Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011091

Physical Location & Seq

Genomic Coordinates Reverse (-)

27395696 .. 27396575

Gene Structure 880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g25700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGGCTGTCGAACTTTCCGGGGACATCGGAGGGGGTGCTACCGGTGCTGGTAATGAACACGGTGCTGTCGGTGGCGCTGCTCAAGAGCATGGTGAGATCCGTGTTCCAAGTAATGAGTGGCGCCAATGTGGCTGCGTCGACTCAGAACCTAGAGGAGGATGGTCCAGATGGGTGTAACACTAGAGAGAGACGAGTCTCGGTGGCGCGGTACAAGTCGATGTGCCACAAGAGAAGCAAGAGAGGAGGAGGGAGCAGATTGGCTATGATGGTGGAGTGTTGTGTGTGTCTGTGTGGTTTTGAAGAGGAGCAGGAGGTTAGTGAATTGTCTTGCAAGCATTTCTTCCACAAAGGTTGCTTGGAGAAGTGGTTTGATAATGACCATACTACTTGCCCTCTCTGCCGCTCTGTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

139

Amino Acids

15.22

Weight (kDa)

7.5

Isoelectric Point (pI)

59.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	88 - 135	3.2e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	92 - 135	4.8e-13	Ring finger domain
zf-RING_11	PF17123	92 - 120	6.9e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24580 AT1G67856
fragaria_vesca	FvH4_4g25700
malus_domestica	MD08G1159300.v1.1 MD13G1099900.v1.1 MD16G1100900.v1.1
prunus_persica	Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1
pyrus_communis	pycom13g08730 pycom16g08540
rosa_chinensis	RchiOBHm_Chr4g0433131
rosa_laevigata	RLG00000006782
rosa_multiflora	Rmu_co8009482.1_g000001
rosa_roxburghii	Rroxscaffold_5G00374610
rosa_rugosa	Rorug04G0265700
rosa_samantha	Rh4BG328000 Rh4CG343400 Rh4DG323200
rosa_wichuraiana	Rw4G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	405
AccI	GTMKAC	1 cut(s)	140
AccII	CGCG	1 cut(s)	208
AciI	CCGC	2 cut(s)	208, 403
AclWI	GGATC	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgeI	ACCGGT	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	302
Alw26I	GTCTC	2 cut(s)	184, 202
AlwI	GGATC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	79, 134
AsiGI	ACCGGT	1 cut(s)	43
AspLEI	GCGC	3 cut(s)	79, 125, 208
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	66, 121
BccI	CCATC	3 cut(s)	155, 164, 262
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	2 cut(s)	184, 202
BfaI	CTAG	2 cut(s)	152, 183
BfoI	RGCGCY	2 cut(s)	80, 126
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	3 cut(s)	80, 135, 403
BlsI	GCNGC	3 cut(s)	81, 136, 404
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	20
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse118I	RCCGGY	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	158
BseRI	GAGGAG	4 cut(s)	170, 258, 261, 320
BseXI	GCAGC	2 cut(s)	66, 121
Bsh1236I	CGCG	1 cut(s)	208
BshNI	GGYRCC	1 cut(s)	122
BshTI	ACCGGT	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	20, 44
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	2 cut(s)	184, 202
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	98
BspACI	CCGC	2 cut(s)	208, 403
BspCNI	CTCAG	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	405
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	1 cut(s)	98
BssNI	GRCGYC	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	1 cut(s)	144
BstENI	CCTNNNNNAGG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	208
BstH2I	RGCGCY	2 cut(s)	80, 126
BstHHI	GCGC	3 cut(s)	79, 125, 208
BstKTI	GATC	1 cut(s)	101
BstMAI	GTCTC	2 cut(s)	184, 202
BstMBI	GATC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 131, 399, 411
BstSCI	CCNGG	1 cut(s)	19
BstUI	CGCG	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	66, 121
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	335
CfoI	GCGC	3 cut(s)	79, 125, 208
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	164
CseI	GACGC	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	211
CspAI	ACCGGT	1 cut(s)	43
CspCI	CAANNNNNGTGG	2 cut(s)	335, 370
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	3 cut(s)	7, 134, 263
CviKI_1	RGCY	3 cut(s)	7, 134, 263
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	144
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	164
EcoNI	CCTNNNNNAGG	1 cut(s)	155
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	1 cut(s)	94
FaiI	YATR	3 cut(s)	92, 266, 384
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	3 cut(s)	80, 135, 403
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	3 cut(s)	80, 135, 403
FspBI	CTAG	2 cut(s)	152, 183
GlaI	GCGC	3 cut(s)	78, 124, 207
GluI	GCNGC	3 cut(s)	80, 135, 403
HaeII	RGCGCY	2 cut(s)	80, 126
HapII	CCGG	2 cut(s)	20, 44
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	3 cut(s)	79, 125, 208
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	3 cut(s)	77, 123, 206
HinP1I	GCGC	3 cut(s)	77, 123, 206
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	2 cut(s)	142, 195
HpaII	CCGG	2 cut(s)	20, 44
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	2 cut(s)	31, 147
Hpy188III	TCNNGA	2 cut(s)	85, 167
Hpy8I	GTNNAC	1 cut(s)	141
Hpy99I	CGWCG	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 131, 399, 411
HpyF3I	CTNAG	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	3 cut(s)	77, 123, 206
KasI	GGCGCC	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	98
LmnI	GCTCC	2 cut(s)	252, 307
LpnPI	CCDG	5 cut(s)	33, 35, 57, 180, 296
Lsp1109I	GCAGC	2 cut(s)	66, 121
MaeI	CTAG	2 cut(s)	152, 183
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	100
MbiI	CCGCTC	1 cut(s)	405
MboI	GATC	1 cut(s)	98
MboII	GAAGA	2 cut(s)	314, 334
MflI	RGATCY	1 cut(s)	98
MluCI	AATT	1 cut(s)	323
Mly113I	GGCGCC	1 cut(s)	123
MlyI	GAGTC	2 cut(s)	136, 204
MnlI	CCTC	9 cut(s)	25, 148, 151, 236, 239, 242, 298, 307, 405
MspI	CCGG	2 cut(s)	20, 44
MspR9I	CCNGG	1 cut(s)	21
MvnI	CGCG	1 cut(s)	208
MwoI	GCNNNNNNNGC	4 cut(s)	46, 131, 399, 411
NarI	GGCGCC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	124
PinAI	ACCGGT	1 cut(s)	43
PkrI	GCNGC	3 cut(s)	81, 136, 404
PleI	GAGTC	2 cut(s)	136, 203
PluTI	GGCGCC	1 cut(s)	126
PpsI	GAGTC	2 cut(s)	136, 203
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	98
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SalI	GTCGAC	1 cut(s)	139
SatI	GCNGC	3 cut(s)	80, 135, 403
Sau3AI	GATC	1 cut(s)	98
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	2 cut(s)	136, 204
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	3 cut(s)	153, 318, 355
SfoI	GGCGCC	1 cut(s)	124
SinI	GGWCC	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	1 cut(s)	323
SsiI	CCGC	2 cut(s)	208, 403
SspDI	GGCGCC	1 cut(s)	122
SspMI	CTAG	2 cut(s)	152, 183
StyD4I	CCNGG	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	3 cut(s)	11, 140, 218
TasI	AATT	1 cut(s)	323
TauI	GCSGC	1 cut(s)	405
TseI	GCWGC	2 cut(s)	79, 134
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	164
XagI	CCTNNNNNAGG	1 cut(s)	155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	140
XspI	CTAG	2 cut(s)	152, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.