Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006267

Physical Location & Seq

Genomic Coordinates Forward (+)

25265109 .. 25270254

Gene Structure 5146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g27010.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGGTTCATCTTCTTCTTCTTATAGTTTTAAGAGCAGTTGGGTGCAAAGGTTCGTCCCTTTCTTCGTTGCGGTCTGGCTTTTCTTTAGCTATGATTGCCATGGAATAATTGGAGCAAATGCAGCCACAGCGCCTGTGAAAGTGAATGGCAATATTTCAAAGGTGGTAGACGCAGTTAATTTCCATATATACTATGGACAGACTTTCAAAGTCATCAAGAATTCCATTGACGGCAAGAGCTACCTTCTCATCCAGAACAATACAAGGATGGCAGCAAGGACAAAATATTGTACCTCGAGGATCAAATCATTTGTTATCCCATTATCAAATTATTCAATCGATGCCGATTATTTTCCAGTTTCCTTTTTCGAGCTCCTGGGATTACTAGGGAGCTTGAAGGGCATTACATCAAACTCTGTGGCTTCTCAATGTGTTTTGAAATTGTATGAAGCTGGAGAAATTGATTTGATTCCCAATGGTGAGCCAGAACAAGTAGCAAAATTTGCAGCACATTTCATTACCAACATTGACCAACCACAGGCTTGCAATTTTGCCTCTTTTGTTCCTTATGGAGAGGATAACCCTTTGCAGAGAGCAGAGTGGATCAAGTTCTTGGGAGTGTTTGCAAACGTTGAGAGCAGAGCAAATCAAGTATATGATGCAGTTACACAGAATTATCAATGCTTGACCAAACTTGCGAAAAACAGGACATCTTTCAAACCAACAGTAGCATGGATGGAGTACGATAATGTTAGGTCTTTTGCAAAGGAAACATACAAATTGAAGTATGTGGAAGACGCATTTGGTGAAAATGTGGATGATTCTATCAACAAGAATACCTACAACATCTCTAGTCCTGACGATTTGGATGCACTGCATGCCATCCTATGTACCGTGGATGTGGTTATTGACGAAACATACACTTGGGATCCAGTTATGTACAATTCATCAACGTTTCTGCAAAACATAAACGTGGAAGATCATTCTTGTTTTGCTTTCCTCTCTAACCAAAGCATTTGGAGATACGATAAAAGAGTTCAGAATTCAACTGCCCTTGACTGGTACAATGGAGCAATCTCCCAGCCTCAACTGGTCTTAGCAGATCTCCTTGAAGTACTGTTCCCTACCGGAAATTATACAACAACATACTTCAGGAATATTGCAAAGGATGAAGGGGTTGTGAACATAACTTCTGAAATGTGTGACAGAGATATCTCCTCTGCAATGGAGCCTACATTACCAGCTTGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

418

Amino Acids

46.88

Weight (kDa)

