FvH4_4g06671

ABC transporter I family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014429
Physical Location & Seq
Forward (+)
5991727 .. 5994683
2957 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06671.t1

Sequence Viewer

Length: 819 bp
ATGGCTCCTCAAGCACACATCCCACTTTCAGCAGAAGAGAATGAAGAAGAAGCAGTACTGGTAATCAATGATGGAGAAGCTGACGGCAACGTGAAGTTTCGGATACGAAATCTGACCAGAATATCAGACGGTGCAGGAGGAGGAGGAGGAGCTATCATACTGAATAAGCTGAGCGTGGACATCCCAAAAGGAGTGATCGTCGGAATCATAGGCCCAAGTGGCAGCGGCAAGTCCACTCTTCTCCGAGCACTCAACCGCCTCTGGGAGCCGCCGTACGGCACTGTCTTCTTGGACGGCCATGATATAAAGGACCTCGATGTTCTCAGTCTCCGGAGGAAGGTCGGAATGCTCTTCCAGCTTCCTGTTCTTTTTGAAGGCACTGTTGCAGACAACGTCCGTTATGGTCCTCAGTTGAGTGGGAAGAATCTGAGTGATCAGGACGTTCATAAGCTACTGACCCTTGCAGGCCTTGATTCATCGTTTTTCAGTAAAACTGGTTCTGAACTATCTGTAGGCCAAGCCCAAAGAGTTGCACTTGCTAGGACCCTAGCCAATTCGCCTGAGGTTTTGCTGTTAGACGAGCCTACTAGCGCCTTGGATCCAATATCAACAGAGCACATAGAAGGTGTTTTAGAAAAGCTGAAGAACAAACGGGGCATGACAGTCATAATGGTCTCACACAGCATCAAACAAATCCAGAGGATTGCTGATGTAGTGTGTCTCCTTGTAAACGGTGAGGTTGTTGAAGTTTTGAAACCAGATAAACTCTCAGAAGCCAAGCACCCTATGGCCTTGAGATTTCTTGAACTCAGCTCTTGA

Protein Analysis

273

Amino Acids

29.27

Weight (kDa)

