Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011091

Physical Location & Seq

Genomic Coordinates Forward (+)

18034345 .. 18034746

Gene Structure 402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1159300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTGTTTTACATCAAGGGTCGGGTCAGGTCTATTCTTCGTCGTTTCGCTGCTGCCATTGCTAGTAATGAACGCAGTTTTGTTAGTGGCTCTGCTAAAGAACATGGCGAGATCTGTGCTCCAAGTGATGGGTGCCAATATCAATTCCCACACTTTCGACGAGAACCCTGATGATGGGTGTCCTGAGGAAATGTCTAGAGGGAGAAGAATCTCAATAACCCAGTTCAAATCATTCTGCATGAACAAGGGAAAAACAGAGTGCTGCATCTGTCTCTGCGGGTTCGAAGCAGAGCAAGAAATGAGTGAGTTGTCATGCAAGCACTTTTTCCACAAAAGTTGTTTAGAAAAGTGGTTCGACCACAACAACAGTATGACTTGCCATATCTACCGCTCTACTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010498 GO:0010646 GO:0010647 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080134 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

134

Amino Acids

15.09

Weight (kDa)

6.92

Isoelectric Point (pI)

65.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	86 - 126	3e-10	Ring finger domain
zf-RING_11	PF17123	86 - 114	7.1e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24580 AT1G67856
fragaria_vesca	FvH4_4g25700
malus_domestica	MD08G1159300.v1.1 MD13G1099900.v1.1 MD16G1100900.v1.1
prunus_persica	Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1 Prupe.1G246100_v2.0.a1
pyrus_communis	pycom13g08730 pycom16g08540
rosa_chinensis	RchiOBHm_Chr4g0433131
rosa_laevigata	RLG00000006782
rosa_multiflora	Rmu_co8009482.1_g000001
rosa_roxburghii	Rroxscaffold_5G00374610
rosa_rugosa	Rorug04G0265700
rosa_samantha	Rh4BG328000 Rh4CG343400 Rh4DG323200
rosa_wichuraiana	Rw4G027770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccB7I	CCANNNNNTGG	1 cut(s)	127
AccBSI	CCGCTC	1 cut(s)	390
AciI	CCGC	2 cut(s)	276, 388
AfiI	CCNNNNNNNGG	2 cut(s)	127, 173
AgsI	TTSAA	1 cut(s)	226
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	275
ApeKI	GCWGC	3 cut(s)	49, 52, 261
AsuII	TTCGAA	1 cut(s)	282
AxyI	CCTNAGG	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	36, 39, 248
BccI	CCATC	2 cut(s)	121, 167
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	2 cut(s)	62, 195
BglII	AGATCT	1 cut(s)	110
BisI	GCNGC	3 cut(s)	50, 53, 262
BlsI	GCNGC	3 cut(s)	51, 54, 263
BmiI	GGNNCC	1 cut(s)	133
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	214
Bpu14I	TTCGAA	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 173
Bse1I	ACTGG	1 cut(s)	220
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	2 cut(s)	127, 173
BseMI	GCAATG	1 cut(s)	56
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	3 cut(s)	36, 39, 248
BshNI	GGYRCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	120
BslI	CCNNNNNNNGG	2 cut(s)	127, 173
BsmAI	GTCTC	1 cut(s)	275
Bsp119I	TTCGAA	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	110
BspACI	CCGC	2 cut(s)	276, 388
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	133
BspT104I	TTCGAA	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	131
BsrBI	CCGCTC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	368
BstBI	TTCGAA	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	183
BstKTI	GATC	1 cut(s)	113
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	110
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstV1I	GCAGC	3 cut(s)	36, 39, 248
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
Bsu36I	CCTNAGG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	317
CspCI	CAANNNNNGTGG	2 cut(s)	317, 352
CviAII	CATG	3 cut(s)	103, 238, 312
CviJI	RGCY	1 cut(s)	89
CviKI_1	RGCY	1 cut(s)	89
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	112
DpnII	GATC	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	183
FaeI	CATG	3 cut(s)	106, 241, 315
FaiI	YATR	5 cut(s)	104, 239, 313, 371, 381
FatI	CATG	3 cut(s)	102, 237, 311
FauI	CCCGC	1 cut(s)	269
Fnu4HI	GCNGC	3 cut(s)	50, 53, 262
Fsp4HI	GCNGC	3 cut(s)	50, 53, 262
FspBI	CTAG	2 cut(s)	62, 195
GluI	GCNGC	3 cut(s)	50, 53, 262
Hin1II	CATG	3 cut(s)	106, 241, 315
HinfI	GANTC	1 cut(s)	207
Hpy188III	TCNNGA	2 cut(s)	182, 195
Hpy99I	CGWCG	2 cut(s)	44, 161
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4V	TGCA	3 cut(s)	237, 264, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	106, 241, 315
Kzo9I	GATC	1 cut(s)	110
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	4 cut(s)	12, 180, 195, 233
Lsp1109I	GCAGC	3 cut(s)	36, 39, 248
LweI	GCATC	1 cut(s)	273
MaeI	CTAG	2 cut(s)	62, 195
MalI	GATC	1 cut(s)	112
MbiI	CCGCTC	1 cut(s)	390
MboI	GATC	1 cut(s)	110
MboII	GAAGA	2 cut(s)	28, 216
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	1 cut(s)	142
MnlI	CCTC	2 cut(s)	178, 191
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	1 cut(s)	110
NlaIII	CATG	3 cut(s)	106, 241, 315
NlaIV	GGNNCC	1 cut(s)	133
NspV	TTCGAA	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	207
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	3 cut(s)	51, 54, 263
PspN4I	GGNNCC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	110
SatI	GCNGC	3 cut(s)	50, 53, 262
Sau3AI	GATC	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	1 cut(s)	31
SfaNI	GCATC	1 cut(s)	273
SfuI	TTCGAA	1 cut(s)	282
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	2 cut(s)	276, 388
SspMI	CTAG	2 cut(s)	62, 195
TaaI	ACNGT	1 cut(s)	368
TaqI	TCGA	3 cut(s)	156, 282, 354
TasI	AATT	1 cut(s)	142
TfiI	GAWTC	1 cut(s)	207
TseI	GCWGC	3 cut(s)	49, 52, 261
TspDTI	ATGAA	2 cut(s)	83, 254
Van91I	CCANNNNNTGG	1 cut(s)	127
XbaI	TCTAGA	1 cut(s)	194
XspI	CTAG	2 cut(s)	62, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.