5.01

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65900 AT1G65900
fragaria_vesca	FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290 FvH4_1g27290
malus_domestica	MD17G1286700.v1.1
prunus_persica	Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1 Prupe.3G014300_v2.0.a1
pyrus_communis	pycom17g27010
rosa_chinensis	RchiOBHm_Chr3g0488721
rosa_laevigata	RLG00000022928
rosa_multiflora	Rmu_sc0000265.1_g000020 Rmu_sc0001208.1_g000077
rosa_roxburghii	Rroxscaffold_6G00393930
rosa_rugosa	Rorug03G0241000 Rorug03G0241100
rosa_samantha	Rh3AG289300 Rh3BG326100 Rh3CG323800 Rh3DG322100
rosa_wichuraiana	Rw3G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	1 cut(s)	71
AclI	AACGTT	2 cut(s)	630, 953
AclWI	GGATC	4 cut(s)	308, 611, 923, 936
AcsI	RAATTY	3 cut(s)	220, 500, 1042
AcuI	CTGAAG	1 cut(s)	1135
AfaI	GTAC	6 cut(s)	292, 743, 892, 941, 1064, 1116
AfiI	CCNNNNNNNGG	2 cut(s)	538, 1059
AgsI	TTSAA	9 cut(s)	159, 208, 336, 397, 439, 718, 784, 1047, 1112
AjnI	CCWGG	1 cut(s)	375
AjuI	GAANNNNNNNTTGG	2 cut(s)	786, 818
AluBI	AGCT	6 cut(s)	90, 240, 373, 393, 452, 1244
AluI	AGCT	6 cut(s)	90, 240, 373, 393, 452, 1244
Alw21I	GWGCWC	1 cut(s)	375
AlwI	GGATC	4 cut(s)	308, 611, 923, 936
AlwNI	CAGNNNCTG	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	295
ApeKI	GCWGC	3 cut(s)	122, 272, 506
ApoI	RAATTY	3 cut(s)	220, 500, 1042
AspLEI	GCGC	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	491, 818
AvaI	CYCGRG	1 cut(s)	295
BamHI	GGATCC	1 cut(s)	928
BanII	GRGCYC	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	801
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	134, 284, 518
BccI	CCATC	3 cut(s)	262, 730, 890
BceAI	ACGGC	1 cut(s)	247
BcgI	CGANNNNNNTGC	2 cut(s)	851, 885
BciT130I	CCWGG	1 cut(s)	377
BfaI	CTAG	2 cut(s)	386, 852
BfoI	RGCGCY	1 cut(s)	134
BglII	AGATCT	1 cut(s)	1102
BisI	GCNGC	3 cut(s)	123, 273, 507
BlsI	GCNGC	3 cut(s)	124, 274, 508
BmcAI	AGTACT	1 cut(s)	1116
Bme1390I	CCNGG	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	930, 1230
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	3 cut(s)	331, 649, 859
BpiI	GAAGAC	1 cut(s)	801
BpmI	CTGGAG	1 cut(s)	474
Bsa29I	ATCGAT	1 cut(s)	339
BsaJI	CCNNGG	3 cut(s)	100, 376, 894
BsaWI	WCCGGW	1 cut(s)	1127
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 1059
Bse1I	ACTGG	4 cut(s)	356, 932, 1064, 1095
Bse3DI	GCAATG	1 cut(s)	1230
BseBI	CCWGG	1 cut(s)	377
BseCI	ATCGAT	1 cut(s)	339
BseDI	CCNNGG	3 cut(s)	100, 376, 894
BseGI	GGATG	8 cut(s)	249, 273, 741, 823, 874, 882, 904, 1174
BseLI	CCNNNNNNNGG	2 cut(s)	538, 1059
BseMI	GCAATG	1 cut(s)	1230
BseNI	ACTGG	4 cut(s)	356, 932, 1064, 1095
BseRI	GAGGAG	1 cut(s)	1207
BseXI	GCAGC	3 cut(s)	134, 284, 518
BseYI	CCCAGC	1 cut(s)	1080
BshVI	ATCGAT	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	1128
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	538, 1059
BsmFI	GGGAC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp1407I	TGTACA	1 cut(s)	939
Bsp143I	GATC	5 cut(s)	300, 603, 928, 979, 1102
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	1 cut(s)	71
