Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006267

Physical Location & Seq

Genomic Coordinates Forward (+)

22516242 .. 22518359

Gene Structure 2118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0241100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGAAGAAGACAGCTCCTCTGGAGTTCGCCTAATCAGTTTTTCCTTAATACTAGCCCTAATTACGACGATGACGGCAGCATCTTACGACGAGTCGTCGTCGACGTGTTTGACGCTTTACGAACAAGGCGGTGCTCCCGCGGTTTTCCAATCCCCAAAATGCCCTCGCTGGAAGCGCGCCGATTCCCTCCAGCGTTGCCAGACCGCCGTGCGTCGAGGTCGGAGAAACCACCTCGAGGATCGTGCTCTGTGCGCTCTCGACCTTCGCATTCCGTTTCCTGGTGAATTAGGGATTAAGGAGGTTAAAGTTGGGATTGTGGCTGTTTTTGATGGGCATAATGGTGCTGAAGCAAGTGATATGGCTTCAAAGCTTTTATTGGAGTATTTCGTTTTGCATACCTATTTTCTTCTTGATTCTTCTGATGCATCGAATAAATATTCAAGAACAGCAATATTGCAAACTGGTGGAGAACTTTATACTTCAAATGGCGTATTCCGATCGCATCAATTGGATATTTCAAGGTTTAATCCTTCTTTGAAAGCAAAGTTTGATGATTCGCGTCATTTTGATATTTTGAAAGAAGCATTGTTGAGAGCAGTTCATGATATTGATGCAAAATTTTCTATGGAAGCATCTTGGAAAAATCTTGTATCTGGTACTACAGCCTCGATTATATTACTTGCTGATGGTCATATTTTAGTTGCCAATATTGGAGACTCAAAGGCTTTTCTGTGCTCAGAAAAATTCCAATCTCCTGCAGAGGCTAAAGCCGCTTATTTGAGATACAGGCGGGAAAGGCGTAATGGTGCCATATCATCTCCCTTAGGAAACTATAAGAAAAACTTTGAATTGGCTTCCTCCTCCTCTGGGTTGGTGCAGCTTTCTGTTAAGGAATTGACGAGAGATCATCATCCAGACAGAGATGATGAAAAATTCCGCGTGGAAACTGCTGGTGGCTATGTGGAATTGGGTGGTGTGCCTCGAGTAAATGGTCAGCTGGCTATTTCCAGATCTATTGGCGATATTTCCTTCAAAAGTTTCGGCGTTATATCTACACCAGAGTTGACCGACTGGCAACCCCTGACTGTAAATGATACCTATCTGGTTGCTGCATCTGATGGAGTTTTTGAGAAGCAGAGCCTGCAGGATGTTTGTGATTTATTGTGGGAAGCTCGGAGTTATGATTCTAGGAGATCGGAGTTCTCTTCCTCGCCGTGTTCATACTCATTAGCCGACTGCATCGTGAATGCTGCACTCGACAAGGGCAGCATGGATAATGTGGCAGCTGTTGTCGTTCCAATGATATCTACTTGGTTTCTTGAAAGGTTTTTCATGGAAAGATCAGTTTCAGAGGGGGACAGAAACTGTGAAGCATTAGGACTACAAAGTTCCACTGATGAGTGCACAGCTAATGACTTCAATTATGAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

477

Amino Acids

52.72

Weight (kDa)

5.37

Isoelectric Point (pI)

