Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0014429

Physical Location & Seq

Genomic Coordinates Forward (+)

18273229 .. 18275793

Gene Structure 2565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG087500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGATACTTGTCCACACACTATAACAGGTGCTGCTGGAGTATTGGTTTCTAGGGAAGGCTTTATCTATCTATGTACTCTGTACAATTGTACTCTCCAAACCTTTCATAATACGATACCCTTTCTCCTTCCCGTCTCTTCTCCTTCTCACTCAAAACTTTCCACCATGACTTCTGAGGCACACATCACTCTTTCAGAGGAGAATGAAGAAGAAGAAGCAGTACTGGTAATTAATGATGGAGAAGCTGACGGCAACGTGAAGTTTCGGATACGAAATCTGACCAGAAGATCAGAAAGTAGTGGAGGAGGAGCTATCATACTGAATGAGCTGAGCGTGGACATCCCAAAAGGAGTGATCGTCGGAATCATAGGCCCAAGTGGCAGCGGCAAATCCACGCTTCTCCGAGCACTCAACCGCCTCTGGGAGCCGCCGGCTGGCACTGTCTTCTTGGACGGCCATGATATTAAACAACTCGATGTTCTCAGTCTCCGGAGGAAGGTCGGAATGCTCTTCCAGCTTCCTGTTCTTTTTGAAGGTACTGTTGCAGACAACGTTCGTTATGGTCCTCAGTTGAGTGGGAAGAAGCTGACTGATCAAGATGTTCATAAGCTACTGACCCTTGCAGGCCTTGATTCATCTTTTTTCAGTAAAACAGGTTCTGAAATATCTGTAGGCCAAGCCCAAAGAGTTGCACTTGCTAGGACCCTAGCCAATTCACCTGAGGTTTTGCTGTTAGACGAGCCTACTAGCGCCTTGGATCCAATATCAACAGAGCACATAGAAGGTGTTTTAGAAAAGCTGAAGAAGAAACGGGGCATGACAATCATAATGGTCTCACACAGCATCAAACAAATCCAGAGAATTGCTGATGTAGTGTGTCTCCTTGTGAATGGTGAGGTTGTTGAAGTTTTAAAACCAGATAAACTCTCAGAAGCCAAGCACCCTATGGCCTTGAGGTTTCTTGAACTCAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0010035 GO:0010038 GO:0010044 GO:0012506 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0031090 GO:0031982 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0090481 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

325

Amino Acids

35.28

Weight (kDa)

