Ring finger domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G24580 AT1G67856 |
| fragaria_vesca | FvH4_4g25700 |
| malus_domestica | MD08G1159300.v1.1 MD13G1099900.v1.1 MD16G1100900.v1.1 |
| prunus_persica | Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1 |
| pyrus_communis | pycom13g08730 pycom16g08540 |
| rosa_chinensis | RchiOBHm_Chr4g0433131 |
| rosa_laevigata | RLG00000006782 |
| rosa_multiflora | Rmu_co8009482.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00374610 |
| rosa_rugosa | Rorug04G0265700 |
| rosa_samantha | Rh4BG328000 Rh4CG343400 Rh4DG323200 |
| rosa_wichuraiana | Rw4G027770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 384 |
| AcuI | CTGAAG | 1 cut(s) | 51 |
| AgsI | TTSAA | 2 cut(s) | 174, 209 |
| AluBI | AGCT | 3 cut(s) | 120, 251, 338 |
| AluI | AGCT | 3 cut(s) | 120, 251, 338 |
| Alw21I | GWGCWC | 1 cut(s) | 122 |
| Alw26I | GTCTC | 2 cut(s) | 81, 119 |
| AlwI | GGATC | 1 cut(s) | 384 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 29 |
| AsuHPI | GGTGA | 2 cut(s) | 127, 310 |
| BanII | GRGCYC | 1 cut(s) | 122 |
| Bbv12I | GWGCWC | 1 cut(s) | 122 |
| BccI | CCATC | 1 cut(s) | 401 |
| BcoDI | GTCTC | 2 cut(s) | 81, 119 |
| BfaI | CTAG | 2 cut(s) | 50, 80 |
| BfmI | CTRYAG | 1 cut(s) | 385 |
| BglII | AGATCT | 1 cut(s) | 98 |
| BmsI | GCATC | 1 cut(s) | 30 |
| BsaI | GGTCTC | 1 cut(s) | 119 |
| BseGI | GGATG | 1 cut(s) | 393 |
| BseMII | CTCAG | 2 cut(s) | 114, 348 |
| BseRI | GAGGAG | 1 cut(s) | 302 |
| BsiHKAI | GWGCWC | 1 cut(s) | 122 |
| BsmAI | GTCTC | 2 cut(s) | 81, 119 |
| Bso31I | GGTCTC | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 122 |
| Bsp143I | GATC | 3 cut(s) | 98, 160, 389 |
| BspCNI | CTCAG | 2 cut(s) | 115, 347 |
| BspHI | TCATGA | 1 cut(s) | 163 |
| BspMAI | CTGCAG | 1 cut(s) | 389 |
| BspPI | GGATC | 1 cut(s) | 384 |
| BspTNI | GGTCTC | 1 cut(s) | 119 |
| BssMI | GATC | 3 cut(s) | 98, 160, 389 |
| Bst4CI | ACNGT | 2 cut(s) | 64, 260 |
| Bst6I | CTCTTC | 1 cut(s) | 288 |
| BstC8I | GCNNGC | 1 cut(s) | 320 |
| BstDEI | CTNAG | 2 cut(s) | 123, 334 |
| BstF5I | GGATG | 1 cut(s) | 393 |
| BstKTI | GATC | 3 cut(s) | 101, 163, 392 |
| BstMAI | GTCTC | 2 cut(s) | 81, 119 |
| BstMBI | GATC | 3 cut(s) | 98, 160, 389 |
| BstSFI | CTRYAG | 1 cut(s) | 385 |
| BstX2I | RGATCY | 2 cut(s) | 98, 389 |
| BstYI | RGATCY | 2 cut(s) | 98, 389 |
| BtsCI | GGATG | 1 cut(s) | 393 |
| BtsIMutI | CAGTG | 1 cut(s) | 78 |
| Cac8I | GCNNGC | 1 cut(s) | 320 |
| CaiI | CAGNNNCTG | 1 cut(s) | 29 |
| CciI | TCATGA | 1 cut(s) | 163 |
| CseI | GACGC | 1 cut(s) | 15 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 356, 391 |
| CviAII | CATG | 3 cut(s) | 91, 112, 164 |
| CviJI | RGCY | 3 cut(s) | 120, 251, 338 |
| CviKI_1 | RGCY | 3 cut(s) | 120, 251, 338 |
| DdeI | CTNAG | 2 cut(s) | 123, 334 |
| DpnI | GATC | 3 cut(s) | 100, 162, 391 |
