Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014429

Physical Location & Seq

Genomic Coordinates Forward (+)

25477670 .. 25478803

Gene Structure 1134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G67940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCCATCACTTTGGTCTAACGAATCCGATGGATCATTACGAGAGCATCTTGTGGATGTTGTTGTGTCTGGTTCAGAACCAAAGATTCGGGTACATGATCTGACCCGAGTCGCCGATGATGGATCTCGGATCTTGAAAGGAGTTACGATAGATATACCAAAAGGTATGATCGTTGGTGTGATTGGACCTAGTGGAAGTGGAAAGTCAACGTTTTTGAGATCTCTGAATCGTCTTTGGGAACCACCGGAGTCAACTGTGTTCTTGGACGGTGAAGATATAACCAACGTTGATGTTATTGCTCTTCGTCGTAGAGTTGGAATGCTTTTTCAGCTTCCTGTTCTTTTTCAAGGGACTGTTGCGGATAATGTGAGATATGGTCCGAATTTGAGAGGGGAGAAACTAAGTGACGAAGAGGTTTATAAGCTGCTAAGTCTTGCAGACCTTGATGCTTCCTTTGCTAAGAAGACTGGTGCAGAGTTATCTGTGGGTCAAGCTCAACGAGTAGCACTTGCAAGGACTCTAGCCAACGAGCCTGAGGTGTTGCTGCTCGATGAACCAACAAGTGCTCTTGATCCGATATCGACAGAGAACATTGAGGATGTTATAGTGAAACTGAAGAAGCAGAGAGGGATTACTACTGTGATTGTTTCTCACAGTATCAAGCAGATTCAGAAAGTTGCTGATATCGTTTGCCTTGTTGTCGACGGAGAGATTGTTGAAGTTCTTAAACCAAGTGAGCTTTCGCACGCTACGCATCCAATGGCACAGAGGTTTCTTCAACTCAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0010035 GO:0010038 GO:0010044 GO:0012506 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0031090 GO:0031982 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0090481 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

263

Amino Acids

28.68

Weight (kDa)

