Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014429

Physical Location & Seq

Genomic Coordinates Reverse (-)

1496185 .. 1497040

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0009500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGAGAAGATTGAGAGGGAAACCCAAGACTTCATGAACGTGGAATCCTTCTCTCAGCTGCCCTTTATCCGGCCGGCTCCTCCGGTCAACAAAGAAAAGGGCATTAGGCTCTTTGGCATCGAATTCGGGGCCGGCGTCGACACCAACCACGAGTCGGAATCGGTCGACAACAATGTGAGTGAGAACGGGAAAGAAGACGAGGGCAACAAGCACACCAACACCAACAACACAAACATAAGCAACAGCAACAGCGAAAATGGCAGCGAGAGCAGCCGCAGATTCGAGTGCCATTACTGCTGCAGAAACTTCCCGACCAGCCAAGCCCTCGGCGGCCACCAAAACGCACACAAAAGAGAGCGGCAGCACGCCAAACGCGAGCATCTCCAGTCGGCTATGGTGCATGGAGGGCTGGTCTCCCACGACGCTGCACACGTGTACGGCTTGATGAATTACAGCCGCCTTGGCTCTGCTCATCATCACCATCATCATCCCACCTATCCGTCCTGGAACACTAACTACAGTTCTAGTACTACTACTACCAGTCCTAGGTTCTATGGAAGCCCCGGTGGATCATACGGCTCTCAATCTGCTCCCATAAACGGGAGTCCTTTGGGCTTGTGGCGGATCCCATCTGCTAACCCTAGTTTCAATCGTGACCGTTCGTTGATGAACCCGCTGGTGACGCCGTTGTTCGCCGGAGAAGAACTGAAGCCGGTTGTTGTTGGTGGGTCTGGTAATTCTCAAAGCCGGTACATCAGTACATGTATGAATCGAGTGTGCAGCAAGACCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0010035 GO:0010038 GO:0010044 GO:0012506 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0031090 GO:0031982 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0090481 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

264

Amino Acids

29.2

Weight (kDa)

7.79

Isoelectric Point (pI)

