AT1G67950

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010838
Physical Location & Seq
Reverse (-)
25478713 .. 25480580
1868 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G67950.1

Sequence Viewer

Length: 837 bp
ATGTCGGTAACGGCTGCTTTCATTGATTCGGATCAAACTCAGCACAACATTCTTATGGATTCCCAATCAACTGTCTCCGGTGTGAAAACTGTCAAGATTAGCAATGTTTCACTAATTGTTTCTAAGAAAGATGTCAAAGAGTTCTTTTCTTTCTCTGGTGACATTCAATACGTCGAGATGCGAAGTGAGACACAAGAGAGTCAGGTCGCATATGTTACTTTTAAGGATTCACAAGGAGCTGAAACTGCAATGCTCTTAACGGGAGCTGTCATTGCAGATCTTCGTGTTAGTATAACTCCTGCTGTTAACTATCAGCTACCACCAGAAGCCCTTGCACTTGACTCGGAACATTCGTTTAATGGTTTTTCTGTCAAGAAAGCTGAAGATGTGGTGAACATCATGGTGGGAAGAGGTTATGCTCTTGGAAAAGACGCCATGGAGAAAGCCAAAGCATTTGATGACAGACACAACTTGATCTCAAACGCTTCTGCAACCATTGCATCGCTTGACGATAAGATGGGTCTGAGCGAAAAGCTAAGCATAGGAACAACTGTGGTTAATGAGAAGTTGAGAGATATCGATGAGCGATATCAGGTGAGGGAGATAACGAAATCTGCTTTAGCAGCTGCTGAAGAGACAGCAATCAGTGCAAGAACGGCTTTAATGGCAAACCCTTATGTATCAAGTGGAGCTTCGTGGTTTTCAAACGCGTTTGