RchiOBHm_Chr4g0398581

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014429
Physical Location & Seq
Forward (+)
15138622 .. 15141335
2714 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37075

Sequence Viewer

Length: 822 bp
ATGACTTCTCAGGCACACATCACTCTTTCAGCAGAGGAGAATGAAGAAGAAGAAGCAGTACTGGTAATCAATGATGGAGAAGCTGACGGCAACGTGAAGTTTCGGATACGAAATCTGACCAGAAGATCAGAGAGGACAGGAGGAGGAGGAGGAGCTATCATACTGAATGAGCTGAGCGTGGACATCCCAAAAGGAGTGATCGTCGGAATCATAGGCCCAAGTGGCAGCGGCAAATCCACGCTTCTCCGAGCACTCAACCGCCTCTGGGAGCCGCCTGCCGGCACTGTCTTCTTGGACGGCCATGATATTAAAGAACTCGATGTTCTCAGTCTCCGGAGGAAGGTCGGAATGCTCTTCCAGCTTCCTGTTCTTTTTGAAGGTACTGTTGCAGACAACGTTCGTTATGGTCCTCAGTTGAGTGGGAAGAAGCTGACTGATCAAGATGTTCATAAGCTACTGACCCTTGCAGGCCTTGATTCATCTTTTTTCAGTAAAACAGGTTCTGAAATATCTGTAGGCCAAGCCCAAAGAGTTGCACTTGCTAGGACCCTAGCCAATTCACCTGAGGTTTTGCTGTTAGACGAGCCTACTAGCGCCTTGGATCCAATATCAACAGAGCACATAGAAGGTGTTTTAGAAAAGCTGAAGAAGAAACGGGGCATGACAATCATAATGGTCTCACACAGCATCAAACAAATCCAGAGAATTGCTGATGTAGTGTGTCTCCTTGTGAATGGTGAGGTTGTTGAAGTTTTAACACCAGATAAACTCTCAGAAGCCAAGCACCCTATGGCCTTGAGGTTTCTTGAACTCAGCTCTTAA

Protein Analysis

273

Amino Acids

29.56

Weight (kDa)

