Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0014429

Physical Location & Seq

Genomic Coordinates Forward (+)

24128723 .. 24132090

Gene Structure 3368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1237100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTCTTCACCTCTACCCGCTCAGCCACATCCCTTCTTTGCTGATGGGGTTCAAGCAGCTACAGAGCACCTACTCACTGTGGACAATGGAGAAGCCCATGGCGACGTGAAATTCCGGATACGAAATCTGGCCAAGAAATCAGACACCACAGGAGCTTCCATACTCAATGGGTTGACCTTGGACATACCTAAGGGCGTCATCATGGGGGTCATTGGCCCCAGCGGCAGCGGCAAGTCCACGCTGCTCCGAGCTCTCAACCGCCTCTGGGAGCCCCCGTCCGGGACTGTCTTCTTGGACGGCCATGATATTCTGGACACGGACGTCCTCAGCCTCCGCCGCAAGGTCGGCATGCTCTTCCAGCTTCCTGTTCTTTTTGAAGGCACAGTTGCAGACAATATACGTTATGGTCCTCAACTGAAGGGGAGGAAGCTGAGTGACGAGGATGTTCACAAGTTGCTAAACCTTGTAGACCTTGATTCATTCTTTGCCACCAAGACTGGTTCTGAAATGTCTGTGGGTCAATCCCAAAGAGTGGCACTTGCTAGGACCCTAGCCAATTCTCCTGAGGTTTTGCTGCTGGATGAGCCGACAAGTGCGTTGGATCCAATATCTACAGAGCACATAGAAGGTGCTTTAGTGAAGCTGAAGCAGAAACAGGGGATGACCATTGTAATGGTCTCTCACAGCATCAAACAAATCCAGAGGATTGCTGACATTGTTTGCCTCCTTGTGGATGGGGAGATTGTTGAAGTTCTCAAACCAGACCAACTCTCTCAAGCCAACCATCCCATGGCACTACGGTTCCTTCAGCTCAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0010035 GO:0010038 GO:0010044 GO:0012506 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0031090 GO:0031982 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0090481 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

274

Amino Acids

29.58

Weight (kDa)

