Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014429

Physical Location & Seq

Genomic Coordinates Forward (+)

11714749 .. 11718092

Gene Structure 3344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG079000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGACTTCTCAGGCACACATCACTCTTTCAGCAGAGGAGAATGAAGAAGAAGAAGCAGTACTGGTAATCAATGATGGAGAAGCTGATGGCAACGTGAAGTTTCGGATACGAAATCTGACCAGAAGATCAGAAAGTACAGGAGGAGGAGCTATCATACTGAATAAGCTGAGCGTGGACATCCCAAAAGGAGTGATCGTTGGAATCATAGGCCCAAGTGGCAGCGGCAAATCCACGCTTCTCCGAGCACTCAACCGCCTCTGGGAGCCGCCGGCCGGCACTGTCTTCTTGGACGGCCATGATATTAAAGAACTCGATGTTCTCAGTCTCCGGAGGAAGGTCGGAATGCTCTTCCAGCTTCCTGTTCTTTTTGAAGGTACTGTTGCAGACAACGTTCGTTATGGTCCTCAGTTGAGTGGGAAGAAGCTGACTGATCAAGATGTTCATAAGCTACTGACCCTTGCAGGCCTTGATTCATCTTTTTTCAGTAAAACAGGTTCTGAAATATCTGTAGGCCAAGCCCAAAGAGTTGCACTTGCTAGGACCCTAGCCAATTCACCTGAGGTTTTGCTGTTAGACGAGCCTACTAGCGCCTTGGATCCAATATCAACAGAGCACATAGAAGGTGTTTTAGAAAAGCTGAAGAAGAAACGGGGCATGACAATCATAATGGTCTCACACAGCATCAAACAAATCCAGAGAATTGCTGATGTAGTGTGTCTCCTTGTGAATGGTGAGGTTGTTGAAGTTTTAAAACCAGATAAACTCTCAGAAGCCAAGCACCCTATGGCCTTGAGGTTTCTTGAACTCAGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0010035 GO:0010038 GO:0010044 GO:0012506 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0031090 GO:0031982 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0090481 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

271

Amino Acids

29.4

Weight (kDa)

