Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011091

Physical Location & Seq

Genomic Coordinates Forward (+)

5777654 .. 5778555

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAGCTGGCTTTGCGTGCTACCGCCATATTATTTCAGCTCCTCCTCCGGGAATCAAGAAACTTCCAGTTCTCACACACACACACAAGAACTGAAAGGTCTCCAAATCTGCCACGGCGCACAAGACACCACCACCTTATTGGCTCTCACAGAACCTCCCGCCGACTCGTTGCTACGTCAAATTTACCCTTTTTGTGCCAGTGAAAATGTCAGTTCTCTCTTCCCCTTGCTGTTTTCACCCTTGTATATCAACCAAGTCACTGTCTCTCCCAAAACCCTACACGTGTCGCCACGTTTGCATCCGTGCCCATGGTTAAAACCATTCCCAGCTTTTAGTTTTTGGCTTTTGGCTTCTGGCTTCTGTGTTCTCTCTTCCTCTCTTAAGAAAATAGCAGAAGCACTGTCTCAAATGGGGCTCTCGAATTTCCCAAGTGCAGCAGAGGGCGTGCTGCCATTGCTAGTAATGAACACAGTTTTTTCCGTGGCTCTGCTAAAAAACATGGCAAGATCTGTGCTTCAAGTGATGCGTGCCAATATCAATTCCCACACTTTCGACGAGAACTCAGATGGGTGTCCTGAGGAAATTTCTAGAGAGAGAAGAATCTCCATAACACAGTTCAAATCTTTCTGCAGAAACGGGGGAAAAACACAGTGCTGTGTCTGTCTCTGTGGGTTCGAAGCAGAGCAAGAAGTGAGTGAGTTGTCCTGCAAGCACTTCTTCCACAAAGGTTGTCTGGAAAAGTGGTTCGACCACAACCACCGTACAACTTGCCCTCTTTGCCGCTCCATTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

265

Amino Acids

29.45

Weight (kDa)

7.09

Isoelectric Point (pI)