| DpnII | GATC | 3 cut(s) | 98, 160, 389 |
| DraI | TTTAAA | 1 cut(s) | 283 |
| Eam1104I | CTCTTC | 1 cut(s) | 288 |
| EarI | CTCTTC | 1 cut(s) | 288 |
| Ecl136II | GAGCTC | 1 cut(s) | 120 |
| Eco24I | GRGCYC | 1 cut(s) | 122 |
| Eco31I | GGTCTC | 1 cut(s) | 119 |
| Eco53kI | GAGCTC | 1 cut(s) | 120 |
| Eco57I | CTGAAG | 1 cut(s) | 51 |
| EcoICRI | GAGCTC | 1 cut(s) | 120 |
| EcoT38I | GRGCYC | 1 cut(s) | 122 |
| FaeI | CATG | 3 cut(s) | 94, 115, 167 |
| FaiI | YATR | 4 cut(s) | 92, 113, 165, 254 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 311, 343 |
| FatI | CATG | 3 cut(s) | 90, 111, 163 |
| FokI | GGATG | 1 cut(s) | 380 |
| FriOI | GRGCYC | 1 cut(s) | 122 |
| FspBI | CTAG | 2 cut(s) | 50, 80 |
| HgaI | GACGC | 1 cut(s) | 15 |
| Hin1II | CATG | 3 cut(s) | 94, 115, 167 |
| HincII | GTYRAC | 1 cut(s) | 109 |
| HindII | GTYRAC | 1 cut(s) | 109 |
| HinfI | GANTC | 3 cut(s) | 170, 189, 209 |
| HphI | GGTGA | 2 cut(s) | 127, 310 |
| Hpy166II | GTNNAC | 1 cut(s) | 109 |
| Hpy188I | TCNGA | 2 cut(s) | 31, 124 |
| Hpy188III | TCNNGA | 1 cut(s) | 164 |
| Hpy8I | GTNNAC | 1 cut(s) | 109 |
| HpyAV | CCTTC | 1 cut(s) | 26 |
| HpyCH4III | ACNGT | 2 cut(s) | 64, 260 |
| HpyCH4V | TGCA | 2 cut(s) | 318, 387 |
| HpyF3I | CTNAG | 2 cut(s) | 123, 334 |
| Hsp92II | CATG | 3 cut(s) | 94, 115, 167 |
| Kzo9I | GATC | 3 cut(s) | 98, 160, 389 |
| LpnPI | CCDG | 2 cut(s) | 220, 328 |
| LweI | GCATC | 1 cut(s) | 30 |
| MaeI | CTAG | 2 cut(s) | 50, 80 |
| MalI | GATC | 3 cut(s) | 100, 162, 391 |
| MboI | GATC | 3 cut(s) | 98, 160, 389 |
| MboII | GAAGA | 4 cut(s) | 192, 195, 198, 305 |
| MflI | RGATCY | 2 cut(s) | 98, 389 |
| MhlI | GDGCHC | 1 cut(s) | 122 |
| MnlI | CCTC | 8 cut(s) | 127, 142, 160, 221, 280, 283, 289, 390 |
| MseI | TTAA | 1 cut(s) | 282 |
| NdeII | GATC | 3 cut(s) | 98, 160, 389 |
| NlaIII | CATG | 3 cut(s) | 94, 115, 167 |
| PagI | TCATGA | 1 cut(s) | 163 |
| PfeI | GAWTC | 3 cut(s) | 170, 189, 209 |
| PflFI | GACNNNGTC | 1 cut(s) | 25 |
| Psp124BI | GAGCTC | 1 cut(s) | 122 |
| PstI | CTGCAG | 1 cut(s) | 389 |
| PstNI | CAGNNNCTG | 1 cut(s) | 29 |
| PsuI | RGATCY | 2 cut(s) | 98, 389 |
| PsyI | GACNNNGTC | 1 cut(s) | 25 |
| SacI | GAGCTC | 1 cut(s) | 122 |
| SaqAI | TTAA | 1 cut(s) | 282 |
| Sau3AI | GATC | 3 cut(s) | 98, 160, 389 |
| SduI | GDGCHC | 1 cut(s) | 122 |
| SetI | ASST | 4 cut(s) | 122, 253, 300, 340 |
| SfaNI | GCATC | 1 cut(s) | 30 |
| SfcI | CTRYAG | 1 cut(s) | 385 |
| SspMI | CTAG | 2 cut(s) | 50, 80 |
| SstI | GAGCTC | 1 cut(s) | 122 |
| TaaI | ACNGT | 2 cut(s) | 64, 260 |
| TfiI | GAWTC | 3 cut(s) | 170, 189, 209 |
| Tru1I | TTAA | 1 cut(s) | 282 |
| Tru9I | TTAA | 1 cut(s) | 282 |
| TscAI | CASTG | 1 cut(s) | 78 |
| TspDTI | ATGAA | 1 cut(s) | 71 |
| TspRI | CASTG | 1 cut(s) | 78 |
| Tth111I | GACNNNGTC | 1 cut(s) | 25 |
| XspI | CTAG | 2 cut(s) | 50, 80 |