 376
TaaI	ACNGT	3 cut(s)	727, 898, 1122
TaiI	ACGT	3 cut(s)	633, 959, 978
TaqI	TCGA	3 cut(s)	296, 339, 369
TatI	WGTACW	2 cut(s)	942, 1117
TfiI	GAWTC	2 cut(s)	469, 824
Tru1I	TTAA	2 cut(s)	30, 177
Tru9I	TTAA	2 cut(s)	30, 177
TscAI	CASTG	1 cut(s)	882
TseFI	GTSAC	1 cut(s)	1205
TseI	GCWGC	3 cut(s)	122, 272, 506
Tsp45I	GTSAC	1 cut(s)	1205
TspDTI	ATGAA	4 cut(s)	462, 505, 930, 939
TspRI	CASTG	1 cut(s)	882
VspI	ATTAAT	1 cut(s)	177
XapI	RAATTY	2 cut(s)	220, 500
XceI	RCATGY	1 cut(s)	884
XcmI	CCANNNNNNNNNTGG	3 cut(s)	107, 191, 729
XhoI	CTCGAG	1 cut(s)	295
XmaJI	CCTAGG	1 cut(s)	376
XmiI	GTMKAC	2 cut(s)	168, 189
XspI	CTAG	2 cut(s)	377, 855
ZrmI	AGTACT	1 cut(s)	1119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.