6.06

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	55 - 198	6.1e-34	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67940
fragaria_vesca	FvH4_4g06671 FvH4_4g06671
malus_domestica	MD13G1237100.v1.1 MD16G1242500.v1.1
prunus_persica	Prupe.1G069500_v2.0.a1
pyrus_communis	pycom16g20320 pycom16g20330
rosa_chinensis	RchiOBHm_Chr4g0398581
rosa_laevigata	RLG00000009342
rosa_roxburghii	Rroxscaffold_5G00343550
rosa_rugosa	Rorug04G0009500 Rorug04G0009600.1
rosa_samantha	Rh4AG087500 Rh4BG084100 Rh4CG095700 Rh4DG079000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AatII	GACGTC	1 cut(s)	324
AccB7I	CCANNNNNTGG	2 cut(s)	532, 790
AccBSI	CCGCTC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	468
AccIII	TCCGGA	1 cut(s)	114
AciI	CCGC	6 cut(s)	18, 222, 228, 259, 334, 337
AclWI	GGATC	2 cut(s)	596, 609
AcoI	YGGCCR	2 cut(s)	129, 298
AcsI	RAATTY	1 cut(s)	110
AcuI	CTGAAG	3 cut(s)	437, 665, 791
AcyI	GRCGYC	2 cut(s)	195, 321
AfiI	CCNNNNNNNGG	7 cut(s)	265, 278, 279, 340, 532, 730, 790
AgsI	TTSAA	3 cut(s)	53, 377, 749
AjiI	CACGTC	1 cut(s)	106
AluBI	AGCT	8 cut(s)	59, 155, 251, 361, 430, 643, 811, 816
AluI	AGCT	8 cut(s)	59, 155, 251, 361, 430, 643, 811, 816
Alw21I	GWGCWC	3 cut(s)	69, 253, 621
Alw26I	GTCTC	1 cut(s)	682
AlwI	GGATC	2 cut(s)	596, 609
Aor13HI	TCCGGA	1 cut(s)	114
AoxI	GGCC	3 cut(s)	129, 214, 298
ApeKI	GCWGC	4 cut(s)	56, 225, 241, 574
ApoI	RAATTY	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	215, 407, 546
AsuC2I	CCSGG	1 cut(s)	280
AvaII	GGWCC	2 cut(s)	407, 546
AxyI	CCTNAGG	2 cut(s)	189, 564
BalI	TGGCCA	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	601
BanII	GRGCYC	2 cut(s)	253, 273
BbsI	GAAGAC	1 cut(s)	280
Bbv12I	GWGCWC	3 cut(s)	69, 253, 621
BbvCI	CCTCAGC	1 cut(s)	326
BbvI	GCAGC	4 cut(s)	68, 228, 237, 561
BccI	CCATC	3 cut(s)	38, 728, 792
BceAI	ACGGC	1 cut(s)	313
BciVI	GTATCC	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	682
BfaI	CTAG	2 cut(s)	543, 551
BfmI	CTRYAG	2 cut(s)	60, 612
BfuI	GTATCC	1 cut(s)	111
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	7 cut(s)	57, 223, 226, 229, 242, 337, 575
BlpI	GCTNAGC	2 cut(s)	21, 812
BlsI	GCNGC	7 cut(s)	58, 224, 227, 230, 243, 338, 576
Bme1390I	CCNGG	1 cut(s)	280
Bme18I	GGWCC	2 cut(s)	407, 546
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	3 cut(s)	215, 407, 546
BmiI	GGNNCC	5 cut(s)	217, 270, 548, 603, 803
BmrFI	CCNGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	696
BpiI	GAAGAC	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	326
Bpu1102I	GCTNAGC	2 cut(s)	21, 812
BpuEI	CTTGAG	1 cut(s)	759
BpuMI	CCSGG	1 cut(s)	280
BsaHI	GRCGYC	2 cut(s)	195, 321
BsaI	GGTCTC	1 cut(s)	682
BsaJI	CCNNGG	3 cut(s)	97, 177, 789
BsaWI	WCCGGW	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	7 cut(s)	265, 278, 279, 340, 532, 730, 790
Bse1I	ACTGG	1 cut(s)	502
Bse21I	CCTNAGG	2 cut(s)	189, 564
BseAI	TCCGGA	1 cut(s)	114
BseDI	CCNNGG	3 cut(s)	97, 177, 789
BseGI	GGATG	6 cut(s)	28, 448, 586, 666, 739, 784
BseLI	CCNNNNNNNGG	7 cut(s)	265, 278, 279, 340, 532, 730, 790
BseMII	CTCAG	4 cut(s)	35, 340, 422, 555
BseNI	ACTGG	1 cut(s)	502
BseXI	GCAGC	4 cut(s)	68, 228, 237, 561
BseYI	CCCAGC	1 cut(s)	218
BshFI	GGCC	3 cut(s)	131, 216, 300
BsiHKAI	GWGCWC	3 cut(s)	69, 253, 621
BsiSI	CCGG	2 cut(s)	115, 279
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	7 cut(s)	265, 278, 279, 340, 532, 730, 790
BsmAI	GTCTC	1 cut(s)	682
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	3 cut(s)	131, 216, 300