6.01

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	107 - 250	2e-33	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67940
fragaria_vesca	FvH4_4g06671 FvH4_4g06671
malus_domestica	MD13G1237100.v1.1 MD16G1242500.v1.1
prunus_persica	Prupe.1G069500_v2.0.a1
pyrus_communis	pycom16g20320 pycom16g20330
rosa_chinensis	RchiOBHm_Chr4g0398581
rosa_laevigata	RLG00000009342
rosa_roxburghii	Rroxscaffold_5G00343550
rosa_rugosa	Rorug04G0009500 Rorug04G0009600.1
rosa_samantha	Rh4AG087500 Rh4BG084100 Rh4CG095700 Rh4DG079000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	489
AciI	CCGC	3 cut(s)	384, 415, 428
AclI	AACGTT	1 cut(s)	552
AclWI	GGATC	2 cut(s)	752, 765
AcoI	YGGCCR	1 cut(s)	454
AcuI	CTGAAG	1 cut(s)	821
AfaI	GTAC	5 cut(s)	76, 83, 91, 222, 538
AfiI	CCNNNNNNNGG	3 cut(s)	421, 434, 496
AgsI	TTSAA	3 cut(s)	533, 905, 965
AluBI	AGCT	8 cut(s)	245, 311, 328, 517, 586, 610, 799, 972
AluI	AGCT	8 cut(s)	245, 311, 328, 517, 586, 610, 799, 972
Alw21I	GWGCWC	2 cut(s)	409, 777
Alw26I	GTCTC	4 cut(s)	139, 491, 838, 884
AlwI	GGATC	2 cut(s)	752, 765
AlwNI	CAGNNNCTG	2 cut(s)	32, 659
Aor13HI	TCCGGA	1 cut(s)	489
AoxI	GGCC	5 cut(s)	370, 454, 625, 673, 948
ApeKI	GCWGC	2 cut(s)	32, 381
AseI	ATTAAT	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	752
AspS9I	GGNCC	3 cut(s)	371, 563, 702
AsuHPI	GGTGA	2 cut(s)	708, 905
AvaII	GGWCC	2 cut(s)	563, 702
AxyI	CCTNAGG	1 cut(s)	720
BamHI	GGATCC	1 cut(s)	757
BarI	GAAGNNNNNNTAC	2 cut(s)	204, 236
BbsI	GAAGAC	1 cut(s)	436
Bbv12I	GWGCWC	2 cut(s)	409, 777
BbvI	GCAGC	2 cut(s)	19, 393
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	2 cut(s)	265, 469
BciVI	GTATCC	1 cut(s)	261
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	4 cut(s)	139, 491, 838, 884
BfaI	CTAG	4 cut(s)	51, 699, 707, 747
BfmI	CTRYAG	1 cut(s)	669
BfoI	RGCGCY	1 cut(s)	753
BfuI	GTATCC	1 cut(s)	261
BglI	GCCNNNNNGGC	1 cut(s)	378
BisI	GCNGC	4 cut(s)	33, 382, 385, 428
BlpI	GCTNAGC	1 cut(s)	329
BlsI	GCNGC	4 cut(s)	34, 383, 386, 429
BmcAI	AGTACT	1 cut(s)	222
Bme18I	GGWCC	2 cut(s)	563, 702
BmgT120I	GGNCC	3 cut(s)	371, 563, 702
BmiI	GGNNCC	3 cut(s)	426, 704, 759
BmsI	GCATC	1 cut(s)	852
BpiI	GAAGAC	1 cut(s)	436
BpmI	CTGGAG	1 cut(s)	57
Bpu1102I	GCTNAGC	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	973
BsaI	GGTCTC	1 cut(s)	838
BsaJI	CCNNGG	1 cut(s)	753
BsaWI	WCCGGW	1 cut(s)	489
BsaXI	ACNNNNNCTCC	6 cut(s)	30, 60, 108, 138, 342, 372
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 434, 496
Bse118I	RCCGGY	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	228
Bse21I	CCTNAGG	1 cut(s)	720
BseAI	TCCGGA	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	753
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	3 cut(s)	421, 434, 496
BseMII	CTCAG	6 cut(s)	165, 320, 496, 581, 711, 942
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	3 cut(s)	212, 318, 321
BseXI	GCAGC	2 cut(s)	19, 393
BshFI	GGCC	5 cut(s)	372, 456, 627, 675, 950
BsiHKAI	GWGCWC	2 cut(s)	409, 777
BsiSI	CCGG	2 cut(s)	431, 490
BslI	CCNNNNNNNGG	3 cut(s)	421, 434, 496
BsmAI	GTCTC	4 cut(s)	139, 491, 838, 884
BsmBI	CGTCTC	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	510
