Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006267

Physical Location & Seq

Genomic Coordinates Reverse (-)

33877308 .. 33881316

Gene Structure 4009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG326100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGAATTCATCTTCTTCATCATCATCTTGTACTTGCTGTTTTAGAACAAGAACTTGGGTGCGAAGCTTGGTTTTTCTCTTCATCGTGCTGTGCCATGGAGTAGATGCGAGCAGTATTAAGTCTATGAAAGTGAGCGTTTCCAAGGTGGAAGACGCAGTTAATTTCCATATATATTATGGGCAGGCCTTCAAAGTCATTAAGAATGCCATTGACGGCAAGAGCTACCTCCTCATCCAGAACAACTCGAGAATGGCAGCAAGGACAAAATATTGCACCTCAAGGATCAAATCGTTTGTCGTCCCCTTATCAAATTACTCAATCGACACCGATTATAATTTTCCAGTTTCCTTTTTTGAGCTCCTAGGCGTACTACAGAGCTTAAAGGGCATTACATCAGGCTCCGTGGCTTCTCAATGCGTATTGAAATTGTATGAAGCTGGAGAAATTAGTATAATCAACAAAAGTGAGACACAAGAGCTAGCACAATATGGAGCACATTTCATCACCAACACTGATCAACCACAATCTTGCAATTTTGCCTCTTTTATTCCTTATGGAGAGGATACTCCTTTGCAGAGAGCAGAATGGATCAAGTACTTGGGAGTGTTTGCAAATGCTGAAACCAGGGCCAATCAAGTATACAATGTTGTTAGAGAGAATTATCAATGTTTGCTCAATCTCTCAAAAAGCAGAACATCGTTCAAACCAACTGTAGCATGGATGCAGTATGATAATGGTATATGGTCTTTCACAACGGAAATATACAAGTTGAAGTATGTGGAAGACGCAGGTGGTGAGAATGTGGATTCTTCTATCAACAAAATTACCTATAACATCTCTAATCCGGAGGATTTGGATGAATTGCATGCCATCCTTTGCACCGTGGATGTGGCTATTGACGAAACATTTACTTCAGATCCAGCTGTTTACAATACATCAACATTTCTTCAAAACATAAATGTGGAAGATCATTCTTGTTTTGTTTTTCTCTCTAACCAAAGCTTATGGAGATACGATAAAAGAATTCAAAACTCAACTGCGCTTGACTGGTACAATGGAGCAGTCTCCCAGCCACAGTTGGTTCTAGCAGATTTTATTGAAGTTTTATTCCCTACTGGAAACTATACAACAACATATTTCAGAAATATAGCCAAGGATGAAGGAGTTGTGCAGATTACTTCTGAAATGTGTGATAGGGATGTCTCCTTAGCAATGGAGCCAGCAATAACAGTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

412

Amino Acids

46.4

Weight (kDa)