55.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67940
fragaria_vesca	FvH4_4g06671 FvH4_4g06671
malus_domestica	MD13G1237100.v1.1 MD16G1242500.v1.1
prunus_persica	Prupe.1G069500_v2.0.a1
pyrus_communis	pycom16g20320 pycom16g20330
rosa_chinensis	RchiOBHm_Chr4g0398581
rosa_laevigata	RLG00000009342
rosa_roxburghii	Rroxscaffold_5G00343550
rosa_rugosa	Rorug04G0009500 Rorug04G0009600.1
rosa_samantha	Rh4AG087500 Rh4BG084100 Rh4CG095700 Rh4DG079000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	358
AccI	GTMKAC	2 cut(s)	138, 165
AccII	CGCG	1 cut(s)	375
AciI	CCGC	6 cut(s)	274, 330, 358, 457, 622, 674
AclWI	GGATC	3 cut(s)	577, 619, 632
AcoI	YGGCCR	2 cut(s)	71, 331
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	728
AcvI	CACGTG	1 cut(s)	433
AcyI	GRCGYC	2 cut(s)	135, 683
AfaI	GTAC	4 cut(s)	437, 529, 752, 760
AfiI	CCNNNNNNNGG	5 cut(s)	69, 154, 546, 599, 600
AflIII	ACRYGT	3 cut(s)	430, 432, 761
AgsI	TTSAA	1 cut(s)	649
AjnI	CCWGG	1 cut(s)	503
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	3 cut(s)	577, 619, 632
AoxI	GGCC	3 cut(s)	71, 129, 331
ApeKI	GCWGC	7 cut(s)	58, 261, 270, 297, 361, 425, 780
ApoI	RAATTY	1 cut(s)	122
AspA2I	CCTAGG	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	564
AsuHPI	GGTGA	2 cut(s)	470, 691
AvrII	CCTAGG	1 cut(s)	545
BaeI	ACNNNNGTAYC	2 cut(s)	742, 775
BamHI	GGATCC	1 cut(s)	624
BauI	CACGAG	1 cut(s)	149
BbrPI	CACGTG	1 cut(s)	433
BbsI	GAAGAC	1 cut(s)	201
BbvI	GCAGC	6 cut(s)	45, 273, 282, 284, 373, 412
BccI	CCATC	2 cut(s)	489, 637
BceAI	ACGGC	3 cut(s)	454, 592, 670
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	3 cut(s)	525, 546, 642
BfmI	CTRYAG	2 cut(s)	298, 517
BglI	GCCNNNNNGGC	1 cut(s)	462
BlnI	CCTAGG	1 cut(s)	545
BmcAI	AGTACT	1 cut(s)	529
Bme1390I	CCNGG	2 cut(s)	505, 564
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	3 cut(s)	78, 130, 626
BmrFI	CCNGG	2 cut(s)	505, 564
BmsI	GCATC	2 cut(s)	126, 388
BpiI	GAAGAC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	564
BsaAI	YACGTR	1 cut(s)	433
BsaHI	GRCGYC	2 cut(s)	135, 683
BsaI	GGTCTC	1 cut(s)	418
BsaJI	CCNNGG	4 cut(s)	325, 460, 545, 562
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 154, 546, 599, 600
Bse118I	RCCGGY	4 cut(s)	73, 131, 712, 747
Bse1I	ACTGG	2 cut(s)	385, 540
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	4 cut(s)	325, 460, 545, 562
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	5 cut(s)	69, 154, 546, 599, 600
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	2 cut(s)	385, 540
BseRI	GAGGAG	1 cut(s)	69
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	6 cut(s)	45, 273, 282, 284, 373, 412
BsgI	GTGCAG	1 cut(s)	411
Bsh1236I	CGCG	1 cut(s)	375
Bsh1285I	CGRYCG	2 cut(s)	74, 165
BshFI	GGCC	3 cut(s)	73, 131, 333
BsiEI	CGRYCG	2 cut(s)	74, 165
BsiSI	CCGG	8 cut(s)	70, 74, 83, 132, 564, 696, 713, 748
BslI	CCNNNNNNNGG	5 cut(s)	69, 154, 546, 599, 600
BsmAI	GTCTC	1 cut(s)	418
BsnI	GGCC	3 cut(s)	73, 131, 333
Bso31I	GGTCTC	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	569, 624
BspACI	CCGC	6 cut(s)	274, 330, 358, 457, 622, 674
BspANI	GGCC	3 cut(s)	73, 131, 333
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	375
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	3 cut(s)	78, 130, 626
