Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8009482.1

Orthogroup ID

OG0011091

Physical Location & Seq

Genomic Coordinates Reverse (-)

39 .. 446

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8009482.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgggtctgtcgaactttccgggcccatcggagggcgtgctaccggtgctggtaatgaacacggtgctgtcggtggcgctactcaagaacatggtgagatccgtgttccaagtaatgagtggcgccaatgtggtggcttctcagaccctagaggaggacgcagatgagtacccggaagttgcgagagagagaagaatctcggtggcccggtacaggtcgctgtgccacaagaaaagcaagagaggagggagattggctatggcggagtgctgcgtgtgtctgtgtgggtttgaagcggagcaagaggttagtgaattgtcttgcaagcatttcttccacaaaggttgcttggagaaatggttcgacaacgaccacaccacttgccctctttgccgctctgtttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

135

Amino Acids

15.02

Weight (kDa)

6.87

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24580 AT1G67856
fragaria_vesca	FvH4_4g25700
malus_domestica	MD08G1159300.v1.1 MD13G1099900.v1.1 MD16G1100900.v1.1
prunus_persica	Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1
pyrus_communis	pycom13g08730 pycom16g08540
rosa_chinensis	RchiOBHm_Chr4g0433131
rosa_laevigata	RLG00000006782
rosa_multiflora	Rmu_co8009482.1_g000001
rosa_roxburghii	Rroxscaffold_5G00374610
rosa_rugosa	Rorug04G0265700
rosa_samantha	Rh4BG328000 Rh4CG343400 Rh4DG323200
rosa_wichuraiana	Rw4G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	396
AciI	CCGC	3 cut(s)	263, 296, 394
AclWI	GGATC	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	2 cut(s)	170, 212
AfiI	CCNNNNNNNGG	4 cut(s)	31, 32, 154, 213
AgeI	ACCGGT	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	293
AloI	GAACNNNNNNTCC	2 cut(s)	344, 376
AlwI	GGATC	1 cut(s)	93
AoxI	GGCC	2 cut(s)	22, 204
ApaI	GGGCCC	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	270
AsiGI	ACCGGT	1 cut(s)	43
Asp700I	GAANNNNTTC	1 cut(s)	359
AspLEI	GCGC	2 cut(s)	79, 125
AspS9I	GGNCC	3 cut(s)	22, 23, 205
AsuC2I	CCSGG	3 cut(s)	21, 173, 208
AsuHPI	GGTGA	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	1 cut(s)	34
BcnI	CCSGG	3 cut(s)	21, 173, 208
BfaI	CTAG	1 cut(s)	149
BfoI	RGCGCY	2 cut(s)	80, 126
BisI	GCNGC	2 cut(s)	271, 394
BlsI	GCNGC	2 cut(s)	272, 395
Bme1390I	CCNGG	3 cut(s)	21, 173, 208
BmgT120I	GGNCC	3 cut(s)	22, 23, 205
BmiI	GGNNCC	2 cut(s)	24, 124
BmrFI	CCNGG	3 cut(s)	21, 173, 208
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	3 cut(s)	21, 173, 208
BsaHI	GRCGYC	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 32, 154, 213
Bse118I	RCCGGY	1 cut(s)	43
BseLI	CCNNNNNNNGG	4 cut(s)	31, 32, 154, 213
BseMII	CTCAG	1 cut(s)	155
BseRI	GAGGAG	2 cut(s)	167, 258
BseSI	GKGCMC	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	257
BshFI	GGCC	2 cut(s)	24, 206
BshNI	GGYRCC	1 cut(s)	122
BshTI	ACCGGT	1 cut(s)	43
BsiSI	CCGG	4 cut(s)	20, 44, 173, 208
BslI	CCNNNNNNNGG	4 cut(s)	31, 32, 154, 213
BsnI	GGCC	2 cut(s)	24, 206
Bsp120I	GGGCCC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	98
BspACI	CCGC	3 cut(s)	263, 296, 394
BspANI	GGCC	2 cut(s)	24, 206
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	24, 124
BspPI	GGATC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssMI	GATC	1 cut(s)	98
BssNI	GRCGYC	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	64
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	38, 326
BstDEI	CTNAG	1 cut(s)	141
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstH2I	RGCGCY	2 cut(s)	80, 126
BstHHI	GCGC	2 cut(s)	79, 125
BstKTI	GATC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 390, 402
