Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011091

Physical Location & Seq

Genomic Coordinates Reverse (-)

25941338 .. 25942769

Gene Structure 1432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G246100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGGCTCTCAAATTTTCCTAGTGCAGCAGAGGGTGTGCTTCCAGTGCTGGTTATGAACACAGTTTTGTCAGTGGCTCTGTTAAAGAACATGGTAAGATCTGTGCTCCAAGTGATGGGTGCCAATGTGAATTCTCAGAGTTTTGAGGAAAACCCAGATGGGTGTCCAGCAGAGATGATTGCAAGAGAGAGAAGAATCTCCATTTCCCAGTTCAAGTCTCTGTGCCACAGCAACAGCAACAGCAGGCCCAACAATACTTGTGTGGCCAAAACAAACAGTGGGGCAATGGAGTGTTGTGTTTGTCTGTGTGGTTTTGAAGCTGAGCAAGAGGTGAGTGAATTGTCCTGCAAGCATTTCTTCCACAAAGGTTGCTTGGAGAAGTGGTTTGACAACAACCATTCTACTTGCCCTCTCTGCCGCTCTGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

144

Amino Acids

15.66

Weight (kDa)

6.07

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24580 AT1G67856
fragaria_vesca	FvH4_4g25700
malus_domestica	MD08G1159300.v1.1 MD13G1099900.v1.1 MD16G1100900.v1.1
prunus_persica	Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1
pyrus_communis	pycom13g08730 pycom16g08540
rosa_chinensis	RchiOBHm_Chr4g0433131
rosa_laevigata	RLG00000006782
rosa_multiflora	Rmu_co8009482.1_g000001
rosa_roxburghii	Rroxscaffold_5G00374610
rosa_rugosa	Rorug04G0265700
rosa_samantha	Rh4BG328000 Rh4CG343400 Rh4DG323200
rosa_wichuraiana	Rw4G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccB7I	CCANNNNNTGG	1 cut(s)	115
AccBSI	CCGCTC	1 cut(s)	420
AciI	CCGC	1 cut(s)	418
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	2 cut(s)	13, 130
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	214, 317
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	222
AoxI	GGCC	2 cut(s)	245, 264
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	2 cut(s)	13, 130
AspS9I	GGNCC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	343
BalI	TGGCCA	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	2 cut(s)	109, 152
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	21
BglII	AGATCT	1 cut(s)	98
BisI	GCNGC	2 cut(s)	27, 418
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	2 cut(s)	28, 419
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	121
BmrI	ACTGGG	1 cut(s)	202
BmuI	ACTGGG	1 cut(s)	202
Bpu1102I	GCTNAGC	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	44, 208
Bse3DI	GCAATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	2 cut(s)	149, 312
BseNI	ACTGG	2 cut(s)	44, 208
BseXI	GCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	45
BshFI	GGCC	2 cut(s)	247, 266
BshNI	GGYRCC	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	247, 266
Bsp1286I	GDGCHC	2 cut(s)	9, 108
Bsp143I	GATC	1 cut(s)	98
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	1 cut(s)	418
BspANI	GGCC	2 cut(s)	247, 266
BspCNI	CTCAG	2 cut(s)	148, 313
BspLI	GGNNCC	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	44, 208
BssMI	GATC	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	64, 278
BstC8I	GCNNGC	2 cut(s)	245, 350
BstDEI	CTNAG	2 cut(s)	135, 321
BstKTI	GATC	1 cut(s)	101
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 414
BstV1I	GCAGC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	247, 266
BtsIMutI	CAGTG	3 cut(s)	51, 78, 283
Cac8I	GCNNGC	2 cut(s)	245, 350
Cfr13I	GGNCC	1 cut(s)	246
CspCI	CAANNNNNGTGG	2 cut(s)	350, 385
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	5 cut(s)	7, 77, 247, 266, 320
CviKI_1	RGCY	5 cut(s)	7, 77, 247, 266, 320
DdeI	CTNAG	2 cut(s)	135, 321
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
EaeI	YGGCCR	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	9
EcoRI	GAATTC	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	1 cut(s)	94
FaiI	YATR	2 cut(s)	56, 92
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	27, 418
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	27, 418
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	2 cut(s)	27, 418
HaeIII	GGCC	2 cut(s)	247, 266
Hin1II	CATG	1 cut(s)	94
HinfI	GANTC	1 cut(s)	195
HphI	GGTGA	1 cut(s)	343
Hpy188I	TCNGA	1 cut(s)	138
HpyCH4III	ACNGT	2 cut(s)	64, 278
HpyCH4V	TGCA	3 cut(s)	26, 182, 348
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 414
HpyF3I	CTNAG	2 cut(s)	135, 321
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	7 cut(s)	35, 57, 168, 180, 221, 229, 358
Lsp1109I	GCAGC	1 cut(s)	38
MaeI	CTAG	1 cut(s)	21
MalI	GATC	1 cut(s)	100
MbiI	CCGCTC	1 cut(s)	420
MboI	GATC	1 cut(s)	98
MboII	GAAGA	2 cut(s)	204, 349
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	2 cut(s)	9, 108
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	3 cut(s)	13, 130, 338
MluNI	TGGCCA	1 cut(s)	266
MnlI	CCTC	4 cut(s)	25, 139, 322, 420
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	46, 414
NdeII	GATC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	195
PflMI	CCANNNNNTGG	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	28, 419
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	2 cut(s)	27, 418
Sau3AI	GATC	1 cut(s)	98
Sau96I	GGNCC	1 cut(s)	246
SduI	GDGCHC	2 cut(s)	9, 108
SetI	ASST	3 cut(s)	322, 333, 370
Sse9I	AATT	3 cut(s)	13, 130, 338
SsiI	CCGC	1 cut(s)	418
SspMI	CTAG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	64, 278
TasI	AATT	3 cut(s)	13, 130, 338
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TscAI	CASTG	3 cut(s)	51, 78, 283
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	71
TspRI	CASTG	3 cut(s)	51, 78, 283
Van91I	CCANNNNNTGG	1 cut(s)	115
XapI	RAATTY	2 cut(s)	13, 130
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.