Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000265.1

Orthogroup ID

OG0006267

Physical Location & Seq

Genomic Coordinates Forward (+)

66320 .. 68855

Gene Structure 2536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000265.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atgttgttaacggtggttatgcagctcctaggagtactacagagcttaaagggcattacatcaggctccgtggcttctcaatgcgtattgaaattgtatgaagctggagaaattcgtataatcaacaaaagtgagacacaagagctagcacaatatggagcacatttcatcaccaacactgatcaaccacaatcttgcaattttgcctcttttattccttatggagaggatactcctttgcagagagcagaatggatcaagtacttgggagtgtttgcaaatgctgaaaccagggccaatcaagtatacaatgttgttagagagaattatcaatgtttgctcaatctctcaaaaagcagaacatcgttcaaaccaactgtagcatggatgcagtatgataatggtatatggtctttcacaacggaaatatacaagttgaagtatgtggaagacgcaggtggtgagaatgtggatgcttctatcaacaaaattacctataacatctctaatccggaggatttggatgaattgcatgccatcctttgcaccgtggatgtggctattgacgaaacatttacttcagatccagctgtttacaatacatcaatatttcttcaaaacataaaagtggaagatcattcttgttttgtttttctctctaaccaaagtttatggagatacgataaaagaattcaaaactcaactgcgcttgactggtacaatggagcagtctcccagccacagttggttctagcagattttattgaagttttattccctactggaaactatacaacaacatatttcagaaatatagccaaggatgaaggagttgtgcagattacttctgaaatgtgtgatagggatgtctccttagcaatggagccagcaataacagtttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

33.96

Weight (kDa)