BsnI	GGCC	5 cut(s)	372, 456, 627, 675, 950
Bso31I	GGTCTC	1 cut(s)	838
Bsp1286I	GDGCHC	2 cut(s)	409, 777
Bsp13I	TCCGGA	1 cut(s)	489
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	4 cut(s)	287, 354, 592, 757
Bsp1720I	GCTNAGC	1 cut(s)	329
BspACI	CCGC	3 cut(s)	384, 415, 428
BspANI	GGCC	5 cut(s)	372, 456, 627, 675, 950
BspCNI	CTCAG	6 cut(s)	166, 321, 495, 580, 712, 941
BspEI	TCCGGA	1 cut(s)	489
BspLI	GGNNCC	3 cut(s)	426, 704, 759
BspPI	GGATC	2 cut(s)	752, 765
BspQI	GCTCTTC	1 cut(s)	515
BspTNI	GGTCTC	1 cut(s)	838
BsrFI	RCCGGY	1 cut(s)	430
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	430
BssECI	CCNNGG	1 cut(s)	753
BssMI	GATC	4 cut(s)	287, 354, 592, 757
BssT1I	CCWWGG	1 cut(s)	753
Bst4CI	ACNGT	2 cut(s)	442, 541
Bst6I	CTCTTC	2 cut(s)	142, 515
BstAUI	TGTACA	1 cut(s)	81
BstC8I	GCNNGC	3 cut(s)	432, 436, 625
BstDEI	CTNAG	7 cut(s)	174, 329, 482, 567, 720, 928, 968
BstF5I	GGATG	1 cut(s)	339
BstH2I	RGCGCY	1 cut(s)	753
BstHHI	GCGC	1 cut(s)	752
BstKTI	GATC	4 cut(s)	290, 357, 595, 760
BstMAI	GTCTC	4 cut(s)	139, 491, 838, 884
BstMBI	GATC	4 cut(s)	287, 354, 592, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	378, 514
BstSFI	CTRYAG	1 cut(s)	669
BstV1I	GCAGC	2 cut(s)	19, 393
BstV2I	GAAGAC	1 cut(s)	436
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
Bsu36I	CCTNAGG	1 cut(s)	720
BsuI	GTATCC	1 cut(s)	261
BsuRI	GGCC	5 cut(s)	372, 456, 627, 675, 950
BtsCI	GGATG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	438
Cac8I	GCNNGC	3 cut(s)	432, 436, 625
CaiI	CAGNNNCTG	2 cut(s)	32, 659
CfoI	GCGC	1 cut(s)	752
Cfr10I	RCCGGY	1 cut(s)	430
Cfr13I	GGNCC	3 cut(s)	371, 563, 702
Csp6I	GTAC	5 cut(s)	75, 82, 90, 221, 537
CviAII	CATG	3 cut(s)	166, 458, 817
CviQI	GTAC	5 cut(s)	75, 82, 90, 221, 537
DdeI	CTNAG	7 cut(s)	174, 329, 482, 567, 720, 928, 968
DpnI	GATC	4 cut(s)	289, 356, 594, 759
DpnII	GATC	4 cut(s)	287, 354, 592, 757
DraI	TTTAAA	1 cut(s)	912
EaeI	YGGCCR	1 cut(s)	454
Eam1104I	CTCTTC	2 cut(s)	142, 515
EarI	CTCTTC	2 cut(s)	142, 515
Eco130I	CCWWGG	1 cut(s)	753
Eco147I	AGGCCT	1 cut(s)	627
Eco31I	GGTCTC	1 cut(s)	838
Eco47I	GGWCC	2 cut(s)	563, 702
Eco57I	CTGAAG	1 cut(s)	821
Eco81I	CCTNAGG	1 cut(s)	720
EcoO109I	RGGNCCY	1 cut(s)	702
EcoT14I	CCWWGG	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	753
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	3 cut(s)	169, 461, 820
FatI	CATG	3 cut(s)	165, 457, 816
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	4 cut(s)	33, 382, 385, 428
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	4 cut(s)	33, 382, 385, 428
FspBI	CTAG	4 cut(s)	51, 699, 707, 747
GlaI	GCGC	1 cut(s)	751
GluI	GCNGC	4 cut(s)	33, 382, 385, 428
GsuI	CTGGAG	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	753
HaeIII	GGCC	5 cut(s)	372, 456, 627, 675, 950
HapII	CCGG	2 cut(s)	431, 490
HhaI	GCGC	1 cut(s)	752
Hin1II	CATG	3 cut(s)	169, 461, 820
Hin6I	GCGC	1 cut(s)	750
HinP1I	GCGC	1 cut(s)	750
HinfI	GANTC	2 cut(s)	363, 632
HpaII	CCGG	2 cut(s)	431, 490
HphI	GGTGA	2 cut(s)	708, 905
Hpy166II	GTNNAC	2 cut(s)	14, 337
Hpy188III	TCNNGA	4 cut(s)	490, 596, 856, 962
Hpy8I	GTNNAC	2 cut(s)	14, 337
