Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006267

Physical Location & Seq

Genomic Coordinates Forward (+)

14268422 .. 14283031

Gene Structure 14610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGAATTCATCTTCTTCATCATCATCTTGTACTTGCTGTCTTAGAACAAGAACTTGGGTGCGAAGCTTGGTTTTTCTCTTCGTCGTGCTGTGCCATGGAGTAGATGCGAGCAGTATTAAGTCTATGAAAGTGAGCGTTTCCAAGGTGGAAGACGCAGTTAATTTCCATATATATTATGGGCAGGCCTTCAAAGTCATTAAGAATGCCATTGACGGCAAGAGCTACCTCCTGATCCAGAACAACTCGAGAATGGCAGCAAGGACAAAATATTGCACCTCAAGGATCAAATCGTTTGTCGTCCCCTTATCAAATTACTCAATTGACACCGATTATAATTTTCCAGTTTCCTTTTTTGAGCTGCTAGGCGTACTACAGAGCTTAAAGGGCATTACATCAGGCTCCGTGGCTTCTCAATGCGTATTGAAATTGTATGAAGCTGGAGAAATTAGGATAATCAACAAAAGTGACACACAAGAGCTAGCACAATATGGAGCACATTTCATCACCAACACTGATCAACCACAATCTTGCAATTTTGCCTCTTTTATTCCTTATGGAGAGGATACTCCTTTGCAGAGAGCAGAATGGATCAAGTACTTGGGAGTGTTTGCAAATGCTGAAACCAGGGCCAATCAAGTATACAATGTTGTTAGAGAGAATTATCAATGTTTGCTCAATCTCTCAAAAAGTAGAACATCGTTCAAACCAACTGTAGCATGGATGCAGTATGATAATGGTATATGGTCTTTCACAACGGAAATATACAAGTTGAAGTATGTGGAAGACGCAGGCGGTGAGAATGTGGATGGTTCTATCAACAAAATTACCTATAACATCTCTAATCCGGAGGATTTGGATGAATTGCATGCCATCCTTTGCACCGTGGATGTGGCTATTGACGAAACATATACTTCAGATCCAGCTGTTTACAATACATCAACATTTCTTCAAAACATAAAAGTGGAAGATCATTCTTGTTTTAAATATAGCCAAGGTAGCTGTAGGTATTATATTCGCATCCAAACAATAAGATCCTCTTGTTGGCTCAGCTGTTACATGCAGAACAAAAATAGGTCATGGTATCCTCATGTTATACATGAACACAATCTTGCCTTTGGGTTACTCATATTACTATTTTATCCAAGTTCTAACATAAAAACAGCATACTTTAGATCAGCAGAAAAGCATAAAATCTCTGTTTCAATCTCTTTCACTGGCTGCCCAAGAATTTGGGGATATGCAACAGAACCAACACGGGTATCATGTTTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

424

Amino Acids

48.14

Weight (kDa)