6.11

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	53 - 196	1.4e-33	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67940
fragaria_vesca	FvH4_4g06671 FvH4_4g06671
malus_domestica	MD13G1237100.v1.1 MD16G1242500.v1.1
prunus_persica	Prupe.1G069500_v2.0.a1
pyrus_communis	pycom16g20320 pycom16g20330
rosa_chinensis	RchiOBHm_Chr4g0398581
rosa_laevigata	RLG00000009342
rosa_roxburghii	Rroxscaffold_5G00343550
rosa_rugosa	Rorug04G0009500 Rorug04G0009600.1
rosa_samantha	Rh4AG087500 Rh4BG084100 Rh4CG095700 Rh4DG079000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	327
AciI	CCGC	3 cut(s)	222, 253, 266
AclI	AACGTT	1 cut(s)	390
AclWI	GGATC	2 cut(s)	590, 603
AcoI	YGGCCR	2 cut(s)	270, 292
AcuI	CTGAAG	1 cut(s)	659
AfaI	GTAC	3 cut(s)	60, 136, 376
AfiI	CCNNNNNNNGG	3 cut(s)	259, 272, 334
AgsI	TTSAA	3 cut(s)	371, 743, 803
AluBI	AGCT	8 cut(s)	83, 149, 166, 355, 424, 448, 637, 810
AluI	AGCT	8 cut(s)	83, 149, 166, 355, 424, 448, 637, 810
Alw21I	GWGCWC	2 cut(s)	247, 615
Alw26I	GTCTC	3 cut(s)	329, 676, 722
AlwI	GGATC	2 cut(s)	590, 603
AlwNI	CAGNNNCTG	1 cut(s)	497
Aor13HI	TCCGGA	1 cut(s)	327
AoxI	GGCC	6 cut(s)	208, 270, 292, 463, 511, 786
ApeKI	GCWGC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	590
AspS9I	GGNCC	3 cut(s)	209, 401, 540
AsuHPI	GGTGA	2 cut(s)	546, 743
AvaII	GGWCC	2 cut(s)	401, 540
AxyI	CCTNAGG	1 cut(s)	558
BamHI	GGATCC	1 cut(s)	595
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
BbsI	GAAGAC	1 cut(s)	274
Bbv12I	GWGCWC	2 cut(s)	247, 615
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	2 cut(s)	68, 80
BceAI	ACGGC	1 cut(s)	307
BciVI	GTATCC	1 cut(s)	99
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	3 cut(s)	329, 676, 722
BfaI	CTAG	3 cut(s)	537, 545, 585
BfmI	CTRYAG	1 cut(s)	507
BfoI	RGCGCY	1 cut(s)	591
BfuI	GTATCC	1 cut(s)	99
BglI	GCCNNNNNGGC	1 cut(s)	216
BisI	GCNGC	3 cut(s)	220, 223, 266
BlpI	GCTNAGC	1 cut(s)	167
BlsI	GCNGC	3 cut(s)	221, 224, 267
BmcAI	AGTACT	1 cut(s)	60
Bme18I	GGWCC	2 cut(s)	401, 540
BmgT120I	GGNCC	3 cut(s)	209, 401, 540
BmiI	GGNNCC	3 cut(s)	264, 542, 597
BmsI	GCATC	1 cut(s)	690
BpiI	GAAGAC	1 cut(s)	274
Bpu1102I	GCTNAGC	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	811
BsaI	GGTCTC	1 cut(s)	676
BsaJI	CCNNGG	1 cut(s)	591
BsaWI	WCCGGW	1 cut(s)	327
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 272, 334
Bse118I	RCCGGY	2 cut(s)	268, 272
Bse1I	ACTGG	1 cut(s)	66
Bse21I	CCTNAGG	1 cut(s)	558
BseAI	TCCGGA	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	3 cut(s)	259, 272, 334
BseMII	CTCAG	6 cut(s)	23, 158, 334, 419, 549, 780
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	3 cut(s)	50, 156, 159
BseX3I	CGGCCG	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	6 cut(s)	210, 272, 294, 465, 513, 788
BsiEI	CGRYCG	1 cut(s)	273
BsiHKAI	GWGCWC	2 cut(s)	247, 615
BsiSI	CCGG	3 cut(s)	269, 273, 328
BslI	CCNNNNNNNGG	3 cut(s)	259, 272, 334
BsmAI	GTCTC	3 cut(s)	329, 676, 722
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	6 cut(s)	210, 272, 294, 465, 513, 788
Bso31I	GGTCTC	1 cut(s)	676
Bsp1286I	GDGCHC	2 cut(s)	247, 615
Bsp13I	TCCGGA	1 cut(s)	327