BstSCI	CCNGG	3 cut(s)	19, 171, 206
BstSLI	GKGCMC	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	98
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	24, 206
Cac8I	GCNNGC	2 cut(s)	38, 326
CfoI	GCGC	2 cut(s)	79, 125
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	3 cut(s)	22, 23, 205
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	169, 211
CspAI	ACCGGT	1 cut(s)	43
CspCI	CAANNNNNGTGG	4 cut(s)	326, 361, 362, 397
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	4 cut(s)	24, 137, 206, 257
CviKI_1	RGCY	4 cut(s)	24, 137, 206, 257
CviQI	GTAC	2 cut(s)	169, 211
DdeI	CTNAG	1 cut(s)	141
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	26
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	26
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
FaeI	CATG	1 cut(s)	94
FaiI	YATR	2 cut(s)	92, 260
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	271, 394
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	271, 394
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	2 cut(s)	78, 124
GluI	GCNGC	2 cut(s)	271, 394
HaeII	RGCGCY	2 cut(s)	80, 126
HaeIII	GGCC	2 cut(s)	24, 206
HapII	CCGG	4 cut(s)	20, 44, 173, 208
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	2 cut(s)	79, 125
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	2 cut(s)	77, 123
HinP1I	GCGC	2 cut(s)	77, 123
HinfI	GANTC	1 cut(s)	195
HpaII	CCGG	4 cut(s)	20, 44, 173, 208
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	31, 144
Hpy188III	TCNNGA	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	324
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 390, 402
HpyF3I	CTNAG	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	2 cut(s)	77, 123
KasI	GGCGCC	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	6 cut(s)	33, 35, 57, 186, 199, 221
Lsp1109I	GCAGC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	149
MalI	GATC	1 cut(s)	100
MbiI	CCGCTC	1 cut(s)	396
MboI	GATC	1 cut(s)	98
MboII	GAAGA	2 cut(s)	204, 325
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	1 cut(s)	314
Mly113I	GGCGCC	1 cut(s)	123
MnlI	CCTC	7 cut(s)	25, 145, 148, 236, 239, 298, 396
MroXI	GAANNNNTTC	1 cut(s)	359
MspI	CCGG	4 cut(s)	20, 44, 173, 208
MspR9I	CCNGG	3 cut(s)	21, 173, 208
MwoI	GCNNNNNNNGC	3 cut(s)	46, 390, 402
NarI	GGCGCC	1 cut(s)	123
NciI	CCSGG	3 cut(s)	21, 173, 208
NdeII	GATC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	2 cut(s)	24, 124
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	195
PinAI	ACCGGT	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	272, 395
PluTI	GGCGCC	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	24, 124
PspOMI	GGGCCC	1 cut(s)	22
PspPI	GGNCC	3 cut(s)	22, 23, 205
PsuI	RGATCY	1 cut(s)	98
RsaI	GTAC	2 cut(s)	170, 212
RsaNI	GTAC	2 cut(s)	169, 211
SatI	GCNGC	2 cut(s)	271, 394
Sau3AI	GATC	1 cut(s)	98
Sau96I	GGNCC	3 cut(s)	22, 23, 205
ScrFI	CCNGG	3 cut(s)	21, 173, 208
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	3 cut(s)	218, 309, 346
SfoI	GGCGCC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	1 cut(s)	314
SsiI	CCGC	3 cut(s)	263, 296, 394
SspDI	GGCGCC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	3 cut(s)	19, 171, 206
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	2 cut(s)	11, 363
TasI	AATT	1 cut(s)	314
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	1 cut(s)	195
TseI	GCWGC	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	91
XagI	CCTNNNNNAGG	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.