5.11

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65900 AT1G65900
fragaria_vesca	FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290
malus_domestica	MD17G1286700.v1.1
prunus_persica	Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1
pyrus_communis	pycom17g27010
rosa_chinensis	RchiOBHm_Chr3g0488721
rosa_laevigata	RLG00000022928
rosa_multiflora	Rmu_sc0000265.1_g000020 Rmu_sc0001208.1_g000077
rosa_roxburghii	Rroxscaffold_6G00393930
rosa_rugosa	Rorug03G0241000 Rorug03G0241100
rosa_samantha	Rh3AG289300 Rh3BG326100 Rh3CG323800 Rh3DG322100
rosa_wichuraiana	Rw3G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AarI	CACCTGC	1 cut(s)	779
Acc36I	ACCTGC	1 cut(s)	779
AccI	GTMKAC	1 cut(s)	639
AccIII	TCCGGA	1 cut(s)	844
AclWI	GGATC	3 cut(s)	290, 596, 911
AcsI	RAATTY	2 cut(s)	4, 1023
AcuI	CTGAAG	1 cut(s)	897
AfaI	GTAC	4 cut(s)	31, 369, 596, 1052
AgsI	TTSAA	7 cut(s)	190, 424, 703, 772, 950, 1028, 1100
AjnI	CCWGG	1 cut(s)	623
AjuI	GAANNNNNNNTTGG	2 cut(s)	37, 69
AluBI	AGCT	8 cut(s)	66, 222, 358, 378, 437, 478, 923, 1002
AluI	AGCT	8 cut(s)	66, 222, 358, 378, 437, 478, 923, 1002
Alw21I	GWGCWC	2 cut(s)	360, 496
Alw26I	GTCTC	3 cut(s)	461, 1069, 1207
AlwI	GGATC	3 cut(s)	290, 596, 911
Ama87I	CYCGRG	1 cut(s)	244
Aor13HI	TCCGGA	1 cut(s)	844
AoxI	GGCC	2 cut(s)	183, 627
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	2 cut(s)	4, 1023
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AspA2I	CCTAGG	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	1042
AspS9I	GGNCC	1 cut(s)	627
AsuHPI	GGTGA	2 cut(s)	496, 806
AsuNHI	GCTAGC	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	244
AvrII	CCTAGG	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	360
BbsI	GAAGAC	2 cut(s)	156, 789
Bbv12I	GWGCWC	2 cut(s)	360, 496
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	1 cut(s)	878
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	625
BciVI	GTATCC	1 cut(s)	556
BclI	TGATCA	1 cut(s)	514
BcoDI	GTCTC	3 cut(s)	461, 1069, 1207
BfaI	CTAG	3 cut(s)	362, 479, 1085
BfmI	CTRYAG	2 cut(s)	371, 711
BfuAI	ACCTGC	1 cut(s)	779
BfuI	GTATCC	1 cut(s)	556
BisI	GCNGC	1 cut(s)	255
BlnI	CCTAGG	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	256
BmcAI	AGTACT	1 cut(s)	596
Bme1390I	CCNGG	1 cut(s)	625
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	627
BmiI	GGNNCC	2 cut(s)	400, 1218
BmrFI	CCNGG	1 cut(s)	625
BmsI	GCATC	2 cut(s)	94, 711
BmtI	GCTAGC	1 cut(s)	482
BpiI	GAAGAC	2 cut(s)	156, 789
BpmI	CTGGAG	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	1207
BpuEI	CTTGAG	1 cut(s)	262
BsaJI	CCNNGG	7 cut(s)	94, 141, 361, 402, 624, 882, 1152
BsaWI	WCCGGW	1 cut(s)	844
Bse1I	ACTGG	3 cut(s)	341, 1052, 1120
Bse3DI	GCAATG	1 cut(s)	1218
BseAI	TCCGGA	1 cut(s)	844
BseBI	CCWGG	1 cut(s)	625
BseDI	CCNNGG	7 cut(s)	94, 141, 361, 402, 624, 882, 1152
BseGI	GGATG	7 cut(s)	231, 726, 862, 870, 892, 1162, 1204
BseMI	GCAATG	1 cut(s)	1218
BseNI	ACTGG	3 cut(s)	341, 1052, 1120
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	266
BseYI	CCCAGC	1 cut(s)	1068
BsgI	GTGCAG	1 cut(s)	1190
BshFI	GGCC	2 cut(s)	185, 629
BsiHKAI	GWGCWC	2 cut(s)	360, 496
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	845
BslFI	GGGAC	1 cut(s)	284
BsmAI	GTCTC	3 cut(s)	461, 1069, 1207