4.58

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65900 AT1G65900
fragaria_vesca	FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290
malus_domestica	MD17G1286700.v1.1
prunus_persica	Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1
pyrus_communis	pycom17g27010
rosa_chinensis	RchiOBHm_Chr3g0488721
rosa_laevigata	RLG00000022928
rosa_multiflora	Rmu_sc0000265.1_g000020 Rmu_sc0001208.1_g000077
rosa_roxburghii	Rroxscaffold_6G00393930
rosa_rugosa	Rorug03G0241000 Rorug03G0241100
rosa_samantha	Rh3AG289300 Rh3BG326100 Rh3CG323800 Rh3DG322100
rosa_wichuraiana	Rw3G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	446
Acc36I	ACCTGC	1 cut(s)	446
AccI	GTMKAC	1 cut(s)	306
AccIII	TCCGGA	1 cut(s)	511
AclWI	GGATC	2 cut(s)	263, 578
AcsI	RAATTY	2 cut(s)	111, 690
AcuI	CTGAAG	1 cut(s)	564
AfaI	GTAC	3 cut(s)	36, 263, 719
AgsI	TTSAA	6 cut(s)	91, 370, 439, 617, 695, 767
AjnI	CCWGG	1 cut(s)	290
AluBI	AGCT	5 cut(s)	25, 45, 104, 145, 590
AluI	AGCT	5 cut(s)	25, 45, 104, 145, 590
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	3 cut(s)	128, 736, 874
AlwI	GGATC	2 cut(s)	263, 578
Aor13HI	TCCGGA	1 cut(s)	511
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	2 cut(s)	111, 690
AspA2I	CCTAGG	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	709
AspS9I	GGNCC	1 cut(s)	294
AsuHPI	GGTGA	2 cut(s)	163, 473
AsuNHI	GCTAGC	1 cut(s)	145
AvrII	CCTAGG	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	545
BciT130I	CCWGG	1 cut(s)	292
BciVI	GTATCC	1 cut(s)	223
BclI	TGATCA	1 cut(s)	181
BcoDI	GTCTC	3 cut(s)	128, 736, 874
BfaI	CTAG	3 cut(s)	29, 146, 752
BfmI	CTRYAG	2 cut(s)	38, 378
BfuAI	ACCTGC	1 cut(s)	446
BfuI	GTATCC	1 cut(s)	223
BisI	GCNGC	1 cut(s)	23
BlnI	CCTAGG	1 cut(s)	28
BlsI	GCNGC	1 cut(s)	24
BmcAI	AGTACT	2 cut(s)	36, 263
Bme1390I	CCNGG	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	2 cut(s)	67, 885
BmrFI	CCNGG	1 cut(s)	292
BmsI	GCATC	2 cut(s)	378, 463
BmtI	GCTAGC	1 cut(s)	149
BpiI	GAAGAC	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	874
BsaJI	CCNNGG	5 cut(s)	28, 69, 291, 549, 819
BsaWI	WCCGGW	1 cut(s)	511
Bse1I	ACTGG	2 cut(s)	719, 787
Bse3DI	GCAATG	1 cut(s)	885
BseAI	TCCGGA	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	292
BseDI	CCNNGG	5 cut(s)	28, 69, 291, 549, 819
BseGI	GGATG	7 cut(s)	393, 478, 529, 537, 559, 829, 871
BseMI	GCAATG	1 cut(s)	885
BseNI	ACTGG	2 cut(s)	719, 787
BseXI	GCAGC	1 cut(s)	34
BseYI	CCCAGC	1 cut(s)	735
BsgI	GTGCAG	1 cut(s)	857
BshFI	GGCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	512
BsmAI	GTCTC	3 cut(s)	128, 736, 874
BsnI	GGCC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp13I	TCCGGA	1 cut(s)	511
Bsp143I	GATC	4 cut(s)	181, 255, 583, 634
BspANI	GGCC	1 cut(s)	296
BspEI	TCCGGA	1 cut(s)	511
BspLI	GGNNCC	2 cut(s)	67, 885
BspMI	ACCTGC	1 cut(s)	446
BspOI	GCTAGC	1 cut(s)	149
BspPI	GGATC	2 cut(s)	263, 578
BsrDI	GCAATG	1 cut(s)	885
BsrI	ACTGG	2 cut(s)	719, 787
BssECI	CCNNGG	5 cut(s)	28, 69, 291, 549, 819
BssMI	GATC	4 cut(s)	181, 255, 583, 634
BssNAI	GTATAC	1 cut(s)	307
BssT1I	CCWWGG	2 cut(s)	28, 819
Bst1107I	GTATAC	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	292
Bst4CI	ACNGT	5 cut(s)	13, 379, 550, 744, 898
BstC8I	GCNNGC	3 cut(s)	147, 534, 888
BstDEI	CTNAG	1 cut(s)	874
BstDSI	CCRYGG	2 cut(s)	69, 549
BstF5I	GGATG	7 cut(s)	393, 478, 529, 537, 559, 829, 871
BstHHI	GCGC	1 cut(s)	709
BstKTI	GATC	4 cut(s)	184, 258, 586, 637
BstMAI	GTCTC	3 cut(s)	128, 736, 874
BstMBI	GATC	4 cut(s)	181, 255, 583, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	292
BstNSI	RCATGY	1 cut(s)	536
BstSCI	CCNGG	1 cut(s)	290
BstSFI	CTRYAG	2 cut(s)	38, 378
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BstZ17I	GTATAC	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	296
BtgI	CCRYGG	2 cut(s)	69, 549
BtsCI	GGATG	7 cut(s)	393, 478, 529, 537, 559, 829, 871
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	3 cut(s)	147, 534, 888
