Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014429

Physical Location & Seq

Genomic Coordinates Forward (+)

13060304 .. 13063092

Gene Structure 2789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGACTTCTCAGGCACACATCACTCTTTCAGCAGAGGAGAATGAAGAAGAAGAAGCAGTACTGGTAATCAATGATGGAGAAGCTGACGGCAACGTGAAGTTTCGGATACGAAATCTGACCAGAAGATCAGAAAGTAGAGGAGGAGGAGGAGCTATCATACTGAATGAGCTGAGCGCGGACATCCCAAAAGGAGTGATCGTCGGAATCATAGGCCCAAGTGGCAGCGGCAAATCCACGCTTCTCCGAGCACTCAACCGCCTCTGGGAGCCGCCGGCCGGCACTGTCTTCTTGGACGGCCATGATATTAAACAACTCGATGTCCTCAGTCTCCGGAGGAAGGTCGGAATGCTCTTCCAGCTTCCTGTTCTTTTTGAAGGTACTGTTGCAGACAACGTTCGTTATGGTCCTCAGTTGAGTGGGAAGAAGCTGACTGACCAAGATGTTCATAAGCTACTGACCCTTGCAGGCCTTGATTCATCTTTTTTCAGTAAAACAGGTTCTGAAATATCTGTAGGCCAAGCCCAAAGAGTTGCACTTGCTAGGACCCTAGCCAATTCACCTGAGGTTTTGCTGTTAGACGAGCCTACTAGCGCCTTGGATCCAATATCAACAGAGCACATAGAAGGTGTTTTAGAAAAGCTGAAGAAGAAACGGGGCATGACAATCATAATGGTCTCACACAGCATCAAACAAATCCAGAGAATTGCTGATGTAGTGTGTCTCCTTGTGAATGGTGAGGTTGTTGAAGTTTTAAAACCAGATAAACTCTCAGAAGCCAAGCACCCTATGGCCTTGAGGTTTCTTGAACTCAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0010035 GO:0010038 GO:0010044 GO:0012506 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0031090 GO:0031982 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0090481 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

272

Amino Acids

29.48

Weight (kDa)

