Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014429

Physical Location & Seq

Genomic Coordinates Reverse (-)

51332126 .. 51334545

Gene Structure 2420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009342

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGACTTCTCAGGCACACATCGCTCTTTCAGCAGAGGAGAATGAAGAAGAAGAAGCAGTACTGGTAATCAATGATGGAGAAGCTGACGGCAACGTGAAGTTTCGGATACGAAATCTGACCAGAAGATCAGAGAGTACAGGAGGAGGAGGAGGAGCTATCATACTGAATCAGCTGAGCGTGGACATCCCAAAAGGAGTGATCGTCGGAATCATAGGCCCAAGTGGCAGTGGCAAATCCACGCTTCTCCGAGTACTCAACCGCCTCTGGGAGCCGCCGGCCGGCACGGTCTTCTTGGACGGCCATGATATTAAAAAACTCGATGTTCTCAGTCTCCGGAGGAAGGTCGGAATGCTCTTCCAGCTTCCTGTTCTTTTTGAAGGTACTGTAGCAGACAACGTTCGTTATGGTCCTCAGTTGAGTGGGAAGAAGCTGACTGACCAAGATGTTCAAAAGCTACTGACCCTTGCTGGCCTTGACTCATCTTTTTTCAGTAAAACAGGTTCTGAAATATCTGTAGGCCAAGCCCAAAGAGTTGCACTTGCTAGGACCCTAGCCAATTCACCTGAGGTTTTGCTGTTAGACGAGCCTACTAGCGCCTTGGATCCAATATCAACAGAGCACATAGAAGGTGTTTTGGAAAAGCTGAAGAAGAAACAGGGCATGACAATCATAATGGTCTCACACAGCATCAAACAAATCCAGAGAATTGCTGATGTAGTGTGTCTCCTTGTGAATGGTGAGGTTGTTGAAGTTTTAAAACCAGATAAACTCTCAGAAGCCAAGCACCCTATGGCCTTGAGGTTTCTTGAACTCAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0010035 GO:0010038 GO:0010044 GO:0012506 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0031090 GO:0031982 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0090481 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

274

Amino Acids

29.47

Weight (kDa)