BspMAI	CTGCAG	1 cut(s)	302
BspPI	GGATC	3 cut(s)	577, 619, 632
BspTNI	GGTCTC	1 cut(s)	418
BsrBI	CCGCTC	1 cut(s)	358
BsrFI	RCCGGY	4 cut(s)	73, 131, 712, 747
BsrI	ACTGG	2 cut(s)	385, 540
BssAI	RCCGGY	4 cut(s)	73, 131, 712, 747
BssECI	CCNNGG	4 cut(s)	325, 460, 545, 562
BssMI	GATC	2 cut(s)	569, 624
BssNI	GRCGYC	2 cut(s)	135, 683
BssSI	CACGAG	1 cut(s)	149
BssT1I	CCWWGG	2 cut(s)	460, 545
Bst2BI	CACGAG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	2 cut(s)	521, 659
BstACI	GRCGYC	2 cut(s)	135, 683
BstBAI	YACGTR	1 cut(s)	433
BstC8I	GCNNGC	4 cut(s)	75, 133, 366, 377
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	487
BstFNI	CGCG	1 cut(s)	375
BstKTI	GATC	2 cut(s)	572, 627
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	2 cut(s)	569, 624
BstMCI	CGRYCG	2 cut(s)	74, 165
BstMWI	GCNNNNNNNGC	7 cut(s)	258, 267, 270, 294, 406, 462, 682
BstNI	CCWGG	1 cut(s)	505
BstNSI	RCATGY	1 cut(s)	765
BstSCI	CCNGG	2 cut(s)	503, 562
BstSFI	CTRYAG	2 cut(s)	298, 517
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	6 cut(s)	45, 273, 282, 284, 373, 412
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	624
BstYI	RGATCY	1 cut(s)	624
BstZI	CGGCCG	1 cut(s)	71
BsuRI	GGCC	3 cut(s)	73, 131, 333
BtsCI	GGATG	1 cut(s)	487
Cac8I	GCNNGC	4 cut(s)	75, 133, 366, 377
CciI	TCATGA	1 cut(s)	33
Cfr10I	RCCGGY	4 cut(s)	73, 131, 712, 747
Cfr13I	GGNCC	1 cut(s)	129
CseI	GACGC	3 cut(s)	124, 431, 691
Csp6I	GTAC	4 cut(s)	436, 528, 751, 759
CviAII	CATG	4 cut(s)	34, 401, 762, 790
CviQI	GTAC	4 cut(s)	436, 528, 751, 759
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	2 cut(s)	571, 626
DpnII	GATC	2 cut(s)	569, 624
EaeI	YGGCCR	2 cut(s)	71, 331
EagI	CGGCCG	1 cut(s)	71
EciI	GGCGGA	1 cut(s)	637
EclXI	CGGCCG	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	460, 545
Eco31I	GGTCTC	1 cut(s)	418
Eco52I	CGGCCG	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	728
Eco72I	CACGTG	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	503
EcoT14I	CCWWGG	2 cut(s)	460, 545
ErhI	CCWWGG	2 cut(s)	460, 545
FaeI	CATG	4 cut(s)	37, 404, 765, 793
FatI	CATG	4 cut(s)	33, 400, 761, 789
FauI	CCCGC	1 cut(s)	681
FblI	GTMKAC	2 cut(s)	138, 165
FokI	GGATG	1 cut(s)	474
FspBI	CTAG	3 cut(s)	525, 546, 642
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	3 cut(s)	73, 131, 333
HapII	CCGG	8 cut(s)	70, 74, 83, 132, 564, 696, 713, 748
HgaI	GACGC	3 cut(s)	124, 431, 691
Hin1I	GRCGYC	2 cut(s)	135, 683
Hin1II	CATG	4 cut(s)	37, 404, 765, 793
HincII	GTYRAC	3 cut(s)	88, 139, 166
HindII	GTYRAC	3 cut(s)	88, 139, 166
HinfI	GANTC	6 cut(s)	44, 152, 158, 279, 604, 769
HpaII	CCGG	8 cut(s)	70, 74, 83, 132, 564, 696, 713, 748
HphI	GGTGA	2 cut(s)	470, 691
Hpy166II	GTNNAC	4 cut(s)	88, 139, 166, 436
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	3 cut(s)	34, 310, 653
Hpy8I	GTNNAC	4 cut(s)	88, 139, 166, 436
Hpy99I	CGWCG	2 cut(s)	140, 425
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	521, 659
HpyCH4IV	ACGT	2 cut(s)	39, 432
HpyCH4V	TGCA	4 cut(s)	300, 400, 428, 780
HpyF10VI	GCNNNNNNNGC	7 cut(s)	258, 267, 270, 294, 406, 462, 682
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	2 cut(s)	39, 432
Hsp92I	GRCGYC	2 cut(s)	135, 683