53.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	180 - 247	1.8e-06	Protein phosphatase 2C
PP2C	PF00481	297 - 427	1.8e-23	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65900 AT1G65900
fragaria_vesca	FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290
malus_domestica	MD17G1286700.v1.1
prunus_persica	Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1
pyrus_communis	pycom17g27010
rosa_chinensis	RchiOBHm_Chr3g0488721
rosa_laevigata	RLG00000022928
rosa_multiflora	Rmu_sc0000265.1_g000020 Rmu_sc0001208.1_g000077
rosa_roxburghii	Rroxscaffold_6G00393930
rosa_rugosa	Rorug03G0241000 Rorug03G0241100
rosa_samantha	Rh3AG289300 Rh3BG326100 Rh3CG323800 Rh3DG322100
rosa_wichuraiana	Rw3G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	806
AccI	GTMKAC	1 cut(s)	101
AccII	CGCG	4 cut(s)	140, 177, 559, 939
AciI	CCGC	7 cut(s)	129, 138, 140, 204, 771, 790, 937
AclWI	GGATC	1 cut(s)	246
AcsI	RAATTY	3 cut(s)	617, 743, 932
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	1 cut(s)	658
AfiI	CCNNNNNNNGG	3 cut(s)	235, 278, 867
AflIII	ACRYGT	1 cut(s)	104
AhdI	GACNNNNNGTC	1 cut(s)	94
AjiI	CACGTC	1 cut(s)	105
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	7 cut(s)	15, 370, 880, 997, 1172, 1286, 1409
AluI	AGCT	7 cut(s)	15, 370, 880, 997, 1172, 1286, 1409
Alw21I	GWGCWC	4 cut(s)	136, 247, 737, 1406
Alw26I	GTCTC	1 cut(s)	708
Alw44I	GTGCAC	1 cut(s)	1402
AlwI	GGATC	1 cut(s)	246
AlwNI	CAGNNNCTG	2 cut(s)	1141, 1365
Ama87I	CYCGRG	2 cut(s)	233, 981
ApaLI	GTGCAC	1 cut(s)	1402
ApeKI	GCWGC	6 cut(s)	77, 877, 1109, 1250, 1266, 1283
ApoI	RAATTY	3 cut(s)	617, 743, 932
AspLEI	GCGC	3 cut(s)	177, 179, 254
AsuHPI	GGTGA	1 cut(s)	293
AvaI	CYCGRG	2 cut(s)	233, 981
AxyI	CCTNAGG	1 cut(s)	823
BaeGI	GKGCMC	1 cut(s)	1406
BanI	GGYRCC	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	4 cut(s)	136, 247, 737, 1406
BbvI	GCAGC	6 cut(s)	89, 889, 1096, 1237, 1278, 1295
BccI	CCATC	3 cut(s)	323, 680, 1112
BceAI	ACGGC	3 cut(s)	90, 191, 1198
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	708
BfaI	CTAG	2 cut(s)	53, 1188
BfmI	CTRYAG	3 cut(s)	660, 756, 1142
BglII	AGATCT	1 cut(s)	1010
BisI	GCNGC	7 cut(s)	78, 771, 878, 1110, 1251, 1267, 1284
BlsI	GCNGC	7 cut(s)	79, 772, 879, 1111, 1252, 1268, 1285
Bme1390I	CCNGG	1 cut(s)	279
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmeT110I	CYCGRG	2 cut(s)	233, 981
BmgBI	CACGTC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	808
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	8 cut(s)	89, 412, 434, 511, 601, 641, 1121, 1248
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	2 cut(s)	42, 173
BsaBI	GATNNNNATC	2 cut(s)	909, 1098
