Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011091

Physical Location & Seq

Genomic Coordinates Reverse (-)

55638606 .. 55639013

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00374610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGGTCTGTCGAACTTTCCGGGCGCATCGGAGGGCGTGCTACCGGTGCTGGTAATGAACACGGTGCTGTCGGTGGCGCTACTCAAGAACATGGTGAGATCCGTGTTCCAAGTAATGAGTGGCGCCAATGTGGTGGCTTCTCAGGCCCCAGAGGAGGAGGCAGATGAGTACCCGGAAGTTGCGAGAGAGAGAAGAATCTCGGTGGCCCGGTACAAGTCGCTGTGCCACAAGAAAAGAAAGAGAGGAGGGAGATTGGCTATGGCGGAGTGTTGCGTGTGTCTGTGTGGGTTTGAAGCGGAGCAAGAGGTTAGTGAATTGTCTTGCAAGCATTTCTTCCACAAAGGTTGCTTGGAGAAATGGTTCGACAACGACCACACCACTTGCCCTCTTTGCCGCTCTGTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

135

Amino Acids

15.0

Weight (kDa)

7.52

Isoelectric Point (pI)

60.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	86 - 132	1.1e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	89 - 132	4.4e-13	Ring finger domain
zf-RING_11	PF17123	89 - 117	1.1e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24580 AT1G67856
fragaria_vesca	FvH4_4g25700
malus_domestica	MD08G1159300.v1.1 MD13G1099900.v1.1 MD16G1100900.v1.1
prunus_persica	Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1
pyrus_communis	pycom13g08730 pycom16g08540
rosa_chinensis	RchiOBHm_Chr4g0433131
rosa_laevigata	RLG00000006782
rosa_multiflora	Rmu_co8009482.1_g000001
rosa_roxburghii	Rroxscaffold_5G00374610
rosa_rugosa	Rorug04G0265700
rosa_samantha	Rh4BG328000 Rh4CG343400 Rh4DG323200
rosa_wichuraiana	Rw4G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	396
AciI	CCGC	3 cut(s)	263, 296, 394
AclWI	GGATC	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	2 cut(s)	170, 212
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgeI	ACCGGT	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	293
AloI	GAACNNNNNNTCC	2 cut(s)	344, 376
AlwI	GGATC	1 cut(s)	93
AoxI	GGCC	2 cut(s)	144, 204
AsiGI	ACCGGT	1 cut(s)	43
Asp700I	GAANNNNTTC	1 cut(s)	359
AspLEI	GCGC	3 cut(s)	26, 79, 125
AspS9I	GGNCC	2 cut(s)	145, 205
AsuC2I	CCSGG	3 cut(s)	21, 173, 208
AsuHPI	GGTGA	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	122
BcnI	CCSGG	3 cut(s)	21, 173, 208
BfoI	RGCGCY	2 cut(s)	80, 126
BisI	GCNGC	1 cut(s)	394
BlsI	GCNGC	1 cut(s)	395
Bme1390I	CCNGG	3 cut(s)	21, 173, 208
BmgT120I	GGNCC	2 cut(s)	145, 205
BmiI	GGNNCC	2 cut(s)	124, 147
BmrFI	CCNGG	3 cut(s)	21, 173, 208
BmsI	GCATC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	3 cut(s)	21, 173, 208
BsaHI	GRCGYC	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	155
BseRI	GAGGAG	3 cut(s)	167, 170, 258
BshFI	GGCC	2 cut(s)	146, 206
BshNI	GGYRCC	1 cut(s)	122
BshTI	ACCGGT	1 cut(s)	43
BsiSI	CCGG	4 cut(s)	20, 44, 173, 208
BslI	CCNNNNNNNGG	1 cut(s)	154
BsnI	GGCC	2 cut(s)	146, 206
Bsp143I	GATC	1 cut(s)	98
BspACI	CCGC	3 cut(s)	263, 296, 394
BspANI	GGCC	2 cut(s)	146, 206
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	124, 147
BspPI	GGATC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssMI	GATC	1 cut(s)	98
BssNI	GRCGYC	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	64