6.11

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	54 - 197	2.6e-33	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67940
fragaria_vesca	FvH4_4g06671 FvH4_4g06671
malus_domestica	MD13G1237100.v1.1 MD16G1242500.v1.1
prunus_persica	Prupe.1G069500_v2.0.a1
pyrus_communis	pycom16g20320 pycom16g20330
rosa_chinensis	RchiOBHm_Chr4g0398581
rosa_laevigata	RLG00000009342
rosa_roxburghii	Rroxscaffold_5G00343550
rosa_rugosa	Rorug04G0009500 Rorug04G0009600.1
rosa_samantha	Rh4AG087500 Rh4BG084100 Rh4CG095700 Rh4DG079000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	176
AccIII	TCCGGA	1 cut(s)	330
AciI	CCGC	4 cut(s)	176, 225, 256, 269
AclI	AACGTT	1 cut(s)	393
AclWI	GGATC	2 cut(s)	593, 606
AcoI	YGGCCR	2 cut(s)	273, 295
AcuI	CTGAAG	1 cut(s)	662
AfaI	GTAC	2 cut(s)	60, 379
AfiI	CCNNNNNNNGG	3 cut(s)	262, 275, 337
AgsI	TTSAA	3 cut(s)	374, 746, 806
AluBI	AGCT	8 cut(s)	83, 152, 169, 358, 427, 451, 640, 813
AluI	AGCT	8 cut(s)	83, 152, 169, 358, 427, 451, 640, 813
Alw21I	GWGCWC	2 cut(s)	250, 618
Alw26I	GTCTC	3 cut(s)	332, 679, 725
AlwI	GGATC	2 cut(s)	593, 606
AlwNI	CAGNNNCTG	1 cut(s)	500
Aor13HI	TCCGGA	1 cut(s)	330
AoxI	GGCC	6 cut(s)	211, 273, 295, 466, 514, 789
ApeKI	GCWGC	1 cut(s)	222
AspLEI	GCGC	2 cut(s)	176, 593
AspS9I	GGNCC	3 cut(s)	212, 404, 543
AsuHPI	GGTGA	2 cut(s)	549, 746
AvaII	GGWCC	2 cut(s)	404, 543
AxyI	CCTNAGG	1 cut(s)	561
BamHI	GGATCC	1 cut(s)	598
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
BbsI	GAAGAC	1 cut(s)	277
Bbv12I	GWGCWC	2 cut(s)	250, 618
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	1 cut(s)	68
BceAI	ACGGC	2 cut(s)	103, 310
BciVI	GTATCC	1 cut(s)	99
BcoDI	GTCTC	3 cut(s)	332, 679, 725
BfaI	CTAG	3 cut(s)	540, 548, 588
BfmI	CTRYAG	1 cut(s)	510
BfoI	RGCGCY	1 cut(s)	594
BfuI	GTATCC	1 cut(s)	99
BglI	GCCNNNNNGGC	1 cut(s)	219
BisI	GCNGC	3 cut(s)	223, 226, 269
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	3 cut(s)	224, 227, 270
BmcAI	AGTACT	1 cut(s)	60
Bme18I	GGWCC	2 cut(s)	404, 543
BmgT120I	GGNCC	3 cut(s)	212, 404, 543
BmiI	GGNNCC	3 cut(s)	267, 545, 600
BmsI	GCATC	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	277
Bpu1102I	GCTNAGC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	814
BsaI	GGTCTC	1 cut(s)	679
BsaJI	CCNNGG	1 cut(s)	594
BsaWI	WCCGGW	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 275, 337
Bse118I	RCCGGY	2 cut(s)	271, 275
Bse1I	ACTGG	1 cut(s)	66
Bse21I	CCTNAGG	1 cut(s)	561
BseAI	TCCGGA	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	594
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	3 cut(s)	262, 275, 337
BseMII	CTCAG	6 cut(s)	23, 161, 337, 422, 552, 783
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	5 cut(s)	50, 153, 156, 159, 162
BseX3I	CGGCCG	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	234
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	6 cut(s)	213, 275, 297, 468, 516, 791
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	2 cut(s)	250, 618
BsiSI	CCGG	3 cut(s)	272, 276, 331
BslI	CCNNNNNNNGG	3 cut(s)	262, 275, 337
BsmAI	GTCTC	3 cut(s)	332, 679, 725