BsmFI	GGGAC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	185, 629
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	360, 496
Bsp13I	TCCGGA	1 cut(s)	844
Bsp143I	GATC	5 cut(s)	282, 514, 588, 916, 967
Bsp19I	CCATGG	1 cut(s)	94
BspANI	GGCC	2 cut(s)	185, 629
BspEI	TCCGGA	1 cut(s)	844
BspLI	GGNNCC	2 cut(s)	400, 1218
BspMI	ACCTGC	1 cut(s)	779
BspOI	GCTAGC	1 cut(s)	482
BspPI	GGATC	3 cut(s)	290, 596, 911
BsrDI	GCAATG	1 cut(s)	1218
BsrI	ACTGG	3 cut(s)	341, 1052, 1120
BssECI	CCNNGG	7 cut(s)	94, 141, 361, 402, 624, 882, 1152
BssMI	GATC	5 cut(s)	282, 514, 588, 916, 967
BssNAI	GTATAC	1 cut(s)	640
BssT1I	CCWWGG	4 cut(s)	94, 141, 361, 1152
Bst1107I	GTATAC	1 cut(s)	640
Bst2UI	CCWGG	1 cut(s)	625
Bst4CI	ACNGT	4 cut(s)	712, 883, 1077, 1231
Bst6I	CTCTTC	1 cut(s)	83
BstC8I	GCNNGC	5 cut(s)	109, 183, 480, 867, 1221
BstDEI	CTNAG	1 cut(s)	1207
BstDSI	CCRYGG	3 cut(s)	94, 402, 882
BstF5I	GGATG	7 cut(s)	231, 726, 862, 870, 892, 1162, 1204
BstHHI	GCGC	1 cut(s)	1042
BstKTI	GATC	5 cut(s)	285, 517, 591, 919, 970
BstMAI	GTCTC	3 cut(s)	461, 1069, 1207
BstMBI	GATC	5 cut(s)	282, 514, 588, 916, 967
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstNI	CCWGG	1 cut(s)	625
BstNSI	RCATGY	1 cut(s)	869
BstSCI	CCNGG	1 cut(s)	623
BstSFI	CTRYAG	2 cut(s)	371, 711
BstV1I	GCAGC	1 cut(s)	266
BstV2I	GAAGAC	2 cut(s)	156, 789
BstX2I	RGATCY	1 cut(s)	916
BstYI	RGATCY	1 cut(s)	916
BstZ17I	GTATAC	1 cut(s)	640
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	2 cut(s)	185, 629
BtgI	CCRYGG	3 cut(s)	94, 402, 882
BtsCI	GGATG	7 cut(s)	231, 726, 862, 870, 892, 1162, 1204
BtsIMutI	CAGTG	1 cut(s)	510
BveI	ACCTGC	1 cut(s)	779
Cac8I	GCNNGC	5 cut(s)	109, 183, 480, 867, 1221
CfoI	GCGC	1 cut(s)	1042
Cfr13I	GGNCC	1 cut(s)	627
CseI	GACGC	2 cut(s)	161, 794
Csp6I	GTAC	4 cut(s)	30, 368, 595, 1051
CviAII	CATG	3 cut(s)	95, 717, 866
CviQI	GTAC	4 cut(s)	30, 368, 595, 1051
DdeI	CTNAG	1 cut(s)	1207
DpnI	GATC	5 cut(s)	284, 516, 590, 918, 969
DpnII	GATC	5 cut(s)	282, 514, 588, 916, 967
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	358
Eco130I	CCWWGG	4 cut(s)	94, 141, 361, 1152
Eco147I	AGGCCT	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	897
Eco88I	CYCGRG	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	358
EcoRI	GAATTC	2 cut(s)	4, 1023
EcoRII	CCWGG	1 cut(s)	623
EcoT14I	CCWWGG	4 cut(s)	94, 141, 361, 1152
EcoT38I	GRGCYC	1 cut(s)	360
ErhI	CCWWGG	4 cut(s)	94, 141, 361, 1152
FaeI	CATG	3 cut(s)	98, 720, 869
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	3 cut(s)	94, 716, 865
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	639
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	7 cut(s)	218, 733, 857, 869, 899, 1169, 1211
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	3 cut(s)	362, 479, 1085
GlaI	GCGC	1 cut(s)	1041
GluI	GCNGC	1 cut(s)	255
GsaI	CCCAGC	1 cut(s)	1072
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	185, 629
HapII	CCGG	1 cut(s)	845
HgaI	GACGC	2 cut(s)	161, 794
HhaI	GCGC	1 cut(s)	1042
Hin1II	CATG	3 cut(s)	98, 720, 869
Hin6I	GCGC	1 cut(s)	1040
HinP1I	GCGC	1 cut(s)	1040
HindIII	AAGCTT	2 cut(s)	64, 1000
HinfI	GANTC	1 cut(s)	806
HpaII	CCGG	1 cut(s)	845
HphI	GGTGA	2 cut(s)	496, 806
Hpy166II	GTNNAC	2 cut(s)	640, 928
Hpy188I	TCNGA	3 cut(s)	916, 1142, 1183
Hpy188III	TCNNGA	3 cut(s)	235, 246, 845
