Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011091

Physical Location & Seq

Genomic Coordinates Forward (+)

5665037 .. 5665694

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g08540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCAGTTCTCACTCTATTACATCAATCAAACACGTCTCACACAAACCCTACACGTGTCTCTCTGCTTTCAACTTTTGGCTTTTGGCTTCTGTGTTCTCTATCTAACAAAAAACCAGAAGCACTTTCTCAAATGGGGCTTTCGAACTTCCCGAGTGCAGCAGGGGGCGTGCTGCCATTGCTAGTAATGATCACAGTTTTTTACGTGGCTCTGCTAAAGAACATGGCGAGATCTGTGCTCCAAGTGATGGGTGCCAATATCAATTCCTACACTTTCGACGAGAACCCTGATGGGTGTCCTGAGGAAATGCCTAGAGAGAGAAGAATCTCAATAACCCAGTTCAAATCGTTCTGCAGAAACGGGGGAAAAACAGAGTGCTGCGTCTGTCTCTGCGGGTTCGAAGCAGAGCAAGAAGTGAGCGAGTTGTCCTGCAAGCACTTCTTCCACAAAAGTTGTCTGGAAAAGTGGTTCGACCACAACAGCAGTACGACTTGCCCTCTCTGCCGCTCTATTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

173

Amino Acids

19.19

Weight (kDa)

6.92

Isoelectric Point (pI)