Hsp92II	CATG	4 cut(s)	37, 404, 765, 793
KroI	GCCGGC	2 cut(s)	73, 131
KroNI	GCCGGC	2 cut(s)	75, 133
Kzo9I	GATC	2 cut(s)	569, 624
LmnI	GCTCC	2 cut(s)	82, 595
Lsp1109I	GCAGC	6 cut(s)	45, 273, 282, 284, 373, 412
LweI	GCATC	2 cut(s)	126, 388
MaeI	CTAG	3 cut(s)	525, 546, 642
MaeII	ACGT	2 cut(s)	39, 432
MaeIII	GTNAC	2 cut(s)	653, 679
MalI	GATC	2 cut(s)	571, 626
MbiI	CCGCTC	1 cut(s)	358
MboI	GATC	2 cut(s)	569, 624
MboII	GAAGA	3 cut(s)	19, 206, 713
MflI	RGATCY	1 cut(s)	624
MluCI	AATT	3 cut(s)	122, 448, 736
MlyI	GAGTC	2 cut(s)	161, 613
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	9, 90, 193, 335, 398
MroNI	GCCGGC	2 cut(s)	73, 131
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	2 cut(s)	58, 676
MspI	CCGG	8 cut(s)	70, 74, 83, 132, 564, 696, 713, 748
MspR9I	CCNGG	2 cut(s)	505, 564
MvaI	CCWGG	1 cut(s)	505
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	7 cut(s)	258, 267, 270, 294, 406, 462, 682
NaeI	GCCGGC	2 cut(s)	75, 133
NciI	CCSGG	1 cut(s)	564
NdeII	GATC	2 cut(s)	569, 624
NgoMIV	GCCGGC	2 cut(s)	73, 131
NlaIII	CATG	4 cut(s)	37, 404, 765, 793
NlaIV	GGNNCC	3 cut(s)	78, 130, 626
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	2 cut(s)	653, 679
NspI	RCATGY	1 cut(s)	765
PagI	TCATGA	1 cut(s)	33
PciI	ACATGT	1 cut(s)	761
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 372, 429
PdiI	GCCGGC	2 cut(s)	75, 133
PfeI	GAWTC	4 cut(s)	44, 158, 279, 769
PfoI	TCCNGGA	1 cut(s)	503
PleI	GAGTC	2 cut(s)	160, 612
PmaCI	CACGTG	1 cut(s)	433
PmlI	CACGTG	1 cut(s)	433
PpsI	GAGTC	2 cut(s)	160, 612
Ppu21I	YACGTR	1 cut(s)	433
PscI	ACATGT	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	503
PspCI	CACGTG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	3 cut(s)	78, 130, 626
PspPI	GGNCC	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	500, 532
PstI	CTGCAG	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	624
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	4 cut(s)	437, 529, 752, 760
RsaNI	GTAC	4 cut(s)	436, 528, 751, 759
RseI	CAYNNNNRTG	1 cut(s)	38
SalI	GTCGAC	2 cut(s)	137, 164
Sau3AI	GATC	2 cut(s)	569, 624
Sau96I	GGNCC	1 cut(s)	129
ScaI	AGTACT	1 cut(s)	529
SchI	GAGTC	2 cut(s)	161, 613
ScrFI	CCNGG	2 cut(s)	505, 564
SetI	ASST	5 cut(s)	42, 60, 435, 497, 551
SfaNI	GCATC	2 cut(s)	126, 388
SfcI	CTRYAG	2 cut(s)	298, 517
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	3 cut(s)	122, 448, 736
SsiI	CCGC	6 cut(s)	274, 330, 358, 457, 622, 674
SspMI	CTAG	3 cut(s)	525, 546, 642
StyD4I	CCNGG	2 cut(s)	503, 562
StyI	CCWWGG	2 cut(s)	460, 545
TaaI	ACNGT	2 cut(s)	521, 659
TaiI	ACGT	2 cut(s)	42, 435
TaqI	TCGA	5 cut(s)	120, 138, 165, 282, 772
TaqII	GACCGA	1 cut(s)	151
TasI	AATT	3 cut(s)	122, 448, 736
TatI	WGTACW	2 cut(s)	527, 758
TauI	GCSGC	4 cut(s)	276, 333, 361, 459
TfiI	GAWTC	4 cut(s)	44, 158, 279, 769
TseFI	GTSAC	2 cut(s)	653, 679
TseI	GCWGC	7 cut(s)	58, 261, 270, 297, 361, 425, 780
Tsp45I	GTSAC	2 cut(s)	653, 679
TspDTI	ATGAA	5 cut(s)	22, 50, 461, 683, 782
TspGWI	ACGGA	1 cut(s)	489
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	1 cut(s)	765
XmaJI	CCTAGG	1 cut(s)	545
XmiI	GTMKAC	2 cut(s)	138, 165
XspI	CTAG	3 cut(s)	525, 546, 642
ZrmI	AGTACT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.