5.73

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 54 - 197 1.1e-33 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014429)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67940
fragaria_vesca FvH4_4g06671 FvH4_4g06671
malus_domestica MD13G1237100.v1.1 MD16G1242500.v1.1
prunus_persica Prupe.1G069500_v2.0.a1
pyrus_communis pycom16g20320 pycom16g20330
rosa_chinensis RchiOBHm_Chr4g0398581
rosa_laevigata RLG00000009342
rosa_roxburghii Rroxscaffold_5G00343550
rosa_rugosa Rorug04G0009500 Rorug04G0009600.1
rosa_samantha Rh4AG087500 Rh4BG084100 Rh4CG095700 Rh4DG079000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 330
AciI CCGC 3 cut(s) 225, 256, 269
AclWI GGATC 2 cut(s) 593, 606
AcoI YGGCCR 1 cut(s) 295
AcuI CTGAAG 1 cut(s) 662
AfaI GTAC 2 cut(s) 57, 275
AfiI CCNNNNNNNGG 3 cut(s) 262, 275, 337
AgsI TTSAA 4 cut(s) 374, 746, 754, 806
AluBI AGCT 7 cut(s) 80, 152, 169, 358, 451, 640, 813
AluI AGCT 7 cut(s) 80, 152, 169, 358, 451, 640, 813
Alw21I GWGCWC 2 cut(s) 250, 618
Alw26I GTCTC 3 cut(s) 332, 679, 725
AlwI GGATC 2 cut(s) 593, 606
Aor13HI TCCGGA 1 cut(s) 330
AoxI GGCC 5 cut(s) 211, 295, 466, 514, 789
ApeKI GCWGC 1 cut(s) 222
AspLEI GCGC 1 cut(s) 593
AspS9I GGNCC 4 cut(s) 212, 310, 404, 543
AsuHPI GGTGA 1 cut(s) 746
AvaII GGWCC 3 cut(s) 310, 404, 543
AxyI CCTNAGG 1 cut(s) 561
BamHI GGATCC 1 cut(s) 598
BarI GAAGNNNNNNTAC 2 cut(s) 39, 71
BbsI GAAGAC 1 cut(s) 277
Bbv12I GWGCWC 2 cut(s) 250, 618
BbvI GCAGC 1 cut(s) 234
BccI CCATC 1 cut(s) 65
BceAI ACGGC 4 cut(s) 100, 256, 292, 310
BciVI GTATCC 1 cut(s) 96
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 3 cut(s) 332, 679, 725
BfaI CTAG 3 cut(s) 540, 548, 588
BfmI CTRYAG 1 cut(s) 510
BfoI RGCGCY 1 cut(s) 594
BfuI GTATCC 1 cut(s) 96
BglI GCCNNNNNGGC 1 cut(s) 219
BisI GCNGC 3 cut(s) 223, 226, 269
BlpI GCTNAGC 1 cut(s) 170
BlsI GCNGC 3 cut(s) 224, 227, 270
BmcAI AGTACT 1 cut(s) 57
Bme18I GGWCC 3 cut(s) 310, 404, 543
BmgT120I GGNCC 4 cut(s) 212, 310, 404, 543
BmiI GGNNCC 4 cut(s) 6, 267, 545, 600
BmsI GCATC 1 cut(s) 693
BpiI GAAGAC 1 cut(s) 277
Bpu1102I GCTNAGC 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 814
BsaI GGTCTC 1 cut(s) 679
BsaJI CCNNGG 1 cut(s) 594
BsaWI WCCGGW 1 cut(s) 330
BsaXI ACNNNNNCTCC 4 cut(s) 183, 213, 257, 287
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 275, 337
Bse1I ACTGG 2 cut(s) 63, 499
Bse21I CCTNAGG 1 cut(s) 561
BseAI TCCGGA 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 594
BseGI GGATG 2 cut(s) 18, 180
BseLI CCNNNNNNNGG 3 cut(s) 262, 275, 337
BseMII CTCAG 6 cut(s) 161, 337, 419, 422, 552, 783
BseNI ACTGG 2 cut(s) 63, 499
BseRI GAGGAG 4 cut(s) 153, 156, 159, 162
BseXI GCAGC 1 cut(s) 234
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 5 cut(s) 213, 297, 468, 516, 791
BsiHKAI GWGCWC 2 cut(s) 250, 618
BsiSI CCGG 1 cut(s) 331
BsiWI CGTACG 1 cut(s) 273
BslI CCNNNNNNNGG 3 cut(s) 262, 275, 337