Bsp143I	GATC	4 cut(s)	125, 192, 430, 595
Bsp1720I	GCTNAGC	1 cut(s)	167
BspACI	CCGC	3 cut(s)	222, 253, 266
BspANI	GGCC	6 cut(s)	210, 272, 294, 465, 513, 788
BspCNI	CTCAG	6 cut(s)	22, 159, 333, 418, 550, 779
BspEI	TCCGGA	1 cut(s)	327
BspLI	GGNNCC	3 cut(s)	264, 542, 597
BspPI	GGATC	2 cut(s)	590, 603
BspQI	GCTCTTC	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	676
BsrFI	RCCGGY	2 cut(s)	268, 272
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	2 cut(s)	268, 272
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	4 cut(s)	125, 192, 430, 595
BssT1I	CCWWGG	1 cut(s)	591
Bst4CI	ACNGT	2 cut(s)	280, 379
Bst6I	CTCTTC	1 cut(s)	353
BstC8I	GCNNGC	3 cut(s)	270, 274, 463
BstDEI	CTNAG	8 cut(s)	9, 167, 320, 405, 558, 766, 806, 813
BstF5I	GGATG	1 cut(s)	177
BstH2I	RGCGCY	1 cut(s)	591
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	4 cut(s)	128, 195, 433, 598
BstMAI	GTCTC	3 cut(s)	329, 676, 722
BstMBI	GATC	4 cut(s)	125, 192, 430, 595
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	2 cut(s)	216, 352
BstSFI	CTRYAG	1 cut(s)	507
BstV1I	GCAGC	1 cut(s)	231
BstV2I	GAAGAC	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BstZI	CGGCCG	1 cut(s)	270
Bsu36I	CCTNAGG	1 cut(s)	558
BsuI	GTATCC	1 cut(s)	99
BsuRI	GGCC	6 cut(s)	210, 272, 294, 465, 513, 788
BtsCI	GGATG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	3 cut(s)	270, 274, 463
CaiI	CAGNNNCTG	1 cut(s)	497
CfoI	GCGC	1 cut(s)	590
Cfr10I	RCCGGY	2 cut(s)	268, 272
Cfr13I	GGNCC	3 cut(s)	209, 401, 540
Csp6I	GTAC	3 cut(s)	59, 135, 375
CviAII	CATG	2 cut(s)	296, 655
CviQI	GTAC	3 cut(s)	59, 135, 375
DdeI	CTNAG	8 cut(s)	9, 167, 320, 405, 558, 766, 806, 813
DpnI	GATC	4 cut(s)	127, 194, 432, 597
DpnII	GATC	4 cut(s)	125, 192, 430, 595
DraI	TTTAAA	1 cut(s)	750
EaeI	YGGCCR	2 cut(s)	270, 292
EagI	CGGCCG	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
EclXI	CGGCCG	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	591
Eco147I	AGGCCT	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	676
Eco47I	GGWCC	2 cut(s)	401, 540
Eco52I	CGGCCG	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	659
Eco81I	CCTNAGG	1 cut(s)	558
EcoO109I	RGGNCCY	1 cut(s)	540
EcoT14I	CCWWGG	1 cut(s)	591
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	2 cut(s)	299, 658
FaiI	YATR	9 cut(s)	155, 206, 297, 399, 444, 617, 656, 665, 785
FatI	CATG	2 cut(s)	295, 654
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	3 cut(s)	220, 223, 266
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	3 cut(s)	220, 223, 266
FspBI	CTAG	3 cut(s)	537, 545, 585
GlaI	GCGC	1 cut(s)	589
GluI	GCNGC	3 cut(s)	220, 223, 266
HaeII	RGCGCY	1 cut(s)	591
HaeIII	GGCC	6 cut(s)	210, 272, 294, 465, 513, 788
HapII	CCGG	3 cut(s)	269, 273, 328
HhaI	GCGC	1 cut(s)	590
Hin1II	CATG	2 cut(s)	299, 658
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HinfI	GANTC	2 cut(s)	201, 470
HpaII	CCGG	3 cut(s)	269, 273, 328
HphI	GGTGA	2 cut(s)	546, 743
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	7 cut(s)	105, 117, 130, 242, 341, 499, 769
Hpy188III	TCNNGA	4 cut(s)	328, 434, 694, 800
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	3 cut(s)	328, 365, 614