8.38

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65900 AT1G65900
fragaria_vesca	FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290
malus_domestica	MD17G1286700.v1.1
prunus_persica	Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1
pyrus_communis	pycom17g27010
rosa_chinensis	RchiOBHm_Chr3g0488721
rosa_laevigata	RLG00000022928
rosa_multiflora	Rmu_sc0000265.1_g000020 Rmu_sc0001208.1_g000077
rosa_roxburghii	Rroxscaffold_6G00393930
rosa_rugosa	Rorug03G0241000 Rorug03G0241100
rosa_samantha	Rh3AG289300 Rh3BG326100 Rh3CG323800 Rh3DG322100
rosa_wichuraiana	Rw3G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AccI	GTMKAC	1 cut(s)	639
AccIII	TCCGGA	1 cut(s)	844
AciI	CCGC	1 cut(s)	792
AclWI	GGATC	5 cut(s)	226, 290, 596, 911, 1026
AcsI	RAATTY	2 cut(s)	4, 1227
AcuI	CTGAAG	1 cut(s)	897
AfaI	GTAC	3 cut(s)	31, 369, 596
AfiI	CCNNNNNNNGG	1 cut(s)	1041
AgsI	TTSAA	6 cut(s)	190, 424, 703, 772, 950, 1203
AjnI	CCWGG	1 cut(s)	623
AjuI	GAANNNNNNNTTGG	2 cut(s)	37, 69
AluBI	AGCT	9 cut(s)	66, 222, 358, 378, 437, 478, 923, 999, 1050
AluI	AGCT	9 cut(s)	66, 222, 358, 378, 437, 478, 923, 999, 1050
Alw21I	GWGCWC	1 cut(s)	496
AlwI	GGATC	5 cut(s)	226, 290, 596, 911, 1026
Ama87I	CYCGRG	1 cut(s)	244
Aor13HI	TCCGGA	1 cut(s)	844
AoxI	GGCC	2 cut(s)	183, 627
ApeKI	GCWGC	3 cut(s)	254, 358, 1218
ApoI	RAATTY	2 cut(s)	4, 1227
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AspS9I	GGNCC	1 cut(s)	627
AsuHPI	GGTGA	2 cut(s)	496, 806
AsuNHI	GCTAGC	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	244
BaeI	ACNNNNGTAYC	2 cut(s)	1242, 1275
BbsI	GAAGAC	2 cut(s)	156, 789
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	3 cut(s)	266, 345, 1205
BccI	CCATC	2 cut(s)	800, 878
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	625
BciVI	GTATCC	2 cut(s)	556, 1092
BclI	TGATCA	1 cut(s)	514
BfaI	CTAG	2 cut(s)	362, 479
BfmI	CTRYAG	3 cut(s)	371, 711, 1000
BfuI	GTATCC	2 cut(s)	556, 1092
BisI	GCNGC	3 cut(s)	255, 359, 1219
BlpI	GCTNAGC	1 cut(s)	1046
BlsI	GCNGC	3 cut(s)	256, 360, 1220
BmcAI	AGTACT	1 cut(s)	596
Bme1390I	CCNGG	1 cut(s)	625
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	627
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	625
BmsI	GCATC	3 cut(s)	94, 711, 1026
BmtI	GCTAGC	1 cut(s)	482
BpiI	GAAGAC	2 cut(s)	156, 789
BpmI	CTGGAG	1 cut(s)	459
Bpu1102I	GCTNAGC	1 cut(s)	1046
BpuEI	CTTGAG	1 cut(s)	262
BsaJI	CCNNGG	6 cut(s)	94, 141, 402, 624, 882, 991
BsaWI	WCCGGW	1 cut(s)	844
Bsc4I	CCNNNNNNNGG	1 cut(s)	1041
Bse1I	ACTGG	2 cut(s)	341, 1219
BseAI	TCCGGA	1 cut(s)	844
BseBI	CCWGG	1 cut(s)	625
BseDI	CCNNGG	6 cut(s)	94, 141, 402, 624, 882, 991
BseGI	GGATG	6 cut(s)	726, 811, 862, 870, 892, 1017
BseLI	CCNNNNNNNGG	1 cut(s)	1041
BseMII	CTCAG	1 cut(s)	1060
BseNI	ACTGG	2 cut(s)	341, 1219
BseXI	GCAGC	3 cut(s)	266, 345, 1205
BshFI	GGCC	2 cut(s)	185, 629
BsiHKAI	GWGCWC	1 cut(s)	496
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	845
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	1041
BsmFI	GGGAC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	2 cut(s)	185, 629
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp13I	TCCGGA	1 cut(s)	844
Bsp143I	GATC	8 cut(s)	231, 282, 514, 588, 916, 967, 1031, 1172