BsmI	GAATGC	1 cut(s)	351
BsnI	GGCC	6 cut(s)	213, 275, 297, 468, 516, 791
Bso31I	GGTCTC	1 cut(s)	679
Bsp1286I	GDGCHC	2 cut(s)	250, 618
Bsp13I	TCCGGA	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	125, 195, 598
Bsp1720I	GCTNAGC	1 cut(s)	170
BspACI	CCGC	4 cut(s)	176, 225, 256, 269
BspANI	GGCC	6 cut(s)	213, 275, 297, 468, 516, 791
BspCNI	CTCAG	6 cut(s)	22, 162, 336, 421, 553, 782
BspEI	TCCGGA	1 cut(s)	330
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	3 cut(s)	267, 545, 600
BspPI	GGATC	2 cut(s)	593, 606
BspQI	GCTCTTC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	679
BsrFI	RCCGGY	2 cut(s)	271, 275
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	2 cut(s)	271, 275
BssECI	CCNNGG	1 cut(s)	594
BssMI	GATC	3 cut(s)	125, 195, 598
BssT1I	CCWWGG	1 cut(s)	594
Bst4CI	ACNGT	2 cut(s)	283, 382
Bst6I	CTCTTC	1 cut(s)	356
BstC8I	GCNNGC	3 cut(s)	273, 277, 466
BstDEI	CTNAG	7 cut(s)	9, 170, 323, 408, 561, 769, 809
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	176
BstH2I	RGCGCY	1 cut(s)	594
BstHHI	GCGC	2 cut(s)	176, 593
BstKTI	GATC	3 cut(s)	128, 198, 601
BstMAI	GTCTC	3 cut(s)	332, 679, 725
BstMBI	GATC	3 cut(s)	125, 195, 598
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 355
BstSFI	CTRYAG	1 cut(s)	510
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BstZI	CGGCCG	1 cut(s)	273
Bsu36I	CCTNAGG	1 cut(s)	561
BsuI	GTATCC	1 cut(s)	99
BsuRI	GGCC	6 cut(s)	213, 275, 297, 468, 516, 791
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	3 cut(s)	273, 277, 466
CaiI	CAGNNNCTG	1 cut(s)	500
CfoI	GCGC	2 cut(s)	176, 593
Cfr10I	RCCGGY	2 cut(s)	271, 275
Cfr13I	GGNCC	3 cut(s)	212, 404, 543
Csp6I	GTAC	2 cut(s)	59, 378
CviAII	CATG	2 cut(s)	299, 658
CviQI	GTAC	2 cut(s)	59, 378
DdeI	CTNAG	7 cut(s)	9, 170, 323, 408, 561, 769, 809
DpnI	GATC	3 cut(s)	127, 197, 600
DpnII	GATC	3 cut(s)	125, 195, 598
DraI	TTTAAA	1 cut(s)	753
EaeI	YGGCCR	2 cut(s)	273, 295
EagI	CGGCCG	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
EclXI	CGGCCG	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	594
Eco147I	AGGCCT	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	679
Eco47I	GGWCC	2 cut(s)	404, 543
Eco52I	CGGCCG	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	662
Eco81I	CCTNAGG	1 cut(s)	561
EcoO109I	RGGNCCY	1 cut(s)	543
EcoT14I	CCWWGG	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	2 cut(s)	302, 661
FaiI	YATR	9 cut(s)	158, 209, 300, 402, 447, 620, 659, 668, 788
FatI	CATG	2 cut(s)	298, 657
Fnu4HI	GCNGC	3 cut(s)	223, 226, 269
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	3 cut(s)	223, 226, 269
FspBI	CTAG	3 cut(s)	540, 548, 588
GlaI	GCGC	2 cut(s)	175, 592
GluI	GCNGC	3 cut(s)	223, 226, 269
HaeII	RGCGCY	1 cut(s)	594
HaeIII	GGCC	6 cut(s)	213, 275, 297, 468, 516, 791
HapII	CCGG	3 cut(s)	272, 276, 331
HhaI	GCGC	2 cut(s)	176, 593
Hin1II	CATG	2 cut(s)	302, 661
Hin6I	GCGC	2 cut(s)	174, 591
HinP1I	GCGC	2 cut(s)	174, 591
HinfI	GANTC	2 cut(s)	204, 473
HpaII	CCGG	3 cut(s)	272, 276, 331
HphI	GGTGA	2 cut(s)	549, 746
Hpy188I	TCNGA	8 cut(s)	105, 117, 130, 203, 245, 344, 502, 772