Bso31I	GGTCTC	1 cut(s)	682
Bsp1286I	GDGCHC	4 cut(s)	69, 253, 273, 621
Bsp13I	TCCGGA	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	601
Bsp1720I	GCTNAGC	2 cut(s)	21, 812
Bsp19I	CCATGG	2 cut(s)	97, 789
BspACI	CCGC	6 cut(s)	18, 222, 228, 259, 334, 337
BspANI	GGCC	3 cut(s)	131, 216, 300
BspCNI	CTCAG	4 cut(s)	34, 339, 423, 556
BspEI	TCCGGA	1 cut(s)	114
BspLI	GGNNCC	5 cut(s)	217, 270, 548, 603, 803
BspPI	GGATC	2 cut(s)	596, 609
BspQI	GCTCTTC	1 cut(s)	359
BspTNI	GGTCTC	1 cut(s)	682
BsrBI	CCGCTC	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	3 cut(s)	97, 177, 789
BssMI	GATC	1 cut(s)	601
BssNI	GRCGYC	2 cut(s)	195, 321
BssT1I	CCWWGG	3 cut(s)	97, 177, 789
Bst4CI	ACNGT	4 cut(s)	79, 286, 385, 801
Bst6I	CTCTTC	1 cut(s)	359
BstACI	GRCGYC	2 cut(s)	195, 321
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	6 cut(s)	21, 189, 326, 431, 564, 812
BstDSI	CCRYGG	2 cut(s)	97, 789
BstF5I	GGATG	6 cut(s)	28, 448, 586, 666, 739, 784
BstKTI	GATC	1 cut(s)	604
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	1 cut(s)	601
BstMWI	GCNNNNNNNGC	6 cut(s)	222, 228, 336, 345, 358, 583
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	278
BstSFI	CTRYAG	2 cut(s)	60, 612
BstV1I	GCAGC	4 cut(s)	68, 228, 237, 561
BstV2I	GAAGAC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	601
BstXI	CCANNNNNNTGG	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	601
Bsu36I	CCTNAGG	2 cut(s)	189, 564
BsuI	GTATCC	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	131, 216, 300
BtgI	CCRYGG	2 cut(s)	97, 789
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	6 cut(s)	28, 448, 586, 666, 739, 784
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	350
Cfr13I	GGNCC	3 cut(s)	215, 407, 546
CseI	GACGC	1 cut(s)	184
CviAII	CATG	5 cut(s)	98, 202, 302, 349, 790
DdeI	CTNAG	6 cut(s)	21, 189, 326, 431, 564, 812
DpnI	GATC	1 cut(s)	603
DpnII	GATC	1 cut(s)	601
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	2 cut(s)	129, 298
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
EciI	GGCGGA	1 cut(s)	323
Ecl136II	GAGCTC	1 cut(s)	251
Eco130I	CCWWGG	3 cut(s)	97, 177, 789
Eco24I	GRGCYC	2 cut(s)	253, 273
Eco31I	GGTCTC	1 cut(s)	682
Eco47I	GGWCC	2 cut(s)	407, 546
Eco53kI	GAGCTC	1 cut(s)	251
Eco57I	CTGAAG	3 cut(s)	437, 665, 791
Eco81I	CCTNAGG	2 cut(s)	189, 564
EcoICRI	GAGCTC	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	546
EcoT14I	CCWWGG	3 cut(s)	97, 177, 789
EcoT38I	GRGCYC	2 cut(s)	253, 273
ErhI	CCWWGG	3 cut(s)	97, 177, 789
FaeI	CATG	5 cut(s)	101, 205, 305, 352, 793
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	5 cut(s)	97, 201, 301, 348, 789
FauI	CCCGC	1 cut(s)	25
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	7 cut(s)	57, 223, 226, 229, 242, 337, 575
FokI	GGATG	6 cut(s)	15, 455, 593, 673, 746, 771
FriOI	GRGCYC	2 cut(s)	253, 273
Fsp4HI	GCNGC	7 cut(s)	57, 223, 226, 229, 242, 337, 575
FspBI	CTAG	2 cut(s)	543, 551
GluI	GCNGC	7 cut(s)	57, 223, 226, 229, 242, 337, 575
GsaI	CCCAGC	1 cut(s)	222
HaeIII	GGCC	3 cut(s)	131, 216, 300
HapII	CCGG	2 cut(s)	115, 279
HgaI	GACGC	1 cut(s)	184
Hin1I	GRCGYC	2 cut(s)	195, 321
Hin1II	CATG	5 cut(s)	101, 205, 305, 352, 793
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	2 cut(s)	115, 279
Hpy166II	GTNNAC	5 cut(s)	82, 174, 237, 448, 469
Hpy188I	TCNGA	3 cut(s)	142, 248, 505
Hpy188III	TCNNGA	4 cut(s)	115, 311, 563, 700
Hpy8I	GTNNAC	5 cut(s)	82, 174, 237, 448, 469
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	5 cut(s)	43, 371, 412, 620, 815
