Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011091

Physical Location & Seq

Genomic Coordinates Forward (+)

7069404 .. 7069790

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1099900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGGCTCTCGAATTTCCCAAGTGCAGCAGAAGGCGTGCTGCCATTGCTAGTAATGAACACAGTTTTTTCCGTGGCTCTGCTAAAAAACATGGCAAGATCTGTGCTTCAAGTGATGCGTGCCAATATCAATTCCCACACTTTCGACGAGAACTCAGATGGGTGTCCTGAGGAAATTTCTAGAGAGAGAAGAATCTCCATAACACAGTTTAAATCTTTCTGCAGAAACGGGGGAAAAACACAGTGTTGTGTCTGTCTCTGTGGGTTCGAAGCAGAGCAAGAAGTGAGTGAGTTGTCCTGCAAGCACTTCTTCCACAAAGGTTGTCTGGAAAAGTGGTTCGACCACAACCACCGTACAACTTGCCCTCTTTGCCGCTCCTTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

129

Amino Acids

14.47

Weight (kDa)

6.93

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	73 - 125	6.7e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	81 - 125	7.7e-13	Ring finger domain
zf-RING_11	PF17123	81 - 109	2.7e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24580 AT1G67856
fragaria_vesca	FvH4_4g25700
malus_domestica	MD08G1159300.v1.1 MD13G1099900.v1.1 MD16G1100900.v1.1
prunus_persica	Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1
pyrus_communis	pycom13g08730 pycom16g08540
rosa_chinensis	RchiOBHm_Chr4g0433131
rosa_laevigata	RLG00000006782
rosa_multiflora	Rmu_co8009482.1_g000001
rosa_roxburghii	Rroxscaffold_5G00374610
rosa_rugosa	Rorug04G0265700
rosa_samantha	Rh4BG328000 Rh4CG343400 Rh4DG323200
rosa_wichuraiana	Rw4G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	375
AciI	CCGC	1 cut(s)	373
AcsI	RAATTY	2 cut(s)	13, 174
AfaI	GTAC	1 cut(s)	355
AgsI	TTSAA	1 cut(s)	110
AloI	GAACNNNNNNTCC	2 cut(s)	320, 352
Alw26I	GTCTC	1 cut(s)	260
ApeKI	GCWGC	2 cut(s)	26, 40
ApoI	RAATTY	2 cut(s)	13, 174
AsuII	TTCGAA	1 cut(s)	267
AxyI	CCTNAGG	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	27, 38
BccI	CCATC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	2 cut(s)	50, 180
BfmI	CTRYAG	1 cut(s)	220
BglII	AGATCT	1 cut(s)	98
BisI	GCNGC	3 cut(s)	27, 41, 373
BlsI	GCNGC	3 cut(s)	28, 42, 374
BmsI	GCATC	1 cut(s)	105
Bpu14I	TTCGAA	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	72
Bse21I	CCTNAGG	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	2 cut(s)	159, 168
BseXI	GCAGC	2 cut(s)	27, 38
BsgI	GTGCAG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	98
BspACI	CCGC	1 cut(s)	373
BspCNI	CTCAG	2 cut(s)	160, 167
BspMAI	CTGCAG	1 cut(s)	224
BspT104I	TTCGAA	1 cut(s)	267
BsrBI	CCGCTC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	98
Bst4CI	ACNGT	4 cut(s)	64, 207, 243, 353
BstBI	TTCGAA	1 cut(s)	267
BstC8I	GCNNGC	3 cut(s)	38, 120, 302
BstDEI	CTNAG	2 cut(s)	154, 168
BstDSI	CCRYGG	1 cut(s)	72
BstKTI	GATC	1 cut(s)	101
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 369
BstSFI	CTRYAG	1 cut(s)	220
BstV1I	GCAGC	2 cut(s)	27, 38
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
Bsu36I	CCTNAGG	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	3 cut(s)	38, 120, 302
Csp6I	GTAC	1 cut(s)	354
CspCI	CAANNNNNGTGG	2 cut(s)	302, 337
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	2 cut(s)	7, 77
CviKI_1	RGCY	2 cut(s)	7, 77
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	2 cut(s)	154, 168
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
DraI	TTTAAA	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	9
Eco81I	CCTNAGG	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	1 cut(s)	94
FaiI	YATR	2 cut(s)	92, 200
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	3 cut(s)	27, 41, 373
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	27, 41, 373
FspBI	CTAG	2 cut(s)	50, 180
GluI	GCNGC	3 cut(s)	27, 41, 373
Hin1II	CATG	1 cut(s)	94
HinfI	GANTC	1 cut(s)	192
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	4 cut(s)	10, 167, 180, 326
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	4 cut(s)	64, 207, 243, 353
HpyCH4V	TGCA	3 cut(s)	26, 222, 300
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 369
HpyF3I	CTNAG	2 cut(s)	154, 168
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	380
LpnPI	CCDG	3 cut(s)	180, 310, 311
Lsp1109I	GCAGC	2 cut(s)	27, 38
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	2 cut(s)	50, 180
MalI	GATC	1 cut(s)	100
MbiI	CCGCTC	1 cut(s)	375
MboI	GATC	1 cut(s)	98
MboII	GAAGA	2 cut(s)	201, 301
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	3 cut(s)	13, 130, 174
MnlI	CCTC	2 cut(s)	163, 375
MseI	TTAA	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	46, 369
NdeII	GATC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	94
NspV	TTCGAA	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	192
PkrI	GCNGC	3 cut(s)	28, 42, 374
PstI	CTGCAG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	98
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	3 cut(s)	27, 41, 373
Sau3AI	GATC	1 cut(s)	98
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	1 cut(s)	322
SfaNI	GCATC	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	220
SfuI	TTCGAA	1 cut(s)	267
Sse9I	AATT	3 cut(s)	13, 130, 174
SsiI	CCGC	1 cut(s)	373
SspMI	CTAG	2 cut(s)	50, 180
TaaI	ACNGT	4 cut(s)	64, 207, 243, 353
TaqI	TCGA	4 cut(s)	11, 144, 267, 339
TasI	AATT	3 cut(s)	13, 130, 174
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	248
TseI	GCWGC	2 cut(s)	26, 40
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	248
XapI	RAATTY	2 cut(s)	13, 174
XbaI	TCTAGA	1 cut(s)	179
XspI	CTAG	2 cut(s)	50, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.