5.76

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 55 - 198 1.5e-33 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014429)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67940
fragaria_vesca FvH4_4g06671 FvH4_4g06671
malus_domestica MD13G1237100.v1.1 MD16G1242500.v1.1
prunus_persica Prupe.1G069500_v2.0.a1
pyrus_communis pycom16g20320 pycom16g20330
rosa_chinensis RchiOBHm_Chr4g0398581
rosa_laevigata RLG00000009342
rosa_roxburghii Rroxscaffold_5G00343550
rosa_rugosa Rorug04G0009500 Rorug04G0009600.1
rosa_samantha Rh4AG087500 Rh4BG084100 Rh4CG095700 Rh4DG079000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 333
AciI CCGC 3 cut(s) 228, 259, 272
AclI AACGTT 1 cut(s) 396
AclWI GGATC 2 cut(s) 596, 609
AcoI YGGCCR 1 cut(s) 298
AcuI CTGAAG 1 cut(s) 665
AfaI GTAC 2 cut(s) 60, 382
AfiI CCNNNNNNNGG 3 cut(s) 265, 278, 340
AgsI TTSAA 3 cut(s) 377, 749, 809
AluBI AGCT 8 cut(s) 83, 155, 172, 361, 430, 454, 643, 816
AluI AGCT 8 cut(s) 83, 155, 172, 361, 430, 454, 643, 816
Alw21I GWGCWC 2 cut(s) 253, 621
Alw26I GTCTC 3 cut(s) 335, 682, 728
AlwI GGATC 2 cut(s) 596, 609
AlwNI CAGNNNCTG 1 cut(s) 503
Aor13HI TCCGGA 1 cut(s) 333
AoxI GGCC 5 cut(s) 214, 298, 469, 517, 792
ApeKI GCWGC 1 cut(s) 225
AspLEI GCGC 1 cut(s) 596
AspS9I GGNCC 3 cut(s) 215, 407, 546
AsuHPI GGTGA 2 cut(s) 552, 749
AvaII GGWCC 2 cut(s) 407, 546
AxyI CCTNAGG 1 cut(s) 564
BamHI GGATCC 1 cut(s) 601
BarI GAAGNNNNNNTAC 2 cut(s) 42, 74
BbsI GAAGAC 1 cut(s) 280
Bbv12I GWGCWC 2 cut(s) 253, 621
BbvI GCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 68
BceAI ACGGC 2 cut(s) 103, 313
BciVI GTATCC 1 cut(s) 99
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 3 cut(s) 335, 682, 728
BfaI CTAG 3 cut(s) 543, 551, 591
BfmI CTRYAG 1 cut(s) 513
BfoI RGCGCY 1 cut(s) 597
BfuI GTATCC 1 cut(s) 99
BglI GCCNNNNNGGC 1 cut(s) 222
BisI GCNGC 3 cut(s) 226, 229, 272
BlpI GCTNAGC 1 cut(s) 173
BlsI GCNGC 3 cut(s) 227, 230, 273
BmcAI AGTACT 1 cut(s) 60
Bme18I GGWCC 2 cut(s) 407, 546
BmgT120I GGNCC 3 cut(s) 215, 407, 546
BmiI GGNNCC 3 cut(s) 270, 548, 603
BmsI GCATC 1 cut(s) 696
BpiI GAAGAC 1 cut(s) 280
Bpu1102I GCTNAGC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 817
BsaI GGTCTC 1 cut(s) 682
BsaJI CCNNGG 1 cut(s) 597
BsaWI WCCGGW 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 3 cut(s) 265, 278, 340
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 66
Bse21I CCTNAGG 1 cut(s) 564
BseAI TCCGGA 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 597
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 3 cut(s) 265, 278, 340
BseMII CTCAG 6 cut(s) 23, 164, 340, 425, 555, 786
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 5 cut(s) 50, 156, 159, 162, 165
BseXI GCAGC 1 cut(s) 237
BshFI GGCC 5 cut(s) 216, 300, 471, 519, 794
BsiHKAI GWGCWC 2 cut(s) 253, 621
BsiSI CCGG 2 cut(s) 279, 334
BslI CCNNNNNNNGG 3 cut(s) 265, 278, 340
BsmAI GTCTC 3 cut(s) 335, 682, 728
BsmI GAATGC 1 cut(s) 354
BsnI GGCC 5 cut(s) 216, 300, 471, 519, 794
Bso31I GGTCTC 1 cut(s) 682
Bsp1286I GDGCHC 2 cut(s) 253, 621
Bsp13I TCCGGA 1 cut(s) 333
Bsp143I GATC 4 cut(s) 125, 198, 436, 601
Bsp1720I GCTNAGC 1 cut(s) 173
BspACI CCGC 3 cut(s) 228, 259, 272
BspANI GGCC 5 cut(s) 216, 300, 471, 519, 794
BspCNI CTCAG 6 cut(s) 22, 165, 339, 424, 556, 785
BspEI TCCGGA 1 cut(s) 333
BspLI GGNNCC 3 cut(s) 270, 548, 603
BspPI GGATC 2 cut(s) 596, 609
BspQI GCTCTTC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 682
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 597
BssMI GATC 4 cut(s) 125, 198, 436, 601
BssT1I CCWWGG 1 cut(s) 597
Bst4CI ACNGT 2 cut(s) 286, 385
Bst6I CTCTTC 1 cut(s) 359
BstC8I GCNNGC 3 cut(s) 276, 280, 469
BstDEI CTNAG 7 cut(s) 9, 173, 326, 411, 564, 772, 812
BstF5I GGATG 1 cut(s) 183
BstH2I RGCGCY 1 cut(s) 597
BstHHI GCGC 1 cut(s) 596
BstKTI GATC 4 cut(s) 128, 201, 439, 604
BstMAI GTCTC 3 cut(s) 335, 682, 728
BstMBI GATC 4 cut(s) 125, 198, 436, 601
BstMWI GCNNNNNNNGC 2 cut(s) 222, 358
BstSFI CTRYAG 1 cut(s) 513
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
Bsu36I CCTNAGG 1 cut(s) 564
BsuI GTATCC 1 cut(s) 99
BsuRI GGCC 5 cut(s) 216, 300, 471, 519, 794
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 3 cut(s) 276, 280, 469
CaiI CAGNNNCTG 1 cut(s) 503
CfoI GCGC 1 cut(s) 596
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 3 cut(s) 215, 407, 546
Csp6I GTAC 2 cut(s) 59, 381