Bsp1720I	GCTNAGC	1 cut(s)	1046
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	1 cut(s)	792
BspANI	GGCC	2 cut(s)	185, 629
BspCNI	CTCAG	1 cut(s)	1059
BspEI	TCCGGA	1 cut(s)	844
BspLI	GGNNCC	1 cut(s)	400
BspOI	GCTAGC	1 cut(s)	482
BspPI	GGATC	5 cut(s)	226, 290, 596, 911, 1026
BsrI	ACTGG	2 cut(s)	341, 1219
BssECI	CCNNGG	6 cut(s)	94, 141, 402, 624, 882, 991
BssMI	GATC	8 cut(s)	231, 282, 514, 588, 916, 967, 1031, 1172
BssNAI	GTATAC	1 cut(s)	640
BssT1I	CCWWGG	3 cut(s)	94, 141, 991
Bst1107I	GTATAC	1 cut(s)	640
Bst2UI	CCWGG	1 cut(s)	625
Bst4CI	ACNGT	2 cut(s)	712, 883
Bst6I	CTCTTC	1 cut(s)	83
BstC8I	GCNNGC	5 cut(s)	109, 183, 480, 790, 867
BstDEI	CTNAG	2 cut(s)	41, 1046
BstDSI	CCRYGG	3 cut(s)	94, 402, 882
BstF5I	GGATG	6 cut(s)	726, 811, 862, 870, 892, 1017
BstKTI	GATC	8 cut(s)	234, 285, 517, 591, 919, 970, 1034, 1175
BstMBI	GATC	8 cut(s)	231, 282, 514, 588, 916, 967, 1031, 1172
BstMWI	GCNNNNNNNGC	2 cut(s)	384, 996
BstNI	CCWGG	1 cut(s)	625
BstNSI	RCATGY	2 cut(s)	869, 1060
BstSCI	CCNGG	1 cut(s)	623
BstSFI	CTRYAG	3 cut(s)	371, 711, 1000
BstV1I	GCAGC	3 cut(s)	266, 345, 1205
BstV2I	GAAGAC	2 cut(s)	156, 789
BstX2I	RGATCY	2 cut(s)	916, 1031
BstXI	CCANNNNNNTGG	1 cut(s)	1230
BstYI	RGATCY	2 cut(s)	916, 1031
BstZ17I	GTATAC	1 cut(s)	640
BsuI	GTATCC	2 cut(s)	556, 1092
BsuRI	GGCC	2 cut(s)	185, 629
BtgI	CCRYGG	3 cut(s)	94, 402, 882
BtsCI	GGATG	6 cut(s)	726, 811, 862, 870, 892, 1017
BtsIMutI	CAGTG	2 cut(s)	510, 1212
Cac8I	GCNNGC	5 cut(s)	109, 183, 480, 790, 867
Cfr13I	GGNCC	1 cut(s)	627
CseI	GACGC	2 cut(s)	161, 794
Csp6I	GTAC	3 cut(s)	30, 368, 595
CviAII	CATG	8 cut(s)	95, 717, 866, 1057, 1077, 1088, 1097, 1263
CviQI	GTAC	3 cut(s)	30, 368, 595
DdeI	CTNAG	2 cut(s)	41, 1046
DpnI	GATC	8 cut(s)	233, 284, 516, 590, 918, 969, 1033, 1174
DpnII	GATC	8 cut(s)	231, 282, 514, 588, 916, 967, 1031, 1172
DraI	TTTAAA	1 cut(s)	982
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco130I	CCWWGG	3 cut(s)	94, 141, 991
Eco147I	AGGCCT	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	897
Eco88I	CYCGRG	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	623
EcoT14I	CCWWGG	3 cut(s)	94, 141, 991
ErhI	CCWWGG	3 cut(s)	94, 141, 991
FaeI	CATG	8 cut(s)	98, 720, 869, 1060, 1080, 1091, 1100, 1266
FalI	AAGNNNNNCTT	2 cut(s)	1021, 1053
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	8 cut(s)	94, 716, 865, 1056, 1076, 1087, 1096, 1262
FbaI	TGATCA	1 cut(s)	514
FblI	GTMKAC	1 cut(s)	639
Fnu4HI	GCNGC	3 cut(s)	255, 359, 1219
FokI	GGATG	6 cut(s)	733, 818, 857, 869, 899, 1004
Fsp4HI	GCNGC	3 cut(s)	255, 359, 1219
FspBI	CTAG	2 cut(s)	362, 479
GluI	GCNGC	3 cut(s)	255, 359, 1219
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	185, 629
HapII	CCGG	1 cut(s)	845
HgaI	GACGC	2 cut(s)	161, 794
Hin1II	CATG	8 cut(s)	98, 720, 869, 1060, 1080, 1091, 1100, 1266
HindIII	AAGCTT	1 cut(s)	64
HpaII	CCGG	1 cut(s)	845
HphI	GGTGA	2 cut(s)	496, 806
Hpy166II	GTNNAC	2 cut(s)	640, 928
Hpy188I	TCNGA	1 cut(s)	916
Hpy188III	TCNNGA	5 cut(s)	229, 235, 246, 845, 1272
Hpy8I	GTNNAC	2 cut(s)	640, 928
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	2 cut(s)	712, 883
HpyCH4V	TGCA	9 cut(s)	273, 531, 574, 611, 724, 865, 879, 1060, 1241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	384, 996
