Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011091

Physical Location & Seq

Genomic Coordinates Forward (+)

6981801 .. 6982187

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1100900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGGATTTCGAACTTCCCGCCTGCAGTAGGGGGCGTGCTGCCATTGCTAGTAATGAACACAGTTTTTTCGGTGGCTCTGCTAAAGAACATGGCGAGATCTGTGCTCCAAGTGATGGGTGCCAATATCAATTCCCACACTTTCGACGAGAACCCTGATGGGTGTCCTGAGGAAATGTCTAGAGGGAGAAGAATCTCAATGACCCAGTTCAAATCGTTCTGCAGAAACAGGGGACAAACAGAGTGCTGCGTCTGTCTCTGCGGGTTCGAAGCAGAGGAAGAAGTGAGCGAGTTGTCCTGCAAGCACTTCTTCCACAAAAGTTGTCTGGAAAAGTGGTTCGAGCACAACAACAGTACGACTTGCCCTCTCTGCCGCTCTGTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

129

Amino Acids

14.32

Weight (kDa)

6.07

Isoelectric Point (pI)

59.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	73 - 125	1.3e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	81 - 125	6.2e-14	Ring finger domain
zf-RING_11	PF17123	81 - 109	2.5e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24580 AT1G67856
fragaria_vesca	FvH4_4g25700
malus_domestica	MD08G1159300.v1.1 MD13G1099900.v1.1 MD16G1100900.v1.1
prunus_persica	Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1
pyrus_communis	pycom13g08730 pycom16g08540
rosa_chinensis	RchiOBHm_Chr4g0433131
rosa_laevigata	RLG00000006782
rosa_multiflora	Rmu_co8009482.1_g000001
rosa_roxburghii	Rroxscaffold_5G00374610
rosa_rugosa	Rorug04G0265700
rosa_samantha	Rh4BG328000 Rh4CG343400 Rh4DG323200
rosa_wichuraiana	Rw4G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccB7I	CCANNNNNTGG	1 cut(s)	115
AccBSI	CCGCTC	1 cut(s)	375
AciI	CCGC	3 cut(s)	20, 261, 373
AfaI	GTAC	1 cut(s)	355
AfiI	CCNNNNNNNGG	2 cut(s)	29, 115
AgsI	TTSAA	1 cut(s)	211
AloI	GAACNNNNNNTCC	2 cut(s)	320, 352
Alw21I	GWGCWC	2 cut(s)	108, 345
Alw26I	GTCTC	1 cut(s)	260
ApeKI	GCWGC	2 cut(s)	40, 246
AsuII	TTCGAA	2 cut(s)	11, 267
AxyI	CCTNAGG	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	119
Bbv12I	GWGCWC	2 cut(s)	108, 345
BbvI	GCAGC	2 cut(s)	27, 233
BccI	CCATC	2 cut(s)	109, 152
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	2 cut(s)	50, 180
BfmI	CTRYAG	2 cut(s)	24, 220
BglII	AGATCT	1 cut(s)	98
BisI	GCNGC	3 cut(s)	41, 247, 373
BlsI	GCNGC	3 cut(s)	42, 248, 374
BmiI	GGNNCC	1 cut(s)	121
BmrI	ACTGGG	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	199
Bpu14I	TTCGAA	2 cut(s)	11, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 115
Bse1I	ACTGG	1 cut(s)	205
Bse21I	CCTNAGG	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	29, 115
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	27, 233
BshNI	GGYRCC	1 cut(s)	119
BsiHKAI	GWGCWC	2 cut(s)	108, 345
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	29, 115
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	246
Bsp119I	TTCGAA	2 cut(s)	11, 267
Bsp1286I	GDGCHC	2 cut(s)	108, 345
Bsp143I	GATC	1 cut(s)	98
BspACI	CCGC	3 cut(s)	20, 261, 373
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	121
BspMAI	CTGCAG	2 cut(s)	28, 224
BspT104I	TTCGAA	2 cut(s)	11, 267
BspT107I	GGYRCC	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	205
BssMI	GATC	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	64, 353
BstBI	TTCGAA	2 cut(s)	11, 267
BstC8I	GCNNGC	3 cut(s)	24, 38, 302
BstDEI	CTNAG	1 cut(s)	168
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstKTI	GATC	1 cut(s)	101
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 369
BstSFI	CTRYAG	2 cut(s)	24, 220
BstV1I	GCAGC	2 cut(s)	27, 233
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
Bsu36I	CCTNAGG	1 cut(s)	168
Cac8I	GCNNGC	3 cut(s)	24, 38, 302
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	354
CspCI	CAANNNNNGTGG	2 cut(s)	302, 337
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	1 cut(s)	77
CviKI_1	RGCY	1 cut(s)	77
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
Eco81I	CCTNAGG	1 cut(s)	168
EcoNI	CCTNNNNNAGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	94
FaiI	YATR	1 cut(s)	92
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	1 cut(s)	90
FauI	CCCGC	2 cut(s)	27, 254
Fnu4HI	GCNGC	3 cut(s)	41, 247, 373
Fsp4HI	GCNGC	3 cut(s)	41, 247, 373
FspBI	CTAG	2 cut(s)	50, 180
GluI	GCNGC	3 cut(s)	41, 247, 373
HgaI	GACGC	1 cut(s)	238
Hin1II	CATG	1 cut(s)	94
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	1 cut(s)	192
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188III	TCNNGA	3 cut(s)	167, 180, 326
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4III	ACNGT	2 cut(s)	64, 353
HpyCH4V	TGCA	3 cut(s)	26, 222, 300
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 369
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	7 cut(s)	36, 168, 180, 214, 218, 310, 311
Lsp1109I	GCAGC	2 cut(s)	27, 233
MaeI	CTAG	2 cut(s)	50, 180
MalI	GATC	1 cut(s)	100
MbiI	CCGCTC	1 cut(s)	375
MboI	GATC	1 cut(s)	98
MboII	GAAGA	3 cut(s)	201, 290, 301
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	2 cut(s)	108, 345
MluCI	AATT	1 cut(s)	130
MnlI	CCTC	4 cut(s)	163, 176, 268, 375
MwoI	GCNNNNNNNGC	2 cut(s)	46, 369
NdeII	GATC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	121
NspV	TTCGAA	2 cut(s)	11, 267
PfeI	GAWTC	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	115
PkrI	GCNGC	3 cut(s)	42, 248, 374
PspN4I	GGNNCC	1 cut(s)	121
PstI	CTGCAG	2 cut(s)	28, 224
PsuI	RGATCY	1 cut(s)	98
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
SatI	GCNGC	3 cut(s)	41, 247, 373
Sau3AI	GATC	1 cut(s)	98
SduI	GDGCHC	2 cut(s)	108, 345
SfcI	CTRYAG	2 cut(s)	24, 220
SfuI	TTCGAA	2 cut(s)	11, 267
Sse9I	AATT	1 cut(s)	130
SsiI	CCGC	3 cut(s)	20, 261, 373
SspMI	CTAG	2 cut(s)	50, 180
TaaI	ACNGT	2 cut(s)	64, 353
TaqI	TCGA	4 cut(s)	11, 144, 267, 339
TasI	AATT	1 cut(s)	130
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	192
TseI	GCWGC	2 cut(s)	40, 246
TspDTI	ATGAA	1 cut(s)	71
Van91I	CCANNNNNTGG	1 cut(s)	115
XagI	CCTNNNNNAGG	1 cut(s)	27
XbaI	TCTAGA	1 cut(s)	179
XspI	CTAG	2 cut(s)	50, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.