BsmAI GTCTC 3 cut(s) 332, 679, 725
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 5 cut(s) 213, 297, 468, 516, 791
Bso31I GGTCTC 1 cut(s) 679
Bsp1286I GDGCHC 2 cut(s) 250, 618
Bsp13I TCCGGA 1 cut(s) 330
Bsp143I GATC 3 cut(s) 195, 433, 598
Bsp1720I GCTNAGC 1 cut(s) 170
BspACI CCGC 3 cut(s) 225, 256, 269
BspANI GGCC 5 cut(s) 213, 297, 468, 516, 791
BspCNI CTCAG 6 cut(s) 162, 336, 420, 421, 553, 782
BspEI TCCGGA 1 cut(s) 330
BspLI GGNNCC 4 cut(s) 6, 267, 545, 600
BspPI GGATC 2 cut(s) 593, 606
BspQI GCTCTTC 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 679
BsrI ACTGG 2 cut(s) 63, 499
BssECI CCNNGG 1 cut(s) 594
BssMI GATC 3 cut(s) 195, 433, 598
BssT1I CCWWGG 1 cut(s) 594
Bst4CI ACNGT 5 cut(s) 131, 283, 382, 664, 734
Bst6I CTCTTC 3 cut(s) 30, 243, 356
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 7 cut(s) 170, 323, 408, 428, 561, 769, 809
BstF5I GGATG 2 cut(s) 18, 180
BstH2I RGCGCY 1 cut(s) 594
BstHHI GCGC 1 cut(s) 593
BstKTI GATC 3 cut(s) 198, 436, 601
BstMAI GTCTC 3 cut(s) 332, 679, 725
BstMBI GATC 3 cut(s) 195, 433, 598
BstMWI GCNNNNNNNGC 3 cut(s) 11, 219, 355
BstSFI CTRYAG 1 cut(s) 510
BstV1I GCAGC 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 277
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
Bsu36I CCTNAGG 1 cut(s) 561
BsuI GTATCC 1 cut(s) 96
BsuRI GGCC 5 cut(s) 213, 297, 468, 516, 791
BtsCI GGATG 2 cut(s) 18, 180
BtsIMutI CAGTG 2 cut(s) 279, 378
Cac8I GCNNGC 1 cut(s) 466
CfoI GCGC 1 cut(s) 593
Cfr13I GGNCC 4 cut(s) 212, 310, 404, 543
Csp6I GTAC 2 cut(s) 56, 274
CviAII CATG 2 cut(s) 299, 658
CviQI GTAC 2 cut(s) 56, 274
DdeI CTNAG 7 cut(s) 170, 323, 408, 428, 561, 769, 809
DpnI GATC 3 cut(s) 197, 435, 600
DpnII GATC 3 cut(s) 195, 433, 598
EaeI YGGCCR 1 cut(s) 295
Eam1104I CTCTTC 3 cut(s) 30, 243, 356
EarI CTCTTC 3 cut(s) 30, 243, 356
Eco130I CCWWGG 1 cut(s) 594
Eco147I AGGCCT 1 cut(s) 468
Eco31I GGTCTC 1 cut(s) 679
Eco47I GGWCC 3 cut(s) 310, 404, 543
Eco57I CTGAAG 1 cut(s) 662
Eco81I CCTNAGG 1 cut(s) 561
EcoO109I RGGNCCY 2 cut(s) 310, 543
EcoT14I CCWWGG 1 cut(s) 594
ErhI CCWWGG 1 cut(s) 594
FaeI CATG 2 cut(s) 302, 661
FatI CATG 2 cut(s) 298, 657
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 3 cut(s) 223, 226, 269
FokI GGATG 2 cut(s) 5, 167
Fsp4HI GCNGC 3 cut(s) 223, 226, 269
FspBI CTAG 3 cut(s) 540, 548, 588
GlaI GCGC 1 cut(s) 592
GluI GCNGC 3 cut(s) 223, 226, 269
HaeII RGCGCY 1 cut(s) 594
HaeIII GGCC 5 cut(s) 213, 297, 468, 516, 791
HapII CCGG 1 cut(s) 331
HhaI GCGC 1 cut(s) 593
Hin1II CATG 2 cut(s) 302, 661
Hin6I GCGC 1 cut(s) 591
HinP1I GCGC 1 cut(s) 591
HinfI GANTC 3 cut(s) 204, 424, 473
HpaII CCGG 1 cut(s) 331
HphI GGTGA 1 cut(s) 746
Hpy166II GTNNAC 3 cut(s) 178, 234, 730
Hpy188I TCNGA 9 cut(s) 102, 114, 127, 203, 245, 344, 429, 502, 772
Hpy188III TCNNGA 5 cut(s) 331, 437, 697, 803, 816
Hpy8I GTNNAC 3 cut(s) 178, 234, 730