Hpy8I	GTNNAC	2 cut(s)	640, 928
HpyAV	CCTTC	2 cut(s)	196, 1154
HpyCH4III	ACNGT	4 cut(s)	712, 883, 1077, 1231
HpyCH4V	TGCA	8 cut(s)	273, 531, 574, 611, 724, 865, 879, 1171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	1 cut(s)	1207
Hsp92II	CATG	3 cut(s)	98, 720, 869
HspAI	GCGC	1 cut(s)	1040
Kpn2I	TCCGGA	1 cut(s)	844
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	5 cut(s)	282, 514, 588, 916, 967
LmnI	GCTCC	5 cut(s)	363, 404, 491, 1058, 1216
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	2 cut(s)	94, 711
MaeI	CTAG	3 cut(s)	362, 479, 1085
MalI	GATC	5 cut(s)	284, 516, 590, 918, 969
MboI	GATC	5 cut(s)	282, 514, 588, 916, 967
MboII	GAAGA	8 cut(s)	3, 6, 70, 161, 794, 801, 938, 977
MflI	RGATCY	1 cut(s)	916
MhlI	GDGCHC	2 cut(s)	360, 496
MnlI	CCTC	6 cut(s)	236, 239, 286, 550, 553, 841
MroI	TCCGGA	1 cut(s)	844
MseI	TTAA	4 cut(s)	117, 159, 198, 380
MslI	CAYNNNNRTG	1 cut(s)	959
MspA1I	CMGCKG	1 cut(s)	923
MspI	CCGG	1 cut(s)	845
MspR9I	CCNGG	1 cut(s)	625
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	625
MwoI	GCNNNNNNNGC	1 cut(s)	384
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	5 cut(s)	282, 514, 588, 916, 967
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	3 cut(s)	98, 720, 869
NlaIV	GGNNCC	2 cut(s)	400, 1218
NspI	RCATGY	1 cut(s)	869
PaeI	GCATGC	1 cut(s)	869
PaeR7I	CTCGAG	1 cut(s)	244
PaqCI	CACCTGC	1 cut(s)	779
PceI	AGGCCT	1 cut(s)	185
PctI	GAATGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	806
PkrI	GCNGC	1 cut(s)	256
PsiI	TTATAA	1 cut(s)	333
Psp124BI	GAGCTC	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	623
PspFI	CCCAGC	1 cut(s)	1068
PspGI	CCWGG	1 cut(s)	623
PspN4I	GGNNCC	2 cut(s)	400, 1218
PspPI	GGNCC	1 cut(s)	627
PsuI	RGATCY	1 cut(s)	916
PvuII	CAGCTG	1 cut(s)	923
RsaI	GTAC	4 cut(s)	31, 369, 596, 1052
RsaNI	GTAC	4 cut(s)	30, 368, 595, 1051
RseI	CAYNNNNRTG	1 cut(s)	959
SacI	GAGCTC	1 cut(s)	360
SaqAI	TTAA	4 cut(s)	117, 159, 198, 380
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	5 cut(s)	282, 514, 588, 916, 967
Sau96I	GGNCC	1 cut(s)	627
ScaI	AGTACT	1 cut(s)	596
ScrFI	CCNGG	1 cut(s)	625
SduI	GDGCHC	2 cut(s)	360, 496
SfaNI	GCATC	2 cut(s)	94, 711
SfcI	CTRYAG	2 cut(s)	371, 711
Sfr274I	CTCGAG	1 cut(s)	244
SlaI	CTCGAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	959
SmlI	CTYRAG	2 cut(s)	244, 277
SmoI	CTYRAG	2 cut(s)	244, 277
SphI	GCATGC	1 cut(s)	869
SseBI	AGGCCT	1 cut(s)	185
SspI	AATATT	1 cut(s)	269
SspMI	CTAG	3 cut(s)	362, 479, 1085
SstI	GAGCTC	1 cut(s)	360
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	623
StyI	CCWWGG	4 cut(s)	94, 141, 361, 1152
TaaI	ACNGT	4 cut(s)	712, 883, 1077, 1231
TaqI	TCGA	2 cut(s)	245, 321
TatI	WGTACW	2 cut(s)	29, 594
TfiI	GAWTC	1 cut(s)	806
Tru1I	TTAA	4 cut(s)	117, 159, 198, 380
Tru9I	TTAA	4 cut(s)	117, 159, 198, 380
TscAI	CASTG	1 cut(s)	517
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	8 cut(s)	6, 17, 70, 140, 447, 490, 873, 1173
TspGWI	ACGGA	2 cut(s)	391, 770
TspRI	CASTG	1 cut(s)	517
XapI	RAATTY	2 cut(s)	4, 1023
XceI	RCATGY	1 cut(s)	869
XcmI	CCANNNNNNNNNTGG	2 cut(s)	173, 714
XhoI	CTCGAG	1 cut(s)	244
XmaJI	CCTAGG	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	639
XspI	CTAG	3 cut(s)	362, 479, 1085
ZrmI	AGTACT	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.