5.34

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	45 - 188	1.3e-31	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67940
fragaria_vesca	FvH4_4g06671 FvH4_4g06671
malus_domestica	MD13G1237100.v1.1 MD16G1242500.v1.1
prunus_persica	Prupe.1G069500_v2.0.a1
pyrus_communis	pycom16g20320 pycom16g20330
rosa_chinensis	RchiOBHm_Chr4g0398581
rosa_laevigata	RLG00000009342
rosa_roxburghii	Rroxscaffold_5G00343550
rosa_rugosa	Rorug04G0009500 Rorug04G0009600.1
rosa_samantha	Rh4AG087500 Rh4BG084100 Rh4CG095700 Rh4DG079000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
AccI	GTMKAC	1 cut(s)	702
AciI	CCGC	1 cut(s)	359
AclI	AACGTT	2 cut(s)	209, 285
AclWI	GGATC	4 cut(s)	40, 130, 137, 566
AcsI	RAATTY	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	635
AfaI	GTAC	1 cut(s)	93
AgsI	TTSAA	4 cut(s)	136, 347, 719, 779
AjuI	GAANNNNNNNTTGG	2 cut(s)	724, 756
AluBI	AGCT	4 cut(s)	331, 424, 494, 739
AluI	AGCT	4 cut(s)	331, 424, 494, 739
Alw21I	GWGCWC	1 cut(s)	568
AlwI	GGATC	4 cut(s)	40, 130, 137, 566
Ama87I	CYCGRG	1 cut(s)	105
ApeKI	GCWGC	2 cut(s)	424, 544
ApoI	RAATTY	1 cut(s)	382
AspS9I	GGNCC	2 cut(s)	185, 377
AsuHPI	GGTGA	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	105
AvaII	GGWCC	2 cut(s)	185, 377
AxyI	CCTNAGG	1 cut(s)	534
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	2 cut(s)	411, 531
BccI	CCATC	3 cut(s)	13, 23, 113
BfaI	CTAG	2 cut(s)	189, 521
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	2 cut(s)	425, 545
BlsI	GCNGC	2 cut(s)	426, 546
Bme18I	GGWCC	2 cut(s)	185, 377
BmeT110I	CYCGRG	1 cut(s)	105
BmgT120I	GGNCC	2 cut(s)	185, 377
BmiI	GGNNCC	1 cut(s)	240
BmsI	GCATC	3 cut(s)	55, 436, 763
BoxI	GACNNNNGTC	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	470
BsaWI	WCCGGW	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	699, 729
Bse1I	ACTGG	1 cut(s)	472
Bse21I	CCTNAGG	1 cut(s)	534
BseGI	GGATG	3 cut(s)	61, 604, 754
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	1 cut(s)	472
BseXI	GCAGC	2 cut(s)	411, 531
BsgI	GTGCAG	1 cut(s)	492
BsiHKAI	GWGCWC	1 cut(s)	568
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	324
BsoBI	CYCGRG	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp143I	GATC	7 cut(s)	32, 97, 122, 129, 168, 218, 571
BspACI	CCGC	1 cut(s)	359
BspCNI	CTCAG	1 cut(s)	526
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	4 cut(s)	40, 130, 137, 566
BspQI	GCTCTTC	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	472
BssMI	GATC	7 cut(s)	32, 97, 122, 129, 168, 218, 571
Bst4CI	ACNGT	5 cut(s)	256, 269, 355, 640, 656
Bst6I	CTCTTC	2 cut(s)	306, 405
BstC8I	GCNNGC	1 cut(s)	747
BstDEI	CTNAG	5 cut(s)	401, 428, 459, 534, 782
BstF5I	GGATG	3 cut(s)	61, 604, 754
BstKTI	GATC	7 cut(s)	35, 100, 125, 132, 171, 221, 574
BstMBI	GATC	7 cut(s)	32, 97, 122, 129, 168, 218, 571
BstMWI	GCNNNNNNNGC	3 cut(s)	328, 455, 751
BstPAI	GACNNNNGTC	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	411, 531
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	3 cut(s)	122, 129, 218
BstXI	CCANNNNNNTGG	1 cut(s)	12
BstYI	RGATCY	3 cut(s)	122, 129, 218
Bsu36I	CCTNAGG	1 cut(s)	534
BtsCI	GGATG	3 cut(s)	61, 604, 754
Cac8I	GCNNGC	1 cut(s)	747
Cfr13I	GGNCC	2 cut(s)	185, 377
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	6 cut(s)	331, 424, 494, 524, 532, 739
CviKI_1	RGCY	6 cut(s)	331, 424, 494, 524, 532, 739
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	5 cut(s)	401, 428, 459, 534, 782
DpnI	GATC	7 cut(s)	34, 99, 124, 131, 170, 220, 573
DpnII	GATC	7 cut(s)	32, 97, 122, 129, 168, 218, 571
Eam1104I	CTCTTC	2 cut(s)	306, 405