6.01

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	55 - 198	1.1e-33	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67940
fragaria_vesca	FvH4_4g06671 FvH4_4g06671
malus_domestica	MD13G1237100.v1.1 MD16G1242500.v1.1
prunus_persica	Prupe.1G069500_v2.0.a1
pyrus_communis	pycom16g20320 pycom16g20330
rosa_chinensis	RchiOBHm_Chr4g0398581
rosa_laevigata	RLG00000009342
rosa_roxburghii	Rroxscaffold_5G00343550
rosa_rugosa	Rorug04G0009500 Rorug04G0009600.1
rosa_samantha	Rh4AG087500 Rh4BG084100 Rh4CG095700 Rh4DG079000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	333
AciI	CCGC	2 cut(s)	259, 272
AclI	AACGTT	1 cut(s)	396
AclWI	GGATC	2 cut(s)	596, 609
AcoI	YGGCCR	2 cut(s)	276, 298
AcuI	CTGAAG	1 cut(s)	665
AfaI	GTAC	4 cut(s)	60, 136, 252, 382
AfiI	CCNNNNNNNGG	3 cut(s)	265, 278, 340
AgsI	TTSAA	4 cut(s)	377, 449, 749, 809
AluBI	AGCT	8 cut(s)	83, 155, 172, 361, 430, 454, 643, 816
AluI	AGCT	8 cut(s)	83, 155, 172, 361, 430, 454, 643, 816
Alw21I	GWGCWC	1 cut(s)	621
Alw26I	GTCTC	3 cut(s)	335, 682, 728
AlwI	GGATC	2 cut(s)	596, 609
AlwNI	CAGNNNCTG	1 cut(s)	503
Aor13HI	TCCGGA	1 cut(s)	333
AoxI	GGCC	6 cut(s)	214, 276, 298, 469, 517, 792
AspLEI	GCGC	1 cut(s)	596
AspS9I	GGNCC	3 cut(s)	215, 407, 546
AsuHPI	GGTGA	2 cut(s)	552, 749
AvaII	GGWCC	2 cut(s)	407, 546
AxyI	CCTNAGG	1 cut(s)	564
BamHI	GGATCC	1 cut(s)	601
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
BbsI	GAAGAC	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	621
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	2 cut(s)	103, 313
BciVI	GTATCC	1 cut(s)	99
BcoDI	GTCTC	3 cut(s)	335, 682, 728
BfaI	CTAG	3 cut(s)	543, 551, 591
BfmI	CTRYAG	2 cut(s)	384, 513
BfoI	RGCGCY	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	99
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	1 cut(s)	272
BlpI	GCTNAGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	273
BmcAI	AGTACT	2 cut(s)	60, 252
Bme18I	GGWCC	2 cut(s)	407, 546
BmgT120I	GGNCC	3 cut(s)	215, 407, 546
BmiI	GGNNCC	3 cut(s)	270, 548, 603
BmsI	GCATC	1 cut(s)	696
BpiI	GAAGAC	1 cut(s)	280
Bpu1102I	GCTNAGC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	817
BsaI	GGTCTC	1 cut(s)	682
BsaJI	CCNNGG	1 cut(s)	597
BsaWI	WCCGGW	1 cut(s)	333
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	3 cut(s)	265, 278, 340
Bse118I	RCCGGY	2 cut(s)	274, 278
Bse1I	ACTGG	1 cut(s)	66
Bse21I	CCTNAGG	1 cut(s)	564
BseAI	TCCGGA	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	3 cut(s)	265, 278, 340
BseMII	CTCAG	6 cut(s)	23, 164, 340, 425, 555, 786
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	5 cut(s)	50, 156, 159, 162, 165
BseX3I	CGGCCG	1 cut(s)	276
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	6 cut(s)	216, 278, 300, 471, 519, 794
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	621
BsiSI	CCGG	3 cut(s)	275, 279, 334
BslI	CCNNNNNNNGG	3 cut(s)	265, 278, 340
BsmAI	GTCTC	3 cut(s)	335, 682, 728
BsmI	GAATGC	1 cut(s)	354
BsnI	GGCC	6 cut(s)	216, 278, 300, 471, 519, 794
Bso31I	GGTCTC	1 cut(s)	682
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp13I	TCCGGA	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	125, 198, 601
Bsp1720I	GCTNAGC	1 cut(s)	173
BspACI	CCGC	2 cut(s)	259, 272
BspANI	GGCC	6 cut(s)	216, 278, 300, 471, 519, 794
BspCNI	CTCAG	6 cut(s)	22, 165, 339, 424, 556, 785
BspEI	TCCGGA	1 cut(s)	333
BspLI	GGNNCC	3 cut(s)	270, 548, 603
BspPI	GGATC	2 cut(s)	596, 609
BspQI	GCTCTTC	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	682
BsrFI	RCCGGY	2 cut(s)	274, 278
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	2 cut(s)	274, 278
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	3 cut(s)	125, 198, 601
BssT1I	CCWWGG	1 cut(s)	597
Bst4CI	ACNGT	2 cut(s)	286, 385
Bst6I	CTCTTC	1 cut(s)	359
BstC8I	GCNNGC	3 cut(s)	276, 280, 469
BstDEI	CTNAG	7 cut(s)	9, 173, 326, 411, 564, 772, 812
BstF5I	GGATG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	597
BstHHI	GCGC	1 cut(s)	596
BstKTI	GATC	3 cut(s)	128, 201, 604
BstMAI	GTCTC	3 cut(s)	335, 682, 728
BstMBI	GATC	3 cut(s)	125, 198, 601
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 29, 222, 358
BstSFI	CTRYAG	2 cut(s)	384, 513
BstV2I	GAAGAC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
BstZI	CGGCCG	1 cut(s)	276
Bsu36I	CCTNAGG	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	99
BsuRI	GGCC	6 cut(s)	216, 278, 300, 471, 519, 794
BtgZI	GCGATG	1 cut(s)	4
BtsCI	GGATG	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	3 cut(s)	276, 280, 469
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	1 cut(s)	596