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 278, 867
Bse1I	ACTGG	2 cut(s)	466, 1076
Bse21I	CCTNAGG	1 cut(s)	823
Bse8I	GATNNNNATC	2 cut(s)	909, 1098
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	910, 1153
BseJI	GATNNNNATC	2 cut(s)	909, 1098
BseLI	CCNNNNNNNGG	3 cut(s)	235, 278, 867
BseMII	CTCAG	1 cut(s)	750
BseNI	ACTGG	2 cut(s)	466, 1076
BsePI	GCGCGC	1 cut(s)	175
BseRI	GAGGAG	3 cut(s)	7, 850, 853
BseSI	GKGCMC	1 cut(s)	1406
BseXI	GCAGC	6 cut(s)	89, 889, 1096, 1237, 1278, 1295
BsgI	GTGCAG	2 cut(s)	896, 1236
Bsh1236I	CGCG	4 cut(s)	140, 177, 559, 939
Bsh1285I	CGRYCG	1 cut(s)	500
BshNI	GGYRCC	1 cut(s)	806
BsiEI	CGRYCG	1 cut(s)	500
BsiHKAI	GWGCWC	4 cut(s)	136, 247, 737, 1406
BsiHKCI	CYCGRG	2 cut(s)	233, 981
BslFI	GGGAC	1 cut(s)	1370
BslI	CCNNNNNNNGG	3 cut(s)	235, 278, 867
BsmAI	GTCTC	1 cut(s)	708
BsmFI	GGGAC	1 cut(s)	1370
BsmI	GAATGC	2 cut(s)	267, 1252
BsoBI	CYCGRG	2 cut(s)	233, 981
Bsp1286I	GDGCHC	4 cut(s)	136, 247, 737, 1406
Bsp143I	GATC	6 cut(s)	238, 497, 904, 1010, 1193, 1340
BspACI	CCGC	7 cut(s)	129, 138, 140, 204, 771, 790, 937
BspCNI	CTCAG	1 cut(s)	749
BspFNI	CGCG	4 cut(s)	140, 177, 559, 939
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	1 cut(s)	808
BspMAI	CTGCAG	2 cut(s)	760, 1146
BspPI	GGATC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	806
BsrI	ACTGG	2 cut(s)	466, 1076
BssECI	CCNNGG	1 cut(s)	138
BssHII	GCGCGC	1 cut(s)	175
BssMI	GATC	6 cut(s)	238, 497, 904, 1010, 1193, 1340
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	1087, 1367
Bst6I	CTCTTC	1 cut(s)	1210
BstAPI	GCANNNNNTGC	1 cut(s)	1141
BstC8I	GCNNGC	3 cut(s)	177, 999, 1142
BstDEI	CTNAG	2 cut(s)	736, 823
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	910, 1153
BstFNI	CGCG	4 cut(s)	140, 177, 559, 939
BstHHI	GCGC	3 cut(s)	177, 179, 254
BstKTI	GATC	6 cut(s)	241, 500, 907, 1013, 1196, 1343
BstMAI	GTCTC	1 cut(s)	708
BstMBI	GATC	6 cut(s)	238, 497, 904, 1010, 1193, 1340
BstMCI	CGRYCG	1 cut(s)	500
BstMWI	GCNNNNNNNGC	5 cut(s)	174, 251, 770, 796, 1141
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	3 cut(s)	660, 756, 1142
BstSLI	GKGCMC	1 cut(s)	1406
BstUI	CGCG	4 cut(s)	140, 177, 559, 939
BstV1I	GCAGC	6 cut(s)	89, 889, 1096, 1237, 1278, 1295
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	1010
BstYI	RGATCY	1 cut(s)	1010
Bsu36I	CCTNAGG	1 cut(s)	823
BtgI	CCRYGG	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	910, 1153
BtsIMutI	CAGTG	1 cut(s)	1392
Cac8I	GCNNGC	3 cut(s)	177, 999, 1142
CaiI	CAGNNNCTG	2 cut(s)	1141, 1365
CciI	TCATGA	1 cut(s)	601
CfoI	GCGC	3 cut(s)	177, 179, 254
Cfr42I	CCGCGG	1 cut(s)	141
CseI	GACGC	3 cut(s)	121, 200, 548
Csp6I	GTAC	1 cut(s)	657
CviAII	CATG	3 cut(s)	602, 1270, 1333