EarI	CTCTTC	2 cut(s)	306, 405
Eco32I	GATATC	2 cut(s)	579, 685
Eco47I	GGWCC	2 cut(s)	185, 377
Eco57I	CTGAAG	1 cut(s)	635
Eco81I	CCTNAGG	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	105
EcoRV	GATATC	2 cut(s)	579, 685
FaeI	CATG	1 cut(s)	98
FaiI	YATR	7 cut(s)	96, 155, 167, 278, 375, 420, 605
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	702
Fnu4HI	GCNGC	2 cut(s)	425, 545
FokI	GGATG	3 cut(s)	68, 611, 741
Fsp4HI	GCNGC	2 cut(s)	425, 545
FspBI	CTAG	2 cut(s)	189, 521
GluI	GCNGC	2 cut(s)	425, 545
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	1 cut(s)	98
HincII	GTYRAC	3 cut(s)	207, 252, 703
HindII	GTYRAC	3 cut(s)	207, 252, 703
HinfI	GANTC	7 cut(s)	23, 85, 108, 226, 248, 517, 667
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	3 cut(s)	207, 252, 703
Hpy188I	TCNGA	8 cut(s)	28, 76, 102, 129, 225, 381, 576, 672
Hpy188III	TCNNGA	3 cut(s)	133, 569, 789
Hpy8I	GTNNAC	3 cut(s)	207, 252, 703
Hpy99I	CGWCG	2 cut(s)	309, 707
HpyCH4III	ACNGT	5 cut(s)	256, 269, 355, 640, 656
HpyCH4IV	ACGT	2 cut(s)	209, 285
HpyCH4V	TGCA	3 cut(s)	437, 473, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	328, 455, 751
HpyF3I	CTNAG	5 cut(s)	401, 428, 459, 534, 782
HpySE526I	ACGT	2 cut(s)	209, 285
Hsp92II	CATG	1 cut(s)	98
Kzo9I	GATC	7 cut(s)	32, 97, 122, 129, 168, 218, 571
LguI	GCTCTTC	1 cut(s)	306
LpnPI	CCDG	5 cut(s)	54, 258, 348, 453, 546
Lsp1109I	GCAGC	2 cut(s)	411, 531
LweI	GCATC	3 cut(s)	55, 436, 763
MaeI	CTAG	2 cut(s)	189, 521
MaeII	ACGT	2 cut(s)	209, 285
MaeIII	GTNAC	2 cut(s)	142, 404
MalI	GATC	7 cut(s)	34, 99, 124, 131, 170, 220, 573
MboI	GATC	7 cut(s)	32, 97, 122, 129, 168, 218, 571
MboII	GAAGA	6 cut(s)	284, 293, 422, 475, 628, 767
MflI	RGATCY	3 cut(s)	122, 129, 218
MhlI	GDGCHC	1 cut(s)	568
MluCI	AATT	1 cut(s)	382
MlyI	GAGTC	3 cut(s)	117, 257, 511
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	6 cut(s)	383, 406, 529, 589, 620, 762
MseI	TTAA	1 cut(s)	726
MspI	CCGG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	328, 455, 751
NdeII	GATC	7 cut(s)	32, 97, 122, 129, 168, 218, 571
NlaIII	CATG	1 cut(s)	98
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	404
PciSI	GCTCTTC	1 cut(s)	306
PctI	GAATGC	1 cut(s)	324
PfeI	GAWTC	4 cut(s)	23, 85, 226, 667
PkrI	GCNGC	2 cut(s)	426, 546
PleI	GAGTC	3 cut(s)	116, 256, 511
PpsI	GAGTC	3 cut(s)	116, 256, 511
PshAI	GACNNNNGTC	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	420
Psp1406I	AACGTT	2 cut(s)	209, 285
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	185, 377
PsuI	RGATCY	3 cut(s)	122, 129, 218
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SalI	GTCGAC	1 cut(s)	701
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	726
SatI	GCNGC	2 cut(s)	425, 545
Sau3AI	GATC	7 cut(s)	32, 97, 122, 129, 168, 218, 571
Sau96I	GGNCC	2 cut(s)	185, 377
SchI	GAGTC	3 cut(s)	117, 257, 511
SduI	GDGCHC	1 cut(s)	568
SfaNI	GCATC	3 cut(s)	55, 436, 763
SinI	GGWCC	2 cut(s)	185, 377
Sse9I	AATT	1 cut(s)	382
SsiI	CCGC	1 cut(s)	359
SspMI	CTAG	2 cut(s)	189, 521
TaaI	ACNGT	5 cut(s)	256, 269, 355, 640, 656
TaiI	ACGT	2 cut(s)	212, 288
TaqI	TCGA	3 cut(s)	549, 581, 702
TasI	AATT	1 cut(s)	382
TfiI	GAWTC	4 cut(s)	23, 85, 226, 667
Tru1I	TTAA	1 cut(s)	726
Tru9I	TTAA	1 cut(s)	726
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	2 cut(s)	424, 544
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	1 cut(s)	567
TspGWI	ACGGA	1 cut(s)	720
VpaK11BI	GGWCC	2 cut(s)	185, 377
XapI	RAATTY	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	702
XspI	CTAG	2 cut(s)	189, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.