BspDI	ATCGAT	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	930, 1230
BspPI	GGATC	4 cut(s)	308, 611, 923, 936
BsrDI	GCAATG	1 cut(s)	1230
BsrGI	TGTACA	1 cut(s)	939
BsrI	ACTGG	4 cut(s)	356, 932, 1064, 1095
BssECI	CCNNGG	3 cut(s)	100, 376, 894
BssMI	GATC	5 cut(s)	300, 603, 928, 979, 1102
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	3 cut(s)	727, 895, 1119
BstAPI	GCANNNNNTGC	2 cut(s)	503, 878
BstAUI	TGTACA	1 cut(s)	939
BstC8I	GCNNGC	2 cut(s)	544, 879
BstDEI	CTNAG	1 cut(s)	1096
BstDSI	CCRYGG	2 cut(s)	100, 894
BstF5I	GGATG	8 cut(s)	249, 273, 741, 823, 874, 882, 904, 1174
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	5 cut(s)	303, 606, 931, 982, 1105
BstMBI	GATC	5 cut(s)	300, 603, 928, 979, 1102
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 122, 128, 399, 503, 878
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	881
BstSCI	CCNGG	1 cut(s)	375
BstV1I	GCAGC	3 cut(s)	134, 284, 518
BstV2I	GAAGAC	1 cut(s)	801
BstX2I	RGATCY	2 cut(s)	928, 1102
BstYI	RGATCY	2 cut(s)	928, 1102
Bsu15I	ATCGAT	1 cut(s)	339
BsuTUI	ATCGAT	1 cut(s)	339
BtgI	CCRYGG	2 cut(s)	100, 894
BtsCI	GGATG	8 cut(s)	249, 273, 741, 823, 874, 882, 904, 1174
BtsI	GCAGTG	1 cut(s)	872
BtsIMutI	CAGTG	1 cut(s)	872
Cac8I	GCNNGC	2 cut(s)	544, 879
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	1 cut(s)	133
ClaI	ATCGAT	1 cut(s)	339
CseI	GACGC	2 cut(s)	179, 806
Csp6I	GTAC	6 cut(s)	291, 742, 891, 940, 1063, 1115
CspCI	CAANNNNNGTGG	2 cut(s)	399, 434
CviAII	CATG	4 cut(s)	101, 732, 878, 1251
CviQI	GTAC	6 cut(s)	291, 742, 891, 940, 1063, 1115
DdeI	CTNAG	1 cut(s)	1096
DpnI	GATC	5 cut(s)	302, 605, 930, 981, 1104
DpnII	GATC	5 cut(s)	300, 603, 928, 979, 1102
Ecl136II	GAGCTC	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	375
Eco32I	GATATC	1 cut(s)	1213
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	1135
Eco88I	CYCGRG	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	373
EcoRI	GAATTC	2 cut(s)	220, 1042
EcoRII	CCWGG	1 cut(s)	375
EcoRV	GATATC	1 cut(s)	1213
EcoT14I	CCWWGG	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	4 cut(s)	104, 735, 881, 1254
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	4 cut(s)	100, 731, 877, 1250
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	3 cut(s)	123, 273, 507
FokI	GGATG	8 cut(s)	236, 280, 748, 830, 869, 881, 911, 1181
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	3 cut(s)	123, 273, 507
FspBI	CTAG	2 cut(s)	386, 852
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	3 cut(s)	123, 273, 507
GsaI	CCCAGC	1 cut(s)	1084
GsuI	CTGGAG	1 cut(s)	474
HaeII	RGCGCY	1 cut(s)	134
HapII	CCGG	1 cut(s)	1128
HgaI	GACGC	2 cut(s)	179, 806
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	4 cut(s)	104, 735, 881, 1254
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	2 cut(s)	469, 821
HpaII	CCGG	1 cut(s)	1128
HphI	GGTGA	2 cut(s)	491, 818
Hpy166II	GTNNAC	2 cut(s)	169, 1183
Hpy188I	TCNGA	2 cut(s)	1041, 1195
Hpy188III	TCNNGA	4 cut(s)	217, 253, 857, 1153
Hpy8I	GTNNAC	2 cut(s)	169, 1183