53.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24580 AT1G67856
fragaria_vesca	FvH4_4g25700
malus_domestica	MD08G1159300.v1.1 MD13G1099900.v1.1 MD16G1100900.v1.1
prunus_persica	Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1
pyrus_communis	pycom13g08730 pycom16g08540
rosa_chinensis	RchiOBHm_Chr4g0433131
rosa_laevigata	RLG00000006782
rosa_multiflora	Rmu_co8009482.1_g000001
rosa_roxburghii	Rroxscaffold_5G00374610
rosa_rugosa	Rorug04G0265700
rosa_samantha	Rh4BG328000 Rh4CG343400 Rh4DG323200
rosa_wichuraiana	Rw4G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	783
AciI	CCGC	3 cut(s)	23, 159, 781
AcsI	RAATTY	3 cut(s)	180, 421, 582
AcvI	CACGTG	1 cut(s)	283
AfaI	GTAC	1 cut(s)	763
AfiI	CCNNNNNNNGG	1 cut(s)	48
AflII	CTTAAG	1 cut(s)	380
AflIII	ACRYGT	2 cut(s)	280, 282
AgsI	TTSAA	2 cut(s)	518, 619
AloI	GAACNNNNNNTCC	2 cut(s)	728, 760
AluBI	AGCT	3 cut(s)	6, 39, 329
AluI	AGCT	3 cut(s)	6, 39, 329
Alw26I	GTCTC	4 cut(s)	104, 268, 408, 668
ApeKI	GCWGC	2 cut(s)	434, 448
ApoI	RAATTY	3 cut(s)	180, 421, 582
AspLEI	GCGC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	228
AsuII	TTCGAA	1 cut(s)	675
AxyI	CCTNAGG	1 cut(s)	576
BaeGI	GKGCMC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	417
BbrPI	CACGTG	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	435, 446
BccI	CCATC	1 cut(s)	560
BceAI	ACGGC	1 cut(s)	130
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	4 cut(s)	104, 268, 408, 668
BfaI	CTAG	2 cut(s)	458, 588
BfmI	CTRYAG	1 cut(s)	628
BfrI	CTTAAG	1 cut(s)	380
BglII	AGATCT	1 cut(s)	506
BisI	GCNGC	3 cut(s)	435, 449, 781
BlsI	GCNGC	3 cut(s)	436, 450, 782
Bme1390I	CCNGG	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	49
BmsI	GCATC	2 cut(s)	307, 513
Bpu14I	TTCGAA	1 cut(s)	675
BpuMI	CCSGG	1 cut(s)	49
BsaAI	YACGTR	1 cut(s)	283
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	3 cut(s)	112, 308, 480
BsaXI	ACNNNNNCTCC	4 cut(s)	139, 169, 250, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	66, 198
Bse21I	CCTNAGG	1 cut(s)	576
Bse3DI	GCAATG	1 cut(s)	452
BseDI	CCNNGG	3 cut(s)	112, 308, 480
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	2 cut(s)	567, 576
BseNI	ACTGG	2 cut(s)	66, 198
BseRI	GAGGAG	2 cut(s)	31, 34
BseSI	GKGCMC	1 cut(s)	308
BseXI	GCAGC	2 cut(s)	435, 446
BseYI	CCCAGC	1 cut(s)	325
BsgI	GTGCAG	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	4 cut(s)	104, 268, 408, 668
Bso31I	GGTCTC	1 cut(s)	104
Bsp119I	TTCGAA	1 cut(s)	675
Bsp1286I	GDGCHC	2 cut(s)	308, 417
Bsp143I	GATC	1 cut(s)	506
Bsp19I	CCATGG	1 cut(s)	308
BspACI	CCGC	3 cut(s)	23, 159, 781
BspCNI	CTCAG	2 cut(s)	568, 575
BspMAI	CTGCAG	1 cut(s)	632
BspT104I	TTCGAA	1 cut(s)	675
BspTI	CTTAAG	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	104
BsrBI	CCGCTC	1 cut(s)	783
BsrDI	GCAATG	1 cut(s)	452
BsrI	ACTGG	2 cut(s)	66, 198
BssECI	CCNNGG	3 cut(s)	112, 308, 480
BssMI	GATC	1 cut(s)	506
BssT1I	CCWWGG	1 cut(s)	308
Bst4CI	ACNGT	6 cut(s)	262, 402, 472, 615, 651, 761
Bst6I	CTCTTC	2 cut(s)	224, 376
BstAFI	CTTAAG	1 cut(s)	380
BstBAI	YACGTR	1 cut(s)	283
BstBI	TTCGAA	1 cut(s)	675
BstC8I	GCNNGC	5 cut(s)	8, 17, 446, 528, 710
BstDEI	CTNAG	2 cut(s)	562, 576
BstDSI	CCRYGG	3 cut(s)	112, 308, 480
BstF5I	GGATG	1 cut(s)	298
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	1 cut(s)	509
BstMAI	GTCTC	4 cut(s)	104, 268, 408, 668
BstMBI	GATC	1 cut(s)	506
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 16, 295, 454, 777
BstSCI	CCNGG	1 cut(s)	47
BstSFI	CTRYAG	1 cut(s)	628
BstSLI	GKGCMC	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	435, 446
BstX2I	RGATCY	1 cut(s)	506
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	506
Bsu36I	CCTNAGG	1 cut(s)	576
BtgI	CCRYGG	3 cut(s)	112, 308, 480
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	4 cut(s)	205, 258, 398, 656
Cac8I	GCNNGC	5 cut(s)	8, 17, 446, 528, 710
CfoI	GCGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	762
CspCI	CAANNNNNGTGG	2 cut(s)	710, 745
CviAII	CATG	2 cut(s)	309, 499
CviQI	GTAC	1 cut(s)	762