HpyF3I	CTNAG	2 cut(s)	41, 1046
Hsp92II	CATG	8 cut(s)	98, 720, 869, 1060, 1080, 1091, 1100, 1266
Kpn2I	TCCGGA	1 cut(s)	844
Ksp22I	TGATCA	1 cut(s)	514
Kzo9I	GATC	8 cut(s)	231, 282, 514, 588, 916, 967, 1031, 1172
LmnI	GCTCC	2 cut(s)	404, 491
Lsp1109I	GCAGC	3 cut(s)	266, 345, 1205
LweI	GCATC	3 cut(s)	94, 711, 1026
MaeI	CTAG	2 cut(s)	362, 479
MaeIII	GTNAC	3 cut(s)	464, 1052, 1119
MalI	GATC	8 cut(s)	233, 284, 516, 590, 918, 969, 1033, 1174
MboI	GATC	8 cut(s)	231, 282, 514, 588, 916, 967, 1031, 1172
MboII	GAAGA	7 cut(s)	3, 6, 70, 161, 794, 938, 977
MfeI	CAATTG	1 cut(s)	318
MflI	RGATCY	2 cut(s)	916, 1031
MhlI	GDGCHC	1 cut(s)	496
MnlI	CCTC	7 cut(s)	236, 286, 550, 553, 841, 1045, 1095
MroI	TCCGGA	1 cut(s)	844
MseI	TTAA	5 cut(s)	117, 159, 198, 380, 981
MslI	CAYNNNNRTG	1 cut(s)	959
MspA1I	CMGCKG	2 cut(s)	923, 1050
MspI	CCGG	1 cut(s)	845
MspR9I	CCNGG	1 cut(s)	625
MunI	CAATTG	1 cut(s)	318
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	625
MwoI	GCNNNNNNNGC	2 cut(s)	384, 996
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	8 cut(s)	231, 282, 514, 588, 916, 967, 1031, 1172
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	8 cut(s)	98, 720, 869, 1060, 1080, 1091, 1100, 1266
NlaIV	GGNNCC	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	464
NspI	RCATGY	2 cut(s)	869, 1060
PaeI	GCATGC	1 cut(s)	869
PaeR7I	CTCGAG	1 cut(s)	244
PceI	AGGCCT	1 cut(s)	185
PctI	GAATGC	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	256, 360, 1220
PsiI	TTATAA	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	623
PspGI	CCWGG	1 cut(s)	623
PspN4I	GGNNCC	1 cut(s)	400
PspPI	GGNCC	1 cut(s)	627
PsuI	RGATCY	2 cut(s)	916, 1031
PvuII	CAGCTG	2 cut(s)	923, 1050
RsaI	GTAC	3 cut(s)	31, 369, 596
RsaNI	GTAC	3 cut(s)	30, 368, 595
RseI	CAYNNNNRTG	1 cut(s)	959
SaqAI	TTAA	5 cut(s)	117, 159, 198, 380, 981
SatI	GCNGC	3 cut(s)	255, 359, 1219
Sau3AI	GATC	8 cut(s)	231, 282, 514, 588, 916, 967, 1031, 1172
Sau96I	GGNCC	1 cut(s)	627
ScaI	AGTACT	1 cut(s)	596
ScrFI	CCNGG	1 cut(s)	625
SduI	GDGCHC	1 cut(s)	496
SfaNI	GCATC	3 cut(s)	94, 711, 1026
SfcI	CTRYAG	3 cut(s)	371, 711, 1000
Sfr274I	CTCGAG	1 cut(s)	244
SlaI	CTCGAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	959
SmlI	CTYRAG	2 cut(s)	244, 277
SmoI	CTYRAG	2 cut(s)	244, 277
SphI	GCATGC	1 cut(s)	869
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	1 cut(s)	792
SspI	AATATT	1 cut(s)	269
SspMI	CTAG	2 cut(s)	362, 479
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	623
StyI	CCWWGG	3 cut(s)	94, 141, 991
TaaI	ACNGT	2 cut(s)	712, 883
TaqI	TCGA	1 cut(s)	245
TatI	WGTACW	2 cut(s)	29, 594
Tru1I	TTAA	5 cut(s)	117, 159, 198, 380, 981
Tru9I	TTAA	5 cut(s)	117, 159, 198, 380, 981
TscAI	CASTG	2 cut(s)	517, 1219
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	3 cut(s)	254, 358, 1218
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	7 cut(s)	6, 17, 140, 447, 490, 873, 1113
TspGWI	ACGGA	2 cut(s)	391, 770
TspRI	CASTG	2 cut(s)	517, 1219
XapI	RAATTY	2 cut(s)	4, 1227
XceI	RCATGY	2 cut(s)	869, 1060
XcmI	CCANNNNNNNNNTGG	2 cut(s)	173, 714
XhoI	CTCGAG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	639
XspI	CTAG	2 cut(s)	362, 479
ZrmI	AGTACT	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.