Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0014429

Physical Location & Seq

Genomic Coordinates Forward (+)

14548585 .. 14551879

Gene Structure 3295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG084100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGATACTTGTCCACACACTATAACAGGTGCTGCTGGAGTATTGGTTTCTAGGGAAGGCTTTATCTATGTACTACTCTGTACAATTGTACTCTCCAAAGTCCAAACCTTCCATAATACAATACCCTTTCTCCTTCCCGTCTCTTCTCCTTCTCACTCAAAACTTTCCACCATGACTTCTCAGGCACACATCACTCTTTCAGCAGAGGAGAATGAAGAAGAAGAAGCAGTACTGGTAATCAATGATGGAGAAGCTGACGGCAACGTGAAGTTTCGGATACGAAATCTGACCAGAAGATCAGAAAGTACAGGAGGAGGAGCTATCATACTGAATAAGCTGAGCGTGGACATCCCAAAAGGAGTGATCGTCGGAATCATAGGCCCAAGTGGCAGCGGCAAATCCACGCTTCTCCGAGCACTCAACCGCCTCTGGGAGCCGCCGGCCGGCACTGTCTTCTTGGACGGCCATGATATTAAAGAACTCGATGTTCTCAGTCTCCGGAGGAAGGTCGGAATGCTCTTCCAGCTTCCTGTTCTTTTTGAAGGTACTGTTGCAGACAACGTTCGTTATGGTCCTCAGTTGAGTGGGAAGAAGCTGACTGATCAAGATGTTCATAAGCTACTGACCCTTGCAGGCCTTGATTCATCTTTTTTCAGTAAAACAGGTTCTGAAATATCTGTAGGCCAAGCCCAAAGAGTTGCACTTGCTAGGACCCTAGCCAATTCACCTGAGGTTTTGCTGTTAGACGAGCCTACTAGCGCCTTGGATCCAATATCAACAGAGCACATAGAAGGTGTTTTAAAAAAGCTGAAGAAGAAACGGGGCATGACAATCATAATGGTTTCACACAGCATCAAACAAATCCAGAGAATTGCTGATGTAGTGTGTCTCCTTGTGAATGGTGAGGTTGTTGAAGTTTTAAAACCAGATAAACTCTCAGAAGCCAAGCACCCTATGGCCATGAGGTTTCTTGAACTCAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0010035 GO:0010038 GO:0010044 GO:0012506 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0031090 GO:0031982 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0090481 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

328

Amino Acids

35.53

Weight (kDa)

7.13

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	110 - 253	2.3e-33	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67940
fragaria_vesca	FvH4_4g06671 FvH4_4g06671
malus_domestica	MD13G1237100.v1.1 MD16G1242500.v1.1
prunus_persica	Prupe.1G069500_v2.0.a1
pyrus_communis	pycom16g20320 pycom16g20330
rosa_chinensis	RchiOBHm_Chr4g0398581
rosa_laevigata	RLG00000009342
rosa_roxburghii	Rroxscaffold_5G00343550
rosa_rugosa	Rorug04G0009500 Rorug04G0009600.1
rosa_samantha	Rh4AG087500 Rh4BG084100 Rh4CG095700 Rh4DG079000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	498
AciI	CCGC	3 cut(s)	393, 424, 437
AclI	AACGTT	1 cut(s)	561
AclWI	GGATC	2 cut(s)	761, 774
AcoI	YGGCCR	3 cut(s)	441, 463, 957
AcuI	CTGAAG	1 cut(s)	830
AfaI	GTAC	6 cut(s)	72, 82, 90, 231, 307, 547
AfiI	CCNNNNNNNGG	3 cut(s)	430, 443, 505
AgsI	TTSAA	3 cut(s)	542, 914, 974
AluBI	AGCT	8 cut(s)	254, 320, 337, 526, 595, 619, 808, 981
AluI	AGCT	8 cut(s)	254, 320, 337, 526, 595, 619, 808, 981
Alw21I	GWGCWC	2 cut(s)	418, 786
Alw26I	GTCTC	3 cut(s)	145, 500, 893
AlwI	GGATC	2 cut(s)	761, 774
AlwNI	CAGNNNCTG	2 cut(s)	32, 668
Aor13HI	TCCGGA	1 cut(s)	498
AoxI	GGCC	6 cut(s)	379, 441, 463, 634, 682, 957
ApeKI	GCWGC	2 cut(s)	32, 390
AspLEI	GCGC	1 cut(s)	761
AspS9I	GGNCC	3 cut(s)	380, 572, 711
AsuHPI	GGTGA	2 cut(s)	717, 914
AvaII	GGWCC	2 cut(s)	572, 711
AxyI	CCTNAGG	1 cut(s)	729
BalI	TGGCCA	1 cut(s)	959
BamHI	GGATCC	1 cut(s)	766
BarI	GAAGNNNNNNTAC	2 cut(s)	213, 245
BbsI	GAAGAC	1 cut(s)	445
Bbv12I	GWGCWC	2 cut(s)	418, 786
BbvI	GCAGC	2 cut(s)	19, 402
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	2 cut(s)	274, 478
BciVI	GTATCC	1 cut(s)	270
BclI	TGATCA	1 cut(s)	601
BcoDI	GTCTC	3 cut(s)	145, 500, 893
BfaI	CTAG	4 cut(s)	51, 708, 716, 756
BfmI	CTRYAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	762
BfuI	GTATCC	1 cut(s)	270
BglI	GCCNNNNNGGC	1 cut(s)	387
BisI	GCNGC	4 cut(s)	33, 391, 394, 437
BlpI	GCTNAGC	1 cut(s)	338
BlsI	GCNGC	4 cut(s)	34, 392, 395, 438
BmcAI	AGTACT	1 cut(s)	231
Bme18I	GGWCC	2 cut(s)	572, 711
BmgT120I	GGNCC	3 cut(s)	380, 572, 711
BmiI	GGNNCC	3 cut(s)	435, 713, 768
BmsI	GCATC	1 cut(s)	861
BpiI	GAAGAC	1 cut(s)	445
BpmI	CTGGAG	1 cut(s)	57
Bpu1102I	GCTNAGC	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	762
BsaWI	WCCGGW	1 cut(s)	498
BsaXI	ACNNNNNCTCC	6 cut(s)	30, 60, 114, 144, 351, 381
Bsc4I	CCNNNNNNNGG	3 cut(s)	430, 443, 505
Bse118I	RCCGGY	2 cut(s)	439, 443
Bse1I	ACTGG	1 cut(s)	237
Bse21I	CCTNAGG	1 cut(s)	729
BseAI	TCCGGA	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	762
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	3 cut(s)	430, 443, 505
BseMII	CTCAG	6 cut(s)	194, 329, 505, 590, 720, 951
BseNI	ACTGG	1 cut(s)	237
BseRI	GAGGAG	3 cut(s)	221, 327, 330
BseX3I	CGGCCG	1 cut(s)	441
BseXI	GCAGC	2 cut(s)	19, 402
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	6 cut(s)	381, 443, 465, 636, 684, 959
BsiEI	CGRYCG	1 cut(s)	444
BsiHKAI	GWGCWC	2 cut(s)	418, 786
BsiSI	CCGG	3 cut(s)	440, 444, 499
BslI	CCNNNNNNNGG	3 cut(s)	430, 443, 505
BsmAI	GTCTC	3 cut(s)	145, 500, 893
BsmBI	CGTCTC	1 cut(s)	145
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	6 cut(s)	381, 443, 465, 636, 684, 959
Bsp1286I	GDGCHC	2 cut(s)	418, 786
Bsp13I	TCCGGA	1 cut(s)	498
Bsp1407I	TGTACA	1 cut(s)	80
Bsp143I	GATC	4 cut(s)	296, 363, 601, 766
Bsp1720I	GCTNAGC	1 cut(s)	338
BspACI	CCGC	3 cut(s)	393, 424, 437
BspANI	GGCC	6 cut(s)	381, 443, 465, 636, 684, 959
BspCNI	CTCAG	6 cut(s)	193, 330, 504, 589, 721, 950
BspEI	TCCGGA	1 cut(s)	498
BspLI	GGNNCC	3 cut(s)	435, 713, 768
BspPI	GGATC	2 cut(s)	761, 774
BspQI	GCTCTTC	1 cut(s)	524
BsrFI	RCCGGY	2 cut(s)	439, 443
BsrGI	TGTACA	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	237
BssAI	RCCGGY	2 cut(s)	439, 443
BssECI	CCNNGG	1 cut(s)	762
BssMI	GATC	4 cut(s)	296, 363, 601, 766
BssT1I	CCWWGG	1 cut(s)	762
Bst4CI	ACNGT	2 cut(s)	451, 550
Bst6I	CTCTTC	2 cut(s)	148, 524
BstAUI	TGTACA	1 cut(s)	80
BstC8I	GCNNGC	3 cut(s)	441, 445, 634
BstDEI	CTNAG	7 cut(s)	180, 338, 491, 576, 729, 937, 977
BstF5I	GGATG	1 cut(s)	348
BstH2I	RGCGCY	1 cut(s)	762
BstHHI	GCGC	1 cut(s)	761
BstKTI	GATC	4 cut(s)	299, 366, 604, 769
BstMAI	GTCTC	3 cut(s)	145, 500, 893
BstMBI	GATC	4 cut(s)	296, 363, 601, 766
BstMCI	CGRYCG	1 cut(s)	444
BstMWI	GCNNNNNNNGC	2 cut(s)	387, 523
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	2 cut(s)	19, 402
BstV2I	GAAGAC	1 cut(s)	445
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
BstZI	CGGCCG	1 cut(s)	441
Bsu36I	CCTNAGG	1 cut(s)	729
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	6 cut(s)	381, 443, 465, 636, 684, 959
BtsCI	GGATG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	3 cut(s)	441, 445, 634
CaiI	CAGNNNCTG	2 cut(s)	32, 668
CfoI	GCGC	1 cut(s)	761
Cfr10I	RCCGGY	2 cut(s)	439, 443
Cfr13I	GGNCC	3 cut(s)	380, 572, 711
Csp6I	GTAC	6 cut(s)	71, 81, 89, 230, 306, 546
CviAII	CATG	4 cut(s)	172, 467, 826, 961
CviQI	GTAC	6 cut(s)	71, 81, 89, 230, 306, 546
DdeI	CTNAG	7 cut(s)	180, 338, 491, 576, 729, 937, 977
DpnI	GATC	4 cut(s)	298, 365, 603, 768
DpnII	GATC	4 cut(s)	296, 363, 601, 766
DraI	TTTAAA	2 cut(s)	801, 921
EaeI	YGGCCR	3 cut(s)	441, 463, 957
EagI	CGGCCG	1 cut(s)	441
Eam1104I	CTCTTC	2 cut(s)	148, 524
EarI	CTCTTC	2 cut(s)	148, 524
EclXI	CGGCCG	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	762
Eco147I	AGGCCT	1 cut(s)	636
Eco47I	GGWCC	2 cut(s)	572, 711
Eco52I	CGGCCG	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	830
Eco81I	CCTNAGG	1 cut(s)	729
EcoO109I	RGGNCCY	1 cut(s)	711
EcoT14I	CCWWGG	1 cut(s)	762
ErhI	CCWWGG	1 cut(s)	762
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	4 cut(s)	175, 470, 829, 964
FatI	CATG	4 cut(s)	171, 466, 825, 960
FbaI	TGATCA	1 cut(s)	601
Fnu4HI	GCNGC	4 cut(s)	33, 391, 394, 437
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	4 cut(s)	33, 391, 394, 437
FspBI	CTAG	4 cut(s)	51, 708, 716, 756
GlaI	GCGC	1 cut(s)	760
GluI	GCNGC	4 cut(s)	33, 391, 394, 437
GsuI	CTGGAG	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	762
HaeIII	GGCC	6 cut(s)	381, 443, 465, 636, 684, 959
HapII	CCGG	3 cut(s)	440, 444, 499
HhaI	GCGC	1 cut(s)	761
Hin1II	CATG	4 cut(s)	175, 470, 829, 964
Hin6I	GCGC	1 cut(s)	759
HinP1I	GCGC	1 cut(s)	759
HinfI	GANTC	2 cut(s)	372, 641
HpaII	CCGG	3 cut(s)	440, 444, 499
HphI	GGTGA	2 cut(s)	717, 914
Hpy166II	GTNNAC	2 cut(s)	14, 346
Hpy188I	TCNGA	8 cut(s)	276, 288, 301, 371, 413, 512, 670, 940
Hpy188III	TCNNGA	4 cut(s)	499, 605, 865, 971
Hpy8I	GTNNAC	2 cut(s)	14, 346
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	7 cut(s)	50, 118, 143, 159, 499, 536, 785
HpyCH4III	ACNGT	2 cut(s)	451, 550
HpyCH4IV	ACGT	2 cut(s)	264, 561
HpyCH4V	TGCA	3 cut(s)	554, 632, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	387, 523
HpyF3I	CTNAG	7 cut(s)	180, 338, 491, 576, 729, 937, 977
HpySE526I	ACGT	2 cut(s)	264, 561
Hsp92II	CATG	4 cut(s)	175, 470, 829, 964
HspAI	GCGC	1 cut(s)	759
Kpn2I	TCCGGA	1 cut(s)	498
KroI	GCCGGC	2 cut(s)	439, 443
KroNI	GCCGGC	2 cut(s)	441, 445
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	4 cut(s)	296, 363, 601, 766
LguI	GCTCTTC	1 cut(s)	524
LmnI	GCTCC	2 cut(s)	317, 433
Lsp1109I	GCAGC	2 cut(s)	19, 402
LweI	GCATC	1 cut(s)	861
MaeI	CTAG	4 cut(s)	51, 708, 716, 756
MaeII	ACGT	2 cut(s)	264, 561
MalI	GATC	4 cut(s)	298, 365, 603, 768
MboI	GATC	4 cut(s)	296, 363, 601, 766
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	1 cut(s)	766
MhlI	GDGCHC	2 cut(s)	418, 786
MlsI	TGGCCA	1 cut(s)	959
MluCI	AATT	3 cut(s)	84, 721, 870
MluNI	TGGCCA	1 cut(s)	959
MmeI	TCCRAC	2 cut(s)	349, 490
MnlI	CCTC	9 cut(s)	199, 305, 308, 437, 495, 585, 724, 898, 957
Mox20I	TGGCCA	1 cut(s)	959
MroI	TCCGGA	1 cut(s)	498
MroNI	GCCGGC	2 cut(s)	439, 443
MscI	TGGCCA	1 cut(s)	959
MseI	TTAA	4 cut(s)	474, 800, 920, 985
Msp20I	TGGCCA	1 cut(s)	959
MspA1I	CMGCKG	1 cut(s)	393
MspI	CCGG	3 cut(s)	440, 444, 499
MunI	CAATTG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	519
MwoI	GCNNNNNNNGC	2 cut(s)	387, 523
NaeI	GCCGGC	2 cut(s)	441, 445
NdeII	GATC	4 cut(s)	296, 363, 601, 766
NgoMIV	GCCGGC	2 cut(s)	439, 443
NlaIII	CATG	4 cut(s)	175, 470, 829, 964
NlaIV	GGNNCC	3 cut(s)	435, 713, 768
PceI	AGGCCT	1 cut(s)	636
PciSI	GCTCTTC	1 cut(s)	524
PctI	GAATGC	1 cut(s)	519
PdiI	GCCGGC	2 cut(s)	441, 445
PfeI	GAWTC	2 cut(s)	372, 641
PkrI	GCNGC	4 cut(s)	34, 392, 395, 438
PpuMI	RGGWCCY	1 cut(s)	711
Psp1406I	AACGTT	1 cut(s)	561
Psp5II	RGGWCCY	1 cut(s)	711
PspN4I	GGNNCC	3 cut(s)	435, 713, 768
PspPI	GGNCC	3 cut(s)	380, 572, 711
PspPPI	RGGWCCY	1 cut(s)	711
PsrI	GAACNNNNNNTAC	2 cut(s)	649, 681
PstNI	CAGNNNCTG	2 cut(s)	32, 668
PsuI	RGATCY	1 cut(s)	766
RsaI	GTAC	6 cut(s)	72, 82, 90, 231, 307, 547
RsaNI	GTAC	6 cut(s)	71, 81, 89, 230, 306, 546
SapI	GCTCTTC	1 cut(s)	524
SaqAI	TTAA	4 cut(s)	474, 800, 920, 985
SatI	GCNGC	4 cut(s)	33, 391, 394, 437
Sau3AI	GATC	4 cut(s)	296, 363, 601, 766
Sau96I	GGNCC	3 cut(s)	380, 572, 711
ScaI	AGTACT	1 cut(s)	231
SduI	GDGCHC	2 cut(s)	418, 786
SfaNI	GCATC	1 cut(s)	861
SfcI	CTRYAG	1 cut(s)	678
SinI	GGWCC	2 cut(s)	572, 711
Sse9I	AATT	3 cut(s)	84, 721, 870
SseBI	AGGCCT	1 cut(s)	636
SsiI	CCGC	3 cut(s)	393, 424, 437
SspMI	CTAG	4 cut(s)	51, 708, 716, 756
StuI	AGGCCT	1 cut(s)	636
StyI	CCWWGG	1 cut(s)	762
TaaI	ACNGT	2 cut(s)	451, 550
TaiI	ACGT	2 cut(s)	267, 564
TaqI	TCGA	1 cut(s)	483
TasI	AATT	3 cut(s)	84, 721, 870
TatI	WGTACW	5 cut(s)	70, 80, 88, 229, 305
TauI	GCSGC	2 cut(s)	396, 439
TfiI	GAWTC	2 cut(s)	372, 641
Tru1I	TTAA	4 cut(s)	474, 800, 920, 985
Tru9I	TTAA	4 cut(s)	474, 800, 920, 985
TscAI	CASTG	1 cut(s)	454
TseI	GCWGC	2 cut(s)	32, 390
TspDTI	ATGAA	3 cut(s)	228, 602, 633
TspRI	CASTG	1 cut(s)	454
VpaK11BI	GGWCC	2 cut(s)	572, 711
XcmI	CCANNNNNNNNNTGG	1 cut(s)	952
XspI	CTAG	4 cut(s)	51, 708, 716, 756
ZrmI	AGTACT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.