DdeI	CTNAG	2 cut(s)	562, 576
DpnI	GATC	1 cut(s)	508
DpnII	GATC	1 cut(s)	506
Eam1104I	CTCTTC	2 cut(s)	224, 376
EarI	CTCTTC	2 cut(s)	224, 376
Eco130I	CCWWGG	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	104
Eco72I	CACGTG	1 cut(s)	283
Eco81I	CCTNAGG	1 cut(s)	576
EcoT14I	CCWWGG	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	2 cut(s)	312, 502
FaiI	YATR	5 cut(s)	28, 246, 310, 500, 608
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FatI	CATG	2 cut(s)	308, 498
FauI	CCCGC	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	435, 449, 781
FokI	GGATG	1 cut(s)	285
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	3 cut(s)	435, 449, 781
FspBI	CTAG	2 cut(s)	458, 588
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	3 cut(s)	435, 449, 781
GsaI	CCCAGC	1 cut(s)	329
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	312, 502
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	3 cut(s)	52, 164, 600
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	228
Hpy188I	TCNGA	1 cut(s)	565
Hpy188III	TCNNGA	5 cut(s)	56, 418, 575, 588, 734
Hpy99I	CGWCG	1 cut(s)	557
HpyCH4III	ACNGT	6 cut(s)	262, 402, 472, 615, 651, 761
HpyCH4IV	ACGT	3 cut(s)	175, 282, 292
HpyCH4V	TGCA	4 cut(s)	298, 434, 630, 708
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 16, 295, 454, 777
HpyF3I	CTNAG	2 cut(s)	562, 576
HpySE526I	ACGT	3 cut(s)	175, 282, 292
Hsp92II	CATG	2 cut(s)	312, 502
HspAI	GCGC	1 cut(s)	117
Kzo9I	GATC	1 cut(s)	506
LmnI	GCTCC	2 cut(s)	44, 788
LpnPI	CCDG	8 cut(s)	61, 79, 211, 339, 339, 588, 718, 719
Lsp1109I	GCAGC	2 cut(s)	435, 446
LweI	GCATC	2 cut(s)	307, 513
MaeI	CTAG	2 cut(s)	458, 588
MaeII	ACGT	3 cut(s)	175, 282, 292
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	1 cut(s)	508
MbiI	CCGCTC	1 cut(s)	783
MboI	GATC	1 cut(s)	506
MboII	GAAGA	4 cut(s)	211, 363, 609, 709
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	2 cut(s)	308, 417
MluCI	AATT	4 cut(s)	180, 421, 538, 582
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	7 cut(s)	52, 55, 165, 385, 433, 571, 783
MseI	TTAA	2 cut(s)	314, 381
MspCI	CTTAAG	1 cut(s)	380
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	5 cut(s)	12, 16, 295, 454, 777
NciI	CCSGG	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	308
NdeII	GATC	1 cut(s)	506
NlaIII	CATG	2 cut(s)	312, 502
NmuCI	GTSAC	1 cut(s)	256
NspV	TTCGAA	1 cut(s)	675
PfeI	GAWTC	2 cut(s)	52, 600
PfoI	TCCNGGA	1 cut(s)	47
PkrI	GCNGC	3 cut(s)	436, 450, 782
PleI	GAGTC	1 cut(s)	158
PmaCI	CACGTG	1 cut(s)	283
PmlI	CACGTG	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	158
Ppu21I	YACGTR	1 cut(s)	283
PspCI	CACGTG	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	325
PstI	CTGCAG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	506
RsaI	GTAC	1 cut(s)	763
RsaNI	GTAC	1 cut(s)	762
SaqAI	TTAA	2 cut(s)	314, 381
SatI	GCNGC	3 cut(s)	435, 449, 781
Sau3AI	GATC	1 cut(s)	506
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	2 cut(s)	308, 417
SfaNI	GCATC	2 cut(s)	307, 513
SfcI	CTRYAG	1 cut(s)	628
SfuI	TTCGAA	1 cut(s)	675
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	4 cut(s)	180, 421, 538, 582
SsiI	CCGC	3 cut(s)	23, 159, 781
SspMI	CTAG	2 cut(s)	458, 588
StyD4I	CCNGG	1 cut(s)	47
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	6 cut(s)	262, 402, 472, 615, 651, 761
TaiI	ACGT	3 cut(s)	178, 285, 295
TaqI	TCGA	4 cut(s)	419, 552, 675, 747
TasI	AATT	4 cut(s)	180, 421, 538, 582
TauI	GCSGC	1 cut(s)	783
TfiI	GAWTC	2 cut(s)	52, 600
Tru1I	TTAA	2 cut(s)	314, 381
Tru9I	TTAA	2 cut(s)	314, 381
TscAI	CASTG	4 cut(s)	205, 265, 405, 656
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	434, 448
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	479
TspGWI	ACGGA	2 cut(s)	291, 469
TspRI	CASTG	4 cut(s)	205, 265, 405, 656
Vha464I	CTTAAG	1 cut(s)	380
XapI	RAATTY	3 cut(s)	180, 421, 582
XbaI	TCTAGA	1 cut(s)	587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XspI	CTAG	2 cut(s)	458, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.