Cfr10I	RCCGGY	2 cut(s)	274, 278
Cfr13I	GGNCC	3 cut(s)	215, 407, 546
Csp6I	GTAC	4 cut(s)	59, 135, 251, 381
CviAII	CATG	2 cut(s)	302, 661
CviQI	GTAC	4 cut(s)	59, 135, 251, 381
DdeI	CTNAG	7 cut(s)	9, 173, 326, 411, 564, 772, 812
DpnI	GATC	3 cut(s)	127, 200, 603
DpnII	GATC	3 cut(s)	125, 198, 601
DraI	TTTAAA	1 cut(s)	756
EaeI	YGGCCR	2 cut(s)	276, 298
EagI	CGGCCG	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
EclXI	CGGCCG	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	597
Eco31I	GGTCTC	1 cut(s)	682
Eco47I	GGWCC	2 cut(s)	407, 546
Eco52I	CGGCCG	1 cut(s)	276
Eco57I	CTGAAG	1 cut(s)	665
Eco81I	CCTNAGG	1 cut(s)	564
EcoO109I	RGGNCCY	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	2 cut(s)	305, 664
FaiI	YATR	8 cut(s)	161, 212, 303, 405, 623, 662, 671, 791
FatI	CATG	2 cut(s)	301, 660
Fnu4HI	GCNGC	1 cut(s)	272
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	272
FspBI	CTAG	3 cut(s)	543, 551, 591
GlaI	GCGC	1 cut(s)	595
GluI	GCNGC	1 cut(s)	272
HaeII	RGCGCY	1 cut(s)	597
HaeIII	GGCC	6 cut(s)	216, 278, 300, 471, 519, 794
HapII	CCGG	3 cut(s)	275, 279, 334
HhaI	GCGC	1 cut(s)	596
Hin1II	CATG	2 cut(s)	305, 664
Hin6I	GCGC	1 cut(s)	594
HinP1I	GCGC	1 cut(s)	594
HinfI	GANTC	3 cut(s)	166, 207, 476
HpaII	CCGG	3 cut(s)	275, 279, 334
HphI	GGTGA	2 cut(s)	552, 749
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	8 cut(s)	105, 117, 130, 206, 248, 347, 505, 775
Hpy188III	TCNNGA	3 cut(s)	334, 700, 806
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	334, 371, 620
HpyCH4III	ACNGT	2 cut(s)	286, 385
HpyCH4IV	ACGT	2 cut(s)	93, 396
HpyCH4V	TGCA	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 29, 222, 358
HpyF3I	CTNAG	7 cut(s)	9, 173, 326, 411, 564, 772, 812
HpySE526I	ACGT	2 cut(s)	93, 396
Hsp92II	CATG	2 cut(s)	305, 664
HspAI	GCGC	1 cut(s)	594
Kpn2I	TCCGGA	1 cut(s)	333
KroI	GCCGGC	2 cut(s)	274, 278
KroNI	GCCGGC	2 cut(s)	276, 280
Kzo9I	GATC	3 cut(s)	125, 198, 601
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	2 cut(s)	152, 268
LweI	GCATC	1 cut(s)	696
MaeI	CTAG	3 cut(s)	543, 551, 591
MaeII	ACGT	2 cut(s)	93, 396
MalI	GATC	3 cut(s)	127, 200, 603
MboI	GATC	3 cut(s)	125, 198, 601
MboII	GAAGA	9 cut(s)	56, 59, 62, 135, 280, 346, 436, 658, 661
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	2 cut(s)	556, 705
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	2 cut(s)	184, 325
MroI	TCCGGA	1 cut(s)	333
MroNI	GCCGGC	2 cut(s)	274, 278
MseI	TTAA	3 cut(s)	309, 755, 820
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	3 cut(s)	275, 279, 334
Mva1269I	GAATGC	1 cut(s)	354
MwoI	GCNNNNNNNGC	4 cut(s)	20, 29, 222, 358
NaeI	GCCGGC	2 cut(s)	276, 280
NdeII	GATC	3 cut(s)	125, 198, 601
NgoMIV	GCCGGC	2 cut(s)	274, 278
NlaIII	CATG	2 cut(s)	305, 664
NlaIV	GGNNCC	3 cut(s)	270, 548, 603
PciSI	GCTCTTC	1 cut(s)	359
PctI	GAATGC	1 cut(s)	354
PdiI	GCCGGC	2 cut(s)	276, 280
PfeI	GAWTC	2 cut(s)	166, 207
PkrI	GCNGC	1 cut(s)	273
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
PpuMI	RGGWCCY	1 cut(s)	546
Psp1406I	AACGTT	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	546
PspN4I	GGNNCC	3 cut(s)	270, 548, 603
PspPI	GGNCC	3 cut(s)	215, 407, 546
PspPPI	RGGWCCY	1 cut(s)	546
PsrI	GAACNNNNNNTAC	2 cut(s)	484, 516
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	601
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	4 cut(s)	60, 136, 252, 382
RsaNI	GTAC	4 cut(s)	59, 135, 251, 381
SapI	GCTCTTC	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	309, 755, 820
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	3 cut(s)	125, 198, 601
Sau96I	GGNCC	3 cut(s)	215, 407, 546
ScaI	AGTACT	2 cut(s)	60, 252
SchI	GAGTC	1 cut(s)	470
SduI	GDGCHC	1 cut(s)	621
SfaNI	GCATC	1 cut(s)	696
SfcI	CTRYAG	2 cut(s)	384, 513
SinI	GGWCC	2 cut(s)	407, 546
SmlI	CTYRAG	1 cut(s)	796
SmoI	CTYRAG	1 cut(s)	796
Sse9I	AATT	2 cut(s)	556, 705
SsiI	CCGC	2 cut(s)	259, 272
SspMI	CTAG	3 cut(s)	543, 551, 591
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	2 cut(s)	286, 385
TaiI	ACGT	2 cut(s)	96, 399
TaqI	TCGA	1 cut(s)	318
TasI	AATT	2 cut(s)	556, 705
TatI	WGTACW	3 cut(s)	58, 134, 250
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	2 cut(s)	166, 207
Tru1I	TTAA	3 cut(s)	309, 755, 820
Tru9I	TTAA	3 cut(s)	309, 755, 820
TscAI	CASTG	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	2 cut(s)	407, 546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	787
XspI	CTAG	3 cut(s)	543, 551, 591
ZrmI	AGTACT	2 cut(s)	60, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.