HpyAV	CCTTC	3 cut(s)	254, 391, 1166
HpyCH4III	ACNGT	3 cut(s)	727, 895, 1119
HpyCH4IV	ACGT	3 cut(s)	630, 953, 972
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 122, 128, 399, 503, 878
HpyF3I	CTNAG	1 cut(s)	1096
HpySE526I	ACGT	3 cut(s)	630, 953, 972
Hsp92II	CATG	4 cut(s)	104, 735, 881, 1254
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	5 cut(s)	300, 603, 928, 979, 1102
LmnI	GCTCC	5 cut(s)	113, 378, 390, 1070, 1228
Lsp1109I	GCAGC	3 cut(s)	134, 284, 518
LweI	GCATC	3 cut(s)	331, 649, 859
MaeI	CTAG	2 cut(s)	386, 852
MaeII	ACGT	3 cut(s)	630, 953, 972
MaeIII	GTNAC	2 cut(s)	664, 1202
MalI	GATC	5 cut(s)	302, 605, 930, 981, 1104
MboI	GATC	5 cut(s)	300, 603, 928, 979, 1102
MboII	GAAGA	6 cut(s)	3, 6, 9, 55, 806, 989
MflI	RGATCY	2 cut(s)	928, 1102
MhlI	GDGCHC	1 cut(s)	375
MnlI	CCTC	7 cut(s)	291, 304, 565, 568, 1010, 1095, 1228
MseI	TTAA	2 cut(s)	30, 177
MslI	CAYNNNNRTG	1 cut(s)	971
MspI	CCGG	1 cut(s)	1128
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	6 cut(s)	96, 122, 128, 399, 503, 878
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	5 cut(s)	300, 603, 928, 979, 1102
NlaIII	CATG	4 cut(s)	104, 735, 881, 1254
NlaIV	GGNNCC	2 cut(s)	930, 1230
NmuCI	GTSAC	1 cut(s)	1202
NspI	RCATGY	1 cut(s)	881
PaeI	GCATGC	1 cut(s)	881
PaeR7I	CTCGAG	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	469, 821
PkrI	GCNGC	3 cut(s)	124, 274, 508
Psp124BI	GAGCTC	1 cut(s)	375
Psp1406I	AACGTT	2 cut(s)	630, 953
Psp6I	CCWGG	1 cut(s)	375
PspFI	CCCAGC	1 cut(s)	1080
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	2 cut(s)	930, 1230
PspXI	VCTCGAGB	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	2 cut(s)	928, 1102
RsaI	GTAC	6 cut(s)	292, 743, 892, 941, 1064, 1116
RsaNI	GTAC	6 cut(s)	291, 742, 891, 940, 1063, 1115
RseI	CAYNNNNRTG	1 cut(s)	971
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	30, 177
SatI	GCNGC	3 cut(s)	123, 273, 507
Sau3AI	GATC	5 cut(s)	300, 603, 928, 979, 1102
ScaI	AGTACT	1 cut(s)	1116
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	3 cut(s)	331, 649, 859
Sfr274I	CTCGAG	1 cut(s)	295
SlaI	CTCGAG	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	971
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
SphI	GCATGC	1 cut(s)	881
SsiI	CCGC	1 cut(s)	71
SspI	AATATT	3 cut(s)	154, 287, 1159
SspMI	CTAG	2 cut(s)	386, 852
SstI	GAGCTC	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	3 cut(s)	727, 895, 1119
TaiI	ACGT	3 cut(s)	633, 956, 975
TaqI	TCGA	3 cut(s)	296, 339, 369
TatI	WGTACW	2 cut(s)	939, 1114
TfiI	GAWTC	2 cut(s)	469, 821
Tru1I	TTAA	2 cut(s)	30, 177
Tru9I	TTAA	2 cut(s)	30, 177
TscAI	CASTG	1 cut(s)	879
TseFI	GTSAC	1 cut(s)	1202
TseI	GCWGC	3 cut(s)	122, 272, 506
Tsp45I	GTSAC	1 cut(s)	1202
TspDTI	ATGAA	4 cut(s)	462, 505, 936, 1185
TspRI	CASTG	1 cut(s)	879
XapI	RAATTY	3 cut(s)	220, 500, 1042
XceI	RCATGY	1 cut(s)	881
XcmI	CCANNNNNNNNNTGG	3 cut(s)	107, 191, 729
XhoI	CTCGAG	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	2 cut(s)	386, 852
ZrmI	AGTACT	1 cut(s)	1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.