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	6 cut(s)	50, 137, 153, 490, 527, 776
HpyCH4III	ACNGT	2 cut(s)	442, 541
HpyCH4IV	ACGT	2 cut(s)	255, 552
HpyCH4V	TGCA	3 cut(s)	545, 623, 692
HpyF10VI	GCNNNNNNNGC	2 cut(s)	378, 514
HpyF3I	CTNAG	7 cut(s)	174, 329, 482, 567, 720, 928, 968
HpySE526I	ACGT	2 cut(s)	255, 552
Hsp92II	CATG	3 cut(s)	169, 461, 820
HspAI	GCGC	1 cut(s)	750
Kpn2I	TCCGGA	1 cut(s)	489
KroI	GCCGGC	1 cut(s)	430
KroNI	GCCGGC	1 cut(s)	432
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	4 cut(s)	287, 354, 592, 757
LguI	GCTCTTC	1 cut(s)	515
LmnI	GCTCC	2 cut(s)	308, 424
Lsp1109I	GCAGC	2 cut(s)	19, 393
LweI	GCATC	1 cut(s)	852
MaeI	CTAG	4 cut(s)	51, 699, 707, 747
MaeII	ACGT	2 cut(s)	255, 552
MalI	GATC	4 cut(s)	289, 356, 594, 759
MboI	GATC	4 cut(s)	287, 354, 592, 757
MfeI	CAATTG	1 cut(s)	85
MflI	RGATCY	1 cut(s)	757
MhlI	GDGCHC	2 cut(s)	409, 777
MluCI	AATT	4 cut(s)	85, 228, 712, 861
MmeI	TCCRAC	2 cut(s)	340, 481
MroI	TCCGGA	1 cut(s)	489
MroNI	GCCGGC	1 cut(s)	430
MseI	TTAA	4 cut(s)	231, 465, 911, 976
MspA1I	CMGCKG	1 cut(s)	384
MspI	CCGG	2 cut(s)	431, 490
MunI	CAATTG	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	510
MwoI	GCNNNNNNNGC	2 cut(s)	378, 514
NaeI	GCCGGC	1 cut(s)	432
NdeII	GATC	4 cut(s)	287, 354, 592, 757
NgoMIV	GCCGGC	1 cut(s)	430
NlaIII	CATG	3 cut(s)	169, 461, 820
NlaIV	GGNNCC	3 cut(s)	426, 704, 759
PceI	AGGCCT	1 cut(s)	627
PciSI	GCTCTTC	1 cut(s)	515
PctI	GAATGC	1 cut(s)	510
PdiI	GCCGGC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	363, 632
PkrI	GCNGC	4 cut(s)	34, 383, 386, 429
PpuMI	RGGWCCY	1 cut(s)	702
PshBI	ATTAAT	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	552
Psp5II	RGGWCCY	1 cut(s)	702
PspN4I	GGNNCC	3 cut(s)	426, 704, 759
PspPI	GGNCC	3 cut(s)	371, 563, 702
PspPPI	RGGWCCY	1 cut(s)	702
PsrI	GAACNNNNNNTAC	2 cut(s)	640, 672
PstNI	CAGNNNCTG	2 cut(s)	32, 659
PsuI	RGATCY	1 cut(s)	757
RsaI	GTAC	5 cut(s)	76, 83, 91, 222, 538
RsaNI	GTAC	5 cut(s)	75, 82, 90, 221, 537
SapI	GCTCTTC	1 cut(s)	515
SaqAI	TTAA	4 cut(s)	231, 465, 911, 976
SatI	GCNGC	4 cut(s)	33, 382, 385, 428
Sau3AI	GATC	4 cut(s)	287, 354, 592, 757
Sau96I	GGNCC	3 cut(s)	371, 563, 702
ScaI	AGTACT	1 cut(s)	222
SduI	GDGCHC	2 cut(s)	409, 777
SfaNI	GCATC	1 cut(s)	852
SfcI	CTRYAG	1 cut(s)	669
SinI	GGWCC	2 cut(s)	563, 702
SmlI	CTYRAG	1 cut(s)	952
SmoI	CTYRAG	1 cut(s)	952
Sse9I	AATT	4 cut(s)	85, 228, 712, 861
SseBI	AGGCCT	1 cut(s)	627
SsiI	CCGC	3 cut(s)	384, 415, 428
SspMI	CTAG	4 cut(s)	51, 699, 707, 747
StuI	AGGCCT	1 cut(s)	627
StyI	CCWWGG	1 cut(s)	753
TaaI	ACNGT	2 cut(s)	442, 541
TaiI	ACGT	2 cut(s)	258, 555
TaqI	TCGA	1 cut(s)	474
TasI	AATT	4 cut(s)	85, 228, 712, 861
TatI	WGTACW	4 cut(s)	74, 81, 89, 220
TauI	GCSGC	2 cut(s)	387, 430
TfiI	GAWTC	2 cut(s)	363, 632
Tru1I	TTAA	4 cut(s)	231, 465, 911, 976
Tru9I	TTAA	4 cut(s)	231, 465, 911, 976
TscAI	CASTG	1 cut(s)	445
TseI	GCWGC	2 cut(s)	32, 381
TspDTI	ATGAA	4 cut(s)	95, 219, 593, 624
TspRI	CASTG	1 cut(s)	445
VpaK11BI	GGWCC	2 cut(s)	563, 702
VspI	ATTAAT	1 cut(s)	231
XcmI	CCANNNNNNNNNTGG	1 cut(s)	943
XspI	CTAG	4 cut(s)	51, 699, 707, 747
ZrmI	AGTACT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.