CviQI	GTAC	1 cut(s)	657
DdeI	CTNAG	2 cut(s)	736, 823
DpnI	GATC	6 cut(s)	240, 499, 906, 1012, 1195, 1342
DpnII	GATC	6 cut(s)	238, 497, 904, 1010, 1193, 1340
DriI	GACNNNNNGTC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	1210
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	1210
Eco32I	GATATC	1 cut(s)	1305
Eco57I	CTGAAG	1 cut(s)	366
Eco81I	CCTNAGG	1 cut(s)	823
Eco88I	CYCGRG	2 cut(s)	233, 981
EcoRII	CCWGG	1 cut(s)	277
EcoRV	GATATC	1 cut(s)	1305
EcoT22I	ATGCAT	1 cut(s)	427
FaeI	CATG	3 cut(s)	605, 1273, 1336
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FaqI	GGGAC	1 cut(s)	1370
FatI	CATG	3 cut(s)	601, 1269, 1332
FauI	CCCGC	2 cut(s)	145, 783
FblI	GTMKAC	1 cut(s)	101
Fnu4HI	GCNGC	7 cut(s)	78, 771, 878, 1110, 1251, 1267, 1284
FokI	GGATG	2 cut(s)	897, 1160
Fsp4HI	GCNGC	7 cut(s)	78, 771, 878, 1110, 1251, 1267, 1284
FspBI	CTAG	2 cut(s)	53, 1188
GlaI	GCGC	3 cut(s)	176, 178, 253
GluI	GCNGC	7 cut(s)	78, 771, 878, 1110, 1251, 1267, 1284
GsuI	CTGGAG	2 cut(s)	42, 173
HgaI	GACGC	3 cut(s)	121, 200, 548
HhaI	GCGC	3 cut(s)	177, 179, 254
Hin1II	CATG	3 cut(s)	605, 1273, 1336
Hin6I	GCGC	3 cut(s)	175, 177, 252
HinP1I	GCGC	3 cut(s)	175, 177, 252
HincII	GTYRAC	2 cut(s)	102, 1065
HindII	GTYRAC	2 cut(s)	102, 1065
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	6 cut(s)	92, 182, 413, 554, 716, 1184
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	3 cut(s)	102, 1065, 1404
Hpy188I	TCNGA	8 cut(s)	222, 421, 497, 739, 1117, 1176, 1198, 1351
Hpy188III	TCNNGA	9 cut(s)	21, 257, 410, 441, 602, 914, 1008, 1243, 1319
Hpy8I	GTNNAC	3 cut(s)	102, 1065, 1404
Hpy99I	CGWCG	6 cut(s)	70, 92, 100, 103, 106, 216
HpyAV	CCTTC	3 cut(s)	272, 540, 1039
HpyCH4III	ACNGT	2 cut(s)	1087, 1367
HpyCH4IV	ACGT	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	5 cut(s)	174, 251, 770, 796, 1141
HpyF3I	CTNAG	2 cut(s)	736, 823
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	3 cut(s)	605, 1273, 1336
HspAI	GCGC	3 cut(s)	175, 177, 252
KspI	CCGCGG	1 cut(s)	141
Kzo9I	GATC	6 cut(s)	238, 497, 904, 1010, 1193, 1340
LmnI	GCTCC	2 cut(s)	20, 139
Lsp1109I	GCAGC	6 cut(s)	89, 889, 1096, 1237, 1278, 1295
LweI	GCATC	8 cut(s)	89, 412, 434, 511, 601, 641, 1121, 1248
MaeI	CTAG	2 cut(s)	53, 1188
MaeII	ACGT	1 cut(s)	104
MalI	GATC	6 cut(s)	240, 499, 906, 1012, 1195, 1342
MboI	GATC	6 cut(s)	238, 497, 904, 1010, 1193, 1340
MboII	GAAGA	5 cut(s)	17, 20, 398, 408, 1197
MfeI	CAATTG	1 cut(s)	506
MflI	RGATCY	1 cut(s)	1010
MhlI	GDGCHC	4 cut(s)	136, 247, 737, 1406
MlyI	GAGTC	2 cut(s)	101, 710
MmeI	TCCRAC	1 cut(s)	200
Mph1103I	ATGCAT	1 cut(s)	427
MseI	TTAA	5 cut(s)	47, 294, 303, 525, 888
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	3 cut(s)	140, 997, 1286