CviAII CATG 2 cut(s) 302, 661
CviQI GTAC 2 cut(s) 59, 381
DdeI CTNAG 7 cut(s) 9, 173, 326, 411, 564, 772, 812
DpnI GATC 4 cut(s) 127, 200, 438, 603
DpnII GATC 4 cut(s) 125, 198, 436, 601
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 359
EarI CTCTTC 1 cut(s) 359
Eco130I CCWWGG 1 cut(s) 597
Eco147I AGGCCT 1 cut(s) 471
Eco31I GGTCTC 1 cut(s) 682
Eco47I GGWCC 2 cut(s) 407, 546
Eco57I CTGAAG 1 cut(s) 665
Eco81I CCTNAGG 1 cut(s) 564
EcoO109I RGGNCCY 1 cut(s) 546
EcoT14I CCWWGG 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 597
FaeI CATG 2 cut(s) 305, 664
FaiI YATR 9 cut(s) 161, 212, 303, 405, 450, 623, 662, 671, 791
FatI CATG 2 cut(s) 301, 660
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 3 cut(s) 226, 229, 272
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 3 cut(s) 226, 229, 272
FspBI CTAG 3 cut(s) 543, 551, 591
GlaI GCGC 1 cut(s) 595
GluI GCNGC 3 cut(s) 226, 229, 272
HaeII RGCGCY 1 cut(s) 597
HaeIII GGCC 5 cut(s) 216, 300, 471, 519, 794
HapII CCGG 2 cut(s) 279, 334
HhaI GCGC 1 cut(s) 596
Hin1II CATG 2 cut(s) 305, 664
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HinfI GANTC 2 cut(s) 207, 476
HpaII CCGG 2 cut(s) 279, 334
HphI GGTGA 2 cut(s) 552, 749
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 8 cut(s) 105, 117, 130, 206, 248, 347, 505, 775
Hpy188III TCNNGA 4 cut(s) 334, 440, 700, 806
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 3 cut(s) 334, 371, 620
HpyCH4III ACNGT 2 cut(s) 286, 385
HpyCH4IV ACGT 2 cut(s) 93, 396
HpyCH4V TGCA 3 cut(s) 389, 467, 536
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 358
HpyF3I CTNAG 7 cut(s) 9, 173, 326, 411, 564, 772, 812
HpySE526I ACGT 2 cut(s) 93, 396
Hsp92II CATG 2 cut(s) 305, 664
HspAI GCGC 1 cut(s) 594
Kpn2I TCCGGA 1 cut(s) 333
KroI GCCGGC 1 cut(s) 278
KroNI GCCGGC 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 4 cut(s) 125, 198, 436, 601
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 2 cut(s) 152, 268
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 1 cut(s) 696
MaeI CTAG 3 cut(s) 543, 551, 591
MaeII ACGT 2 cut(s) 93, 396
MalI GATC 4 cut(s) 127, 200, 438, 603
MboI GATC 4 cut(s) 125, 198, 436, 601
MboII GAAGA 9 cut(s) 56, 59, 62, 135, 280, 346, 436, 658, 661
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 2 cut(s) 253, 621
MluCI AATT 2 cut(s) 556, 705
MmeI TCCRAC 2 cut(s) 184, 325
MroI TCCGGA 1 cut(s) 333
MroNI GCCGGC 1 cut(s) 278
MseI TTAA 3 cut(s) 309, 755, 820
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 2 cut(s) 279, 334
Mva1269I GAATGC 1 cut(s) 354
MwoI GCNNNNNNNGC 2 cut(s) 222, 358
NaeI GCCGGC 1 cut(s) 280
NdeII GATC 4 cut(s) 125, 198, 436, 601
NgoMIV GCCGGC 1 cut(s) 278
NlaIII CATG 2 cut(s) 305, 664
NlaIV GGNNCC 3 cut(s) 270, 548, 603
PceI AGGCCT 1 cut(s) 471
PciSI GCTCTTC 1 cut(s) 359
PctI GAATGC 1 cut(s) 354
PdiI GCCGGC 1 cut(s) 280
PfeI GAWTC 2 cut(s) 207, 476
PkrI GCNGC 3 cut(s) 227, 230, 273
PpuMI RGGWCCY 1 cut(s) 546
Psp1406I AACGTT 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 546
PspN4I GGNNCC 3 cut(s) 270, 548, 603
PspPI GGNCC 3 cut(s) 215, 407, 546
PspPPI RGGWCCY 1 cut(s) 546
PsrI GAACNNNNNNTAC 2 cut(s) 484, 516
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 1 cut(s) 601
RsaI GTAC 2 cut(s) 60, 382
RsaNI GTAC 2 cut(s) 59, 381
SapI GCTCTTC 1 cut(s) 359
SaqAI TTAA 3 cut(s) 309, 755, 820
SatI GCNGC 3 cut(s) 226, 229, 272
Sau3AI GATC 4 cut(s) 125, 198, 436, 601
Sau96I GGNCC 3 cut(s) 215, 407, 546
ScaI AGTACT 1 cut(s) 60
SduI GDGCHC 2 cut(s) 253, 621
SfaNI GCATC 1 cut(s) 696
SfcI CTRYAG 1 cut(s) 513
SinI GGWCC 2 cut(s) 407, 546
SmlI CTYRAG 1 cut(s) 796
SmoI CTYRAG 1 cut(s) 796
Sse9I AATT 2 cut(s) 556, 705
SseBI AGGCCT 1 cut(s) 471
SsiI CCGC 3 cut(s) 228, 259, 272
SspMI CTAG 3 cut(s) 543, 551, 591
StuI AGGCCT 1 cut(s) 471
StyI CCWWGG 1 cut(s) 597
TaaI ACNGT 2 cut(s) 286, 385
TaiI ACGT 2 cut(s) 96, 399
TaqI TCGA 1 cut(s) 318
TasI AATT 2 cut(s) 556, 705
TatI WGTACW 1 cut(s) 58
TauI GCSGC 2 cut(s) 231, 274
TfiI GAWTC 2 cut(s) 207, 476
Tru1I TTAA 3 cut(s) 309, 755, 820
Tru9I TTAA 3 cut(s) 309, 755, 820
TscAI CASTG 1 cut(s) 289
TseI GCWGC 1 cut(s) 225
TspDTI ATGAA 3 cut(s) 57, 437, 468
TspRI CASTG 1 cut(s) 289
VpaK11BI GGWCC 2 cut(s) 407, 546
XcmI CCANNNNNNNNNTGG 1 cut(s) 787
XspI CTAG 3 cut(s) 543, 551, 591
ZrmI AGTACT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.