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	38, 326
BstDEI	CTNAG	1 cut(s)	141
BstH2I	RGCGCY	2 cut(s)	80, 126
BstHHI	GCGC	3 cut(s)	26, 79, 125
BstKTI	GATC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 143, 390, 402
BstSCI	CCNGG	3 cut(s)	19, 171, 206
BstX2I	RGATCY	1 cut(s)	98
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	146, 206
Cac8I	GCNNGC	2 cut(s)	38, 326
CfoI	GCGC	3 cut(s)	26, 79, 125
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	2 cut(s)	145, 205
Csp6I	GTAC	2 cut(s)	169, 211
CspAI	ACCGGT	1 cut(s)	43
CspCI	CAANNNNNGTGG	4 cut(s)	326, 361, 362, 397
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	4 cut(s)	137, 146, 206, 257
CviKI_1	RGCY	4 cut(s)	137, 146, 206, 257
CviQI	GTAC	2 cut(s)	169, 211
DdeI	CTNAG	1 cut(s)	141
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	145
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
FaeI	CATG	1 cut(s)	94
FaiI	YATR	2 cut(s)	92, 260
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	394
Fsp4HI	GCNGC	1 cut(s)	394
GlaI	GCGC	3 cut(s)	25, 78, 124
GluI	GCNGC	1 cut(s)	394
HaeII	RGCGCY	2 cut(s)	80, 126
HaeIII	GGCC	2 cut(s)	146, 206
HapII	CCGG	4 cut(s)	20, 44, 173, 208
HhaI	GCGC	3 cut(s)	26, 79, 125
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	3 cut(s)	24, 77, 123
HinP1I	GCGC	3 cut(s)	24, 77, 123
HinfI	GANTC	1 cut(s)	195
HpaII	CCGG	4 cut(s)	20, 44, 173, 208
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	324
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 143, 390, 402
HpyF3I	CTNAG	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	3 cut(s)	24, 77, 123
KasI	GGCGCC	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	7 cut(s)	33, 35, 57, 128, 162, 186, 221
LweI	GCATC	1 cut(s)	35
MalI	GATC	1 cut(s)	100
MbiI	CCGCTC	1 cut(s)	396
MboI	GATC	1 cut(s)	98
MboII	GAAGA	2 cut(s)	204, 325
MflI	RGATCY	1 cut(s)	98
MluCI	AATT	1 cut(s)	314
Mly113I	GGCGCC	1 cut(s)	123
MnlI	CCTC	8 cut(s)	25, 145, 148, 151, 236, 239, 298, 396
MroXI	GAANNNNTTC	1 cut(s)	359
MspI	CCGG	4 cut(s)	20, 44, 173, 208
MspR9I	CCNGG	3 cut(s)	21, 173, 208
MwoI	GCNNNNNNNGC	4 cut(s)	46, 143, 390, 402
NarI	GGCGCC	1 cut(s)	123
NciI	CCSGG	3 cut(s)	21, 173, 208
NdeII	GATC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	2 cut(s)	124, 147
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	195
PinAI	ACCGGT	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	395
PluTI	GGCGCC	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	124, 147
PspPI	GGNCC	2 cut(s)	145, 205
PsuI	RGATCY	1 cut(s)	98
RsaI	GTAC	2 cut(s)	170, 212
RsaNI	GTAC	2 cut(s)	169, 211
SatI	GCNGC	1 cut(s)	394
Sau3AI	GATC	1 cut(s)	98
Sau96I	GGNCC	2 cut(s)	145, 205
ScrFI	CCNGG	3 cut(s)	21, 173, 208
SetI	ASST	2 cut(s)	309, 346
SfaNI	GCATC	1 cut(s)	35
SfoI	GGCGCC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	1 cut(s)	314
SsiI	CCGC	3 cut(s)	263, 296, 394
SspDI	GGCGCC	1 cut(s)	122
StyD4I	CCNGG	3 cut(s)	19, 171, 206
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	2 cut(s)	11, 363
TasI	AATT	1 cut(s)	314
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	91
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.