MspR9I	CCNGG	1 cut(s)	279
MunI	CAATTG	1 cut(s)	506
Mva1269I	GAATGC	2 cut(s)	267, 1252
MvaI	CCWGG	1 cut(s)	279
MvnI	CGCG	4 cut(s)	140, 177, 559, 939
MwoI	GCNNNNNNNGC	5 cut(s)	174, 251, 770, 796, 1141
NdeII	GATC	6 cut(s)	238, 497, 904, 1010, 1193, 1340
NlaIII	CATG	3 cut(s)	605, 1273, 1336
NlaIV	GGNNCC	1 cut(s)	808
NsiI	ATGCAT	1 cut(s)	427
PaeR7I	CTCGAG	2 cut(s)	233, 981
PagI	TCATGA	1 cut(s)	601
PauI	GCGCGC	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PctI	GAATGC	2 cut(s)	267, 1252
PfeI	GAWTC	4 cut(s)	182, 413, 554, 1184
PkrI	GCNGC	7 cut(s)	79, 772, 879, 1111, 1252, 1268, 1285
Ple19I	CGATCG	1 cut(s)	500
PleI	GAGTC	2 cut(s)	100, 710
PpsI	GAGTC	2 cut(s)	100, 710
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	808
PspXI	VCTCGAGB	2 cut(s)	233, 981
PstI	CTGCAG	2 cut(s)	760, 1146
PstNI	CAGNNNCTG	2 cut(s)	1141, 1365
PsuI	RGATCY	1 cut(s)	1010
PteI	GCGCGC	1 cut(s)	175
PvuI	CGATCG	1 cut(s)	500
PvuII	CAGCTG	2 cut(s)	997, 1286
RsaI	GTAC	1 cut(s)	658
RsaNI	GTAC	1 cut(s)	657
RseI	CAYNNNNRTG	1 cut(s)	339
SacII	CCGCGG	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	100
SaqAI	TTAA	5 cut(s)	47, 294, 303, 525, 888
SatI	GCNGC	7 cut(s)	78, 771, 878, 1110, 1251, 1267, 1284
Sau3AI	GATC	6 cut(s)	238, 497, 904, 1010, 1193, 1340
SbfI	CCTGCAGG	1 cut(s)	1146
SchI	GAGTC	2 cut(s)	101, 710
ScrFI	CCNGG	1 cut(s)	279
SdaI	CCTGCAGG	1 cut(s)	1146
SduI	GDGCHC	4 cut(s)	136, 247, 737, 1406
SfaNI	GCATC	8 cut(s)	89, 412, 434, 511, 601, 641, 1121, 1248
SfcI	CTRYAG	3 cut(s)	660, 756, 1142
Sfr274I	CTCGAG	2 cut(s)	233, 981
Sfr303I	CCGCGG	1 cut(s)	141
SgrBI	CCGCGG	1 cut(s)	141
SgrDI	CGTCGACG	1 cut(s)	100
SlaI	CTCGAG	2 cut(s)	233, 981
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	2 cut(s)	233, 981
SmoI	CTYRAG	2 cut(s)	233, 981
Sse8387I	CCTGCAGG	1 cut(s)	1146
SsiI	CCGC	7 cut(s)	129, 138, 140, 204, 771, 790, 937
SspI	AATATT	3 cut(s)	437, 453, 709
SspMI	CTAG	2 cut(s)	53, 1188
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	1087, 1367
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	8 cut(s)	101, 214, 234, 258, 428, 668, 982, 1257
TaqII	GACCGA	1 cut(s)	1082
TauI	GCSGC	1 cut(s)	773
TfiI	GAWTC	4 cut(s)	182, 413, 554, 1184
Tru1I	TTAA	5 cut(s)	47, 294, 303, 525, 888
Tru9I	TTAA	5 cut(s)	47, 294, 303, 525, 888
TscAI	CASTG	1 cut(s)	1399
TseI	GCWGC	6 cut(s)	77, 877, 1109, 1250, 1266, 1283
TspDTI	ATGAA	4 cut(s)	590, 942, 1209, 1321
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	1 cut(s)	1399
VneI	GTGCAC	1 cut(s)	1402
XapI	RAATTY	3 cut(s)	617, 743, 932
XhoI	CTCGAG	2 cut(s)	233, 981
XmiI	GTMKAC	1 cut(s)	101
XspI	CTAG	2 cut(s)	53, 1188
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.