CfoI	GCGC	1 cut(s)	709
Cfr13I	GGNCC	1 cut(s)	294
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	3 cut(s)	35, 262, 718
CviAII	CATG	2 cut(s)	384, 533
CviQI	GTAC	3 cut(s)	35, 262, 718
DdeI	CTNAG	1 cut(s)	874
DpnI	GATC	4 cut(s)	183, 257, 585, 636
DpnII	GATC	4 cut(s)	181, 255, 583, 634
Eco130I	CCWWGG	2 cut(s)	28, 819
Eco57I	CTGAAG	1 cut(s)	564
EcoRI	GAATTC	1 cut(s)	690
EcoRII	CCWGG	1 cut(s)	290
EcoT14I	CCWWGG	2 cut(s)	28, 819
ErhI	CCWWGG	2 cut(s)	28, 819
FaeI	CATG	2 cut(s)	387, 536
FatI	CATG	2 cut(s)	383, 532
FbaI	TGATCA	1 cut(s)	181
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	7 cut(s)	400, 485, 524, 536, 566, 836, 878
Fsp4HI	GCNGC	1 cut(s)	23
FspBI	CTAG	3 cut(s)	29, 146, 752
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	1 cut(s)	23
GsaI	CCCAGC	1 cut(s)	739
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	512
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	1 cut(s)	709
Hin1II	CATG	2 cut(s)	387, 536
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	512
HphI	GGTGA	2 cut(s)	163, 473
Hpy166II	GTNNAC	3 cut(s)	9, 307, 595
Hpy188I	TCNGA	3 cut(s)	583, 809, 850
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	3 cut(s)	9, 307, 595
HpyAV	CCTTC	1 cut(s)	821
HpyCH4III	ACNGT	5 cut(s)	13, 379, 550, 744, 898
HpyCH4V	TGCA	8 cut(s)	22, 198, 241, 278, 391, 532, 546, 838
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	1 cut(s)	874
Hsp92II	CATG	2 cut(s)	387, 536
HspAI	GCGC	1 cut(s)	707
Kpn2I	TCCGGA	1 cut(s)	511
Ksp22I	TGATCA	1 cut(s)	181
KspAI	GTTAAC	1 cut(s)	9
Kzo9I	GATC	4 cut(s)	181, 255, 583, 634
LmnI	GCTCC	5 cut(s)	30, 71, 158, 725, 883
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	2 cut(s)	378, 463
MaeI	CTAG	3 cut(s)	29, 146, 752
MalI	GATC	4 cut(s)	183, 257, 585, 636
MboI	GATC	4 cut(s)	181, 255, 583, 634
MboII	GAAGA	3 cut(s)	461, 605, 644
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	7 cut(s)	92, 111, 199, 325, 489, 527, 690
MnlI	CCTC	3 cut(s)	217, 220, 508
MroI	TCCGGA	1 cut(s)	511
MseI	TTAA	2 cut(s)	8, 47
MslI	CAYNNNNRTG	1 cut(s)	626
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	1 cut(s)	512
MspR9I	CCNGG	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	4 cut(s)	181, 255, 583, 634
NheI	GCTAGC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	387, 536
NlaIV	GGNNCC	2 cut(s)	67, 885
NspI	RCATGY	1 cut(s)	536
PaeI	GCATGC	1 cut(s)	536
PaqCI	CACCTGC	1 cut(s)	446
PkrI	GCNGC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	290
PspFI	CCCAGC	1 cut(s)	735
PspGI	CCWGG	1 cut(s)	290
PspN4I	GGNNCC	2 cut(s)	67, 885
PspPI	GGNCC	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	3 cut(s)	36, 263, 719
RsaNI	GTAC	3 cut(s)	35, 262, 718
RseI	CAYNNNNRTG	1 cut(s)	626
SaqAI	TTAA	2 cut(s)	8, 47
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	4 cut(s)	181, 255, 583, 634
Sau96I	GGNCC	1 cut(s)	294
ScaI	AGTACT	2 cut(s)	36, 263
ScrFI	CCNGG	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	7 cut(s)	27, 47, 106, 147, 460, 497, 592
SfaNI	GCATC	2 cut(s)	378, 463
SfcI	CTRYAG	2 cut(s)	38, 378
SmiMI	CAYNNNNRTG	1 cut(s)	626
SphI	GCATGC	1 cut(s)	536
Sse9I	AATT	7 cut(s)	92, 111, 199, 325, 489, 527, 690
SspI	AATATT	1 cut(s)	609
SspMI	CTAG	3 cut(s)	29, 146, 752
StyD4I	CCNGG	1 cut(s)	290
StyI	CCWWGG	2 cut(s)	28, 819
TaaI	ACNGT	5 cut(s)	13, 379, 550, 744, 898
TasI	AATT	7 cut(s)	92, 111, 199, 325, 489, 527, 690
TatI	WGTACW	2 cut(s)	34, 261
Tru1I	TTAA	2 cut(s)	8, 47
Tru9I	TTAA	2 cut(s)	8, 47
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	1 cut(s)	22
TspDTI	ATGAA	4 cut(s)	114, 157, 540, 840
TspGWI	ACGGA	2 cut(s)	58, 437
TspRI	CASTG	1 cut(s)	184
XapI	RAATTY	2 cut(s)	111, 690
XceI	RCATGY	1 cut(s)	536
XcmI	CCANNNNNNNNNTGG	1 cut(s)	381
XmaJI	CCTAGG	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	3 cut(s)	29, 146, 752
ZrmI	AGTACT	2 cut(s)	36, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.