57.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	117 - 169	4.6e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	125 - 169	2.5e-13	Ring finger domain
zf-RING_11	PF17123	125 - 153	1.5e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24580 AT1G67856
fragaria_vesca	FvH4_4g25700
malus_domestica	MD08G1159300.v1.1 MD13G1099900.v1.1 MD16G1100900.v1.1
prunus_persica	Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1
pyrus_communis	pycom13g08730 pycom16g08540
rosa_chinensis	RchiOBHm_Chr4g0433131
rosa_laevigata	RLG00000006782
rosa_multiflora	Rmu_co8009482.1_g000001
rosa_roxburghii	Rroxscaffold_5G00374610
rosa_rugosa	Rorug04G0265700
rosa_samantha	Rh4BG328000 Rh4CG343400 Rh4DG323200
rosa_wichuraiana	Rw4G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccB7I	CCANNNNNTGG	1 cut(s)	247
AccBSI	CCGCTC	1 cut(s)	507
AciI	CCGC	2 cut(s)	393, 505
AcvI	CACGTG	1 cut(s)	56
AfaI	GTAC	1 cut(s)	487
AfiI	CCNNNNNNNGG	1 cut(s)	247
AflIII	ACRYGT	3 cut(s)	33, 53, 55
AgsI	TTSAA	2 cut(s)	72, 343
AjiI	CACGTC	1 cut(s)	36
AloI	GAACNNNNNNTCC	2 cut(s)	452, 484
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	3 cut(s)	42, 64, 392
Ama87I	CYCGRG	1 cut(s)	151
ApeKI	GCWGC	3 cut(s)	158, 172, 378
AsuII	TTCGAA	2 cut(s)	143, 399
AvaI	CYCGRG	1 cut(s)	151
AxyI	CCTNAGG	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	251
BbrPI	CACGTG	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	159, 170, 365
BccI	CCATC	2 cut(s)	241, 284
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BclI	TGATCA	1 cut(s)	189
BcoDI	GTCTC	3 cut(s)	42, 64, 392
BfaI	CTAG	2 cut(s)	182, 312
BfmI	CTRYAG	1 cut(s)	352
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	4 cut(s)	159, 173, 379, 505
BlsI	GCNGC	4 cut(s)	160, 174, 380, 506
BmeT110I	CYCGRG	1 cut(s)	151
BmgBI	CACGTC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	253
BmrI	ACTGGG	1 cut(s)	331
BmuI	ACTGGG	1 cut(s)	331
Bpu14I	TTCGAA	2 cut(s)	143, 399
BsaAI	YACGTR	2 cut(s)	56, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	337
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	1 cut(s)	176
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	337
BseXI	GCAGC	3 cut(s)	159, 170, 365
BsgI	GTGCAG	1 cut(s)	177
BshNI	GGYRCC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	3 cut(s)	42, 64, 392
BsmBI	CGTCTC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	151
Bsp119I	TTCGAA	2 cut(s)	143, 399
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	189, 230
BspACI	CCGC	2 cut(s)	393, 505
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	253
BspMAI	CTGCAG	1 cut(s)	356
BspT104I	TTCGAA	2 cut(s)	143, 399
BspT107I	GGYRCC	1 cut(s)	251
BsrBI	CCGCTC	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	337
BssMI	GATC	2 cut(s)	189, 230
Bst4CI	ACNGT	1 cut(s)	196
BstBAI	YACGTR	2 cut(s)	56, 205
BstBI	TTCGAA	2 cut(s)	143, 399
BstC8I	GCNNGC	2 cut(s)	170, 434
BstDEI	CTNAG	1 cut(s)	300
BstKTI	GATC	2 cut(s)	192, 233
BstMAI	GTCTC	3 cut(s)	42, 64, 392
BstMBI	GATC	2 cut(s)	189, 230
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 501
BstSFI	CTRYAG	1 cut(s)	352
BstV1I	GCAGC	3 cut(s)	159, 170, 365
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
Bsu36I	CCTNAGG	1 cut(s)	300
BtrI	CACGTC	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	170, 434
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	486
CspCI	CAANNNNNGTGG	2 cut(s)	434, 469
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	4 cut(s)	81, 88, 139, 209
CviKI_1	RGCY	4 cut(s)	81, 88, 139, 209
CviQI	GTAC	1 cut(s)	486
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	2 cut(s)	191, 232
DpnII	GATC	2 cut(s)	189, 230
Eco72I	CACGTG	1 cut(s)	56
Eco81I	CCTNAGG	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	151
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	1 cut(s)	226
FaiI	YATR	1 cut(s)	224
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FatI	CATG	1 cut(s)	222
FauI	CCCGC	1 cut(s)	386
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	4 cut(s)	159, 173, 379, 505
Fsp4HI	GCNGC	4 cut(s)	159, 173, 379, 505
FspBI	CTAG	2 cut(s)	182, 312
GluI	GCNGC	4 cut(s)	159, 173, 379, 505
HgaI	GACGC	1 cut(s)	370
Hin1II	CATG	1 cut(s)	226
HinfI	GANTC	1 cut(s)	324
Hpy188III	TCNNGA	3 cut(s)	151, 299, 458
Hpy99I	CGWCG	1 cut(s)	281
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	3 cut(s)	35, 55, 204
HpyCH4V	TGCA	3 cut(s)	158, 354, 432
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 501
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	3 cut(s)	35, 55, 204
Hsp92II	CATG	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	189, 230
LmnI	GCTCC	1 cut(s)	243
LpnPI	CCDG	7 cut(s)	129, 147, 300, 312, 350, 442, 443
Lsp1109I	GCAGC	3 cut(s)	159, 170, 365
MaeI	CTAG	2 cut(s)	182, 312
MaeII	ACGT	3 cut(s)	35, 55, 204
MalI	GATC	2 cut(s)	191, 232
MbiI	CCGCTC	1 cut(s)	507
MboI	GATC	2 cut(s)	189, 230
MboII	GAAGA	2 cut(s)	333, 433
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	1 cut(s)	262
MnlI	CCTC	2 cut(s)	295, 507
MwoI	GCNNNNNNNGC	2 cut(s)	178, 501
NdeII	GATC	2 cut(s)	189, 230
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	1 cut(s)	253
NspV	TTCGAA	2 cut(s)	143, 399
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	324
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	4 cut(s)	160, 174, 380, 506
PmaCI	CACGTG	1 cut(s)	56
PmlI	CACGTG	1 cut(s)	56
Ppu21I	YACGTR	2 cut(s)	56, 205
PspCI	CACGTG	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	230
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
SatI	GCNGC	4 cut(s)	159, 173, 379, 505
Sau3AI	GATC	2 cut(s)	189, 230
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	3 cut(s)	38, 58, 207
SfcI	CTRYAG	1 cut(s)	352
SfuI	TTCGAA	2 cut(s)	143, 399
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	2 cut(s)	393, 505
SspMI	CTAG	2 cut(s)	182, 312
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	3 cut(s)	38, 58, 207
TaqI	TCGA	4 cut(s)	143, 276, 399, 471
TasI	AATT	1 cut(s)	262
TauI	GCSGC	1 cut(s)	507
TfiI	GAWTC	1 cut(s)	324
TseI	GCWGC	3 cut(s)	158, 172, 378
Van91I	CCANNNNNTGG	1 cut(s)	247
XspI	CTAG	2 cut(s)	182, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.