HpyCH4III	ACNGT	4 cut(s)	79, 286, 385, 801
HpyCH4IV	ACGT	3 cut(s)	105, 321, 400
HpyCH4V	TGCA	1 cut(s)	389
HpyF10VI	GCNNNNNNNGC	6 cut(s)	222, 228, 336, 345, 358, 583
HpyF3I	CTNAG	6 cut(s)	21, 189, 326, 431, 564, 812
HpySE526I	ACGT	3 cut(s)	105, 321, 400
Hsp92I	GRCGYC	2 cut(s)	195, 321
Hsp92II	CATG	5 cut(s)	101, 205, 305, 352, 793
Kpn2I	TCCGGA	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	601
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	3 cut(s)	152, 249, 268
Lsp1109I	GCAGC	4 cut(s)	68, 228, 237, 561
LweI	GCATC	1 cut(s)	696
MaeI	CTAG	2 cut(s)	543, 551
MaeII	ACGT	3 cut(s)	105, 321, 400
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	1 cut(s)	603
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	1 cut(s)	601
MboII	GAAGA	2 cut(s)	280, 346
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	4 cut(s)	69, 253, 273, 621
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	2 cut(s)	110, 556
MluNI	TGGCCA	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	579
Mox20I	TGGCCA	1 cut(s)	131
MroI	TCCGGA	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	1 cut(s)	820
MslI	CAYNNNNRTG	1 cut(s)	671
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	2 cut(s)	222, 228
MspI	CCGG	2 cut(s)	115, 279
MspR9I	CCNGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	6 cut(s)	222, 228, 336, 345, 358, 583
NciI	CCSGG	1 cut(s)	280
NcoI	CCATGG	2 cut(s)	97, 789
NdeII	GATC	1 cut(s)	601
NlaIII	CATG	5 cut(s)	101, 205, 305, 352, 793
NlaIV	GGNNCC	5 cut(s)	217, 270, 548, 603, 803
NmuCI	GTSAC	1 cut(s)	434
NspI	RCATGY	1 cut(s)	352
PaeI	GCATGC	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	476
PflMI	CCANNNNNTGG	2 cut(s)	532, 790
PfoI	TCCNGGA	1 cut(s)	278
PkrI	GCNGC	7 cut(s)	58, 224, 227, 230, 243, 338, 576
PpuMI	RGGWCCY	1 cut(s)	546
Psp124BI	GAGCTC	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	546
PspFI	CCCAGC	1 cut(s)	218
PspN4I	GGNNCC	5 cut(s)	217, 270, 548, 603, 803
PspPI	GGNCC	3 cut(s)	215, 407, 546
PspPPI	RGGWCCY	1 cut(s)	546
PsuI	RGATCY	1 cut(s)	601
RseI	CAYNNNNRTG	1 cut(s)	671
SacI	GAGCTC	1 cut(s)	253
SapI	GCTCTTC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	820
SatI	GCNGC	7 cut(s)	57, 223, 226, 229, 242, 337, 575
Sau3AI	GATC	1 cut(s)	601
Sau96I	GGNCC	3 cut(s)	215, 407, 546
ScrFI	CCNGG	1 cut(s)	280
SduI	GDGCHC	4 cut(s)	69, 253, 273, 621
SfaNI	GCATC	1 cut(s)	696
SfcI	CTRYAG	2 cut(s)	60, 612
SinI	GGWCC	2 cut(s)	407, 546
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	774
SmoI	CTYRAG	1 cut(s)	774
SphI	GCATGC	1 cut(s)	352
Sse9I	AATT	2 cut(s)	110, 556
SsiI	CCGC	6 cut(s)	18, 222, 228, 259, 334, 337
SspMI	CTAG	2 cut(s)	543, 551
SstI	GAGCTC	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	3 cut(s)	97, 177, 789
TaaI	ACNGT	4 cut(s)	79, 286, 385, 801
TaiI	ACGT	3 cut(s)	108, 324, 403
TasI	AATT	2 cut(s)	110, 556
TauI	GCSGC	3 cut(s)	225, 231, 339
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	1 cut(s)	820
Tru9I	TTAA	1 cut(s)	820
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	4 cut(s)	56, 225, 241, 574
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	1 cut(s)	468
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	82
Van91I	CCANNNNNTGG	2 cut(s)	532, 790
VpaK11BI	GGWCC	2 cut(s)	407, 546
XapI	RAATTY	1 cut(s)	110
XceI	RCATGY	1 cut(s)	352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	787
XmiI	GTMKAC	1 cut(s)	468
XspI	CTAG	2 cut(s)	543, 551
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.