Hpy188III	TCNNGA	3 cut(s)	331, 697, 803
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	3 cut(s)	331, 368, 617
HpyCH4III	ACNGT	2 cut(s)	283, 382
HpyCH4IV	ACGT	2 cut(s)	93, 393
HpyCH4V	TGCA	3 cut(s)	386, 464, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 355
HpyF3I	CTNAG	7 cut(s)	9, 170, 323, 408, 561, 769, 809
HpySE526I	ACGT	2 cut(s)	93, 393
Hsp92II	CATG	2 cut(s)	302, 661
HspAI	GCGC	2 cut(s)	174, 591
Kpn2I	TCCGGA	1 cut(s)	330
KroI	GCCGGC	2 cut(s)	271, 275
KroNI	GCCGGC	2 cut(s)	273, 277
Kzo9I	GATC	3 cut(s)	125, 195, 598
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	2 cut(s)	149, 265
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	1 cut(s)	693
MaeI	CTAG	3 cut(s)	540, 548, 588
MaeII	ACGT	2 cut(s)	93, 393
MalI	GATC	3 cut(s)	127, 197, 600
MboI	GATC	3 cut(s)	125, 195, 598
MboII	GAAGA	9 cut(s)	56, 59, 62, 135, 277, 343, 433, 655, 658
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	2 cut(s)	250, 618
MluCI	AATT	2 cut(s)	553, 702
MmeI	TCCRAC	2 cut(s)	181, 322
MroI	TCCGGA	1 cut(s)	330
MroNI	GCCGGC	2 cut(s)	271, 275
MseI	TTAA	3 cut(s)	306, 752, 817
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	3 cut(s)	272, 276, 331
Mva1269I	GAATGC	1 cut(s)	351
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	219, 355
NaeI	GCCGGC	2 cut(s)	273, 277
NdeII	GATC	3 cut(s)	125, 195, 598
NgoMIV	GCCGGC	2 cut(s)	271, 275
NlaIII	CATG	2 cut(s)	302, 661
NlaIV	GGNNCC	3 cut(s)	267, 545, 600
PceI	AGGCCT	1 cut(s)	468
PciSI	GCTCTTC	1 cut(s)	356
PctI	GAATGC	1 cut(s)	351
PdiI	GCCGGC	2 cut(s)	273, 277
PfeI	GAWTC	2 cut(s)	204, 473
PkrI	GCNGC	3 cut(s)	224, 227, 270
PpuMI	RGGWCCY	1 cut(s)	543
Psp1406I	AACGTT	1 cut(s)	393
Psp5II	RGGWCCY	1 cut(s)	543
PspN4I	GGNNCC	3 cut(s)	267, 545, 600
PspPI	GGNCC	3 cut(s)	212, 404, 543
PspPPI	RGGWCCY	1 cut(s)	543
PsrI	GAACNNNNNNTAC	2 cut(s)	481, 513
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	598
RsaI	GTAC	2 cut(s)	60, 379
RsaNI	GTAC	2 cut(s)	59, 378
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	3 cut(s)	306, 752, 817
SatI	GCNGC	3 cut(s)	223, 226, 269
Sau3AI	GATC	3 cut(s)	125, 195, 598
Sau96I	GGNCC	3 cut(s)	212, 404, 543
ScaI	AGTACT	1 cut(s)	60
SduI	GDGCHC	2 cut(s)	250, 618
SfaNI	GCATC	1 cut(s)	693
SfcI	CTRYAG	1 cut(s)	510
SinI	GGWCC	2 cut(s)	404, 543
SmlI	CTYRAG	1 cut(s)	793
SmoI	CTYRAG	1 cut(s)	793
Sse9I	AATT	2 cut(s)	553, 702
SseBI	AGGCCT	1 cut(s)	468
SsiI	CCGC	4 cut(s)	176, 225, 256, 269
SspMI	CTAG	3 cut(s)	540, 548, 588
StuI	AGGCCT	1 cut(s)	468
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	2 cut(s)	283, 382
TaiI	ACGT	2 cut(s)	96, 396
TaqI	TCGA	1 cut(s)	315
TasI	AATT	2 cut(s)	553, 702
TatI	WGTACW	1 cut(s)	58
TauI	GCSGC	2 cut(s)	228, 271
TfiI	GAWTC	2 cut(s)	204, 473
Tru1I	TTAA	3 cut(s)	306, 752, 817
Tru9I	TTAA	3 cut(s)	306, 752, 817
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	3 cut(s)	57, 434, 465
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	404, 543
XcmI	CCANNNNNNNNNTGG	1 cut(s)	784
XspI	CTAG	3 cut(s)	540, 548, 588
ZrmI	AGTACT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.