HpyCH4III	ACNGT	2 cut(s)	280, 379
HpyCH4IV	ACGT	2 cut(s)	93, 390
HpyCH4V	TGCA	3 cut(s)	383, 461, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	216, 352
HpyF3I	CTNAG	8 cut(s)	9, 167, 320, 405, 558, 766, 806, 813
HpySE526I	ACGT	2 cut(s)	93, 390
Hsp92II	CATG	2 cut(s)	299, 658
HspAI	GCGC	1 cut(s)	588
Kpn2I	TCCGGA	1 cut(s)	327
KroI	GCCGGC	2 cut(s)	268, 272
KroNI	GCCGGC	2 cut(s)	270, 274
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	4 cut(s)	125, 192, 430, 595
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	2 cut(s)	146, 262
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	1 cut(s)	690
MaeI	CTAG	3 cut(s)	537, 545, 585
MaeII	ACGT	2 cut(s)	93, 390
MalI	GATC	4 cut(s)	127, 194, 432, 597
MboI	GATC	4 cut(s)	125, 192, 430, 595
MboII	GAAGA	9 cut(s)	56, 59, 62, 135, 274, 340, 430, 652, 655
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	2 cut(s)	247, 615
MluCI	AATT	2 cut(s)	550, 699
MmeI	TCCRAC	2 cut(s)	178, 319
MnlI	CCTC	9 cut(s)	28, 134, 137, 266, 324, 414, 553, 727, 786
MroI	TCCGGA	1 cut(s)	327
MroNI	GCCGGC	2 cut(s)	268, 272
MseI	TTAA	2 cut(s)	303, 749
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	3 cut(s)	269, 273, 328
Mva1269I	GAATGC	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	216, 352
NaeI	GCCGGC	2 cut(s)	270, 274
NdeII	GATC	4 cut(s)	125, 192, 430, 595
NgoMIV	GCCGGC	2 cut(s)	268, 272
NlaIII	CATG	2 cut(s)	299, 658
NlaIV	GGNNCC	3 cut(s)	264, 542, 597
PceI	AGGCCT	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	353
PctI	GAATGC	1 cut(s)	348
PdiI	GCCGGC	2 cut(s)	270, 274
PfeI	GAWTC	2 cut(s)	201, 470
PkrI	GCNGC	3 cut(s)	221, 224, 267
PpuMI	RGGWCCY	1 cut(s)	540
Psp1406I	AACGTT	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	540
PspN4I	GGNNCC	3 cut(s)	264, 542, 597
PspPI	GGNCC	3 cut(s)	209, 401, 540
PspPPI	RGGWCCY	1 cut(s)	540
PsrI	GAACNNNNNNTAC	2 cut(s)	478, 510
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	595
RsaI	GTAC	3 cut(s)	60, 136, 376
RsaNI	GTAC	3 cut(s)	59, 135, 375
SapI	GCTCTTC	1 cut(s)	353
SaqAI	TTAA	2 cut(s)	303, 749
SatI	GCNGC	3 cut(s)	220, 223, 266
Sau3AI	GATC	4 cut(s)	125, 192, 430, 595
Sau96I	GGNCC	3 cut(s)	209, 401, 540
ScaI	AGTACT	1 cut(s)	60
SduI	GDGCHC	2 cut(s)	247, 615
SfaNI	GCATC	1 cut(s)	690
SfcI	CTRYAG	1 cut(s)	507
SinI	GGWCC	2 cut(s)	401, 540
SmlI	CTYRAG	1 cut(s)	790
SmoI	CTYRAG	1 cut(s)	790
Sse9I	AATT	2 cut(s)	550, 699
SseBI	AGGCCT	1 cut(s)	465
SsiI	CCGC	3 cut(s)	222, 253, 266
SspMI	CTAG	3 cut(s)	537, 545, 585
StuI	AGGCCT	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	2 cut(s)	280, 379
TaiI	ACGT	2 cut(s)	96, 393
TaqI	TCGA	1 cut(s)	312
TasI	AATT	2 cut(s)	550, 699
TatI	WGTACW	2 cut(s)	58, 134
TauI	GCSGC	2 cut(s)	225, 268
TfiI	GAWTC	2 cut(s)	201, 470
Tru1I	TTAA	2 cut(s)	303, 749
Tru9I	TTAA	2 cut(s)	303, 749
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	1 cut(s)	219
TspDTI	ATGAA	3 cut(s)	57, 431, 462
TspRI	CASTG	1 cut(s)	283
VpaK11BI	GGWCC	2 cut(s)	401, 540
XcmI	CCANNNNNNNNNTGG	1 cut(s)	781
XspI	CTAG	3 cut(s)	537, 545, 585
ZrmI	AGTACT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.