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 3 cut(s) 331, 368, 617
HpyCH4III ACNGT 5 cut(s) 131, 283, 382, 664, 734
HpyCH4IV ACGT 3 cut(s) 90, 393, 441
HpyCH4V TGCA 4 cut(s) 134, 386, 464, 533
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 219, 355
HpyF3I CTNAG 7 cut(s) 170, 323, 408, 428, 561, 769, 809
HpySE526I ACGT 3 cut(s) 90, 393, 441
Hsp92II CATG 2 cut(s) 302, 661
HspAI GCGC 1 cut(s) 591
Kpn2I TCCGGA 1 cut(s) 330
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 3 cut(s) 195, 433, 598
LguI GCTCTTC 1 cut(s) 356
LmnI GCTCC 3 cut(s) 10, 149, 265
Lsp1109I GCAGC 1 cut(s) 234
LweI GCATC 1 cut(s) 693
MaeI CTAG 3 cut(s) 540, 548, 588
MaeII ACGT 3 cut(s) 90, 393, 441
MalI GATC 3 cut(s) 197, 435, 600
MboI GATC 3 cut(s) 195, 433, 598
MboII GAAGA 8 cut(s) 47, 56, 59, 230, 277, 343, 433, 655
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 2 cut(s) 250, 618
MluCI AATT 1 cut(s) 553
MmeI TCCRAC 2 cut(s) 181, 322
MroI TCCGGA 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 225
MspI CCGG 1 cut(s) 331
Mva1269I GAATGC 1 cut(s) 351
MwoI GCNNNNNNNGC 3 cut(s) 11, 219, 355
NdeII GATC 3 cut(s) 195, 433, 598
NlaIII CATG 2 cut(s) 302, 661
NlaIV GGNNCC 4 cut(s) 6, 267, 545, 600
PceI AGGCCT 1 cut(s) 468
PciSI GCTCTTC 1 cut(s) 356
PctI GAATGC 1 cut(s) 351
PfeI GAWTC 3 cut(s) 204, 424, 473
Pfl23II CGTACG 1 cut(s) 273
PflFI GACNNNGTC 1 cut(s) 392
PkrI GCNGC 3 cut(s) 224, 227, 270
PpuMI RGGWCCY 2 cut(s) 310, 543
Psp5II RGGWCCY 2 cut(s) 310, 543
PspLI CGTACG 1 cut(s) 273
PspN4I GGNNCC 4 cut(s) 6, 267, 545, 600
PspPI GGNCC 4 cut(s) 212, 310, 404, 543
PspPPI RGGWCCY 2 cut(s) 310, 543
PsrI GAACNNNNNNTAC 2 cut(s) 481, 513
PsuI RGATCY 1 cut(s) 598
PsyI GACNNNGTC 1 cut(s) 392
RsaI GTAC 2 cut(s) 57, 275
RsaNI GTAC 2 cut(s) 56, 274
SapI GCTCTTC 1 cut(s) 356
SatI GCNGC 3 cut(s) 223, 226, 269
Sau3AI GATC 3 cut(s) 195, 433, 598
Sau96I GGNCC 4 cut(s) 212, 310, 404, 543
ScaI AGTACT 1 cut(s) 57
SduI GDGCHC 2 cut(s) 250, 618
SfaNI GCATC 1 cut(s) 693
SfcI CTRYAG 1 cut(s) 510
SinI GGWCC 3 cut(s) 310, 404, 543
SmlI CTYRAG 2 cut(s) 9, 793
SmoI CTYRAG 2 cut(s) 9, 793
Sse9I AATT 1 cut(s) 553
SseBI AGGCCT 1 cut(s) 468
SsiI CCGC 3 cut(s) 225, 256, 269
SspMI CTAG 3 cut(s) 540, 548, 588
StuI AGGCCT 1 cut(s) 468
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 5 cut(s) 131, 283, 382, 664, 734
TaiI ACGT 3 cut(s) 93, 396, 444
TaqI TCGA 1 cut(s) 315
TasI AATT 1 cut(s) 553
TatI WGTACW 1 cut(s) 55
TauI GCSGC 2 cut(s) 228, 271
TfiI GAWTC 3 cut(s) 204, 424, 473
TscAI CASTG 2 cut(s) 286, 385
TseI GCWGC 1 cut(s) 222
TspDTI ATGAA 3 cut(s) 57, 434, 465
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 2 cut(s) 286, 385
Tth111I GACNNNGTC 1 cut(s) 392
VpaK11BI GGWCC 3 cut(s) 310, 404, 543
XcmI CCANNNNNNNNNTGG 1 cut(s) 784
XspI CTAG 3 cut(s) 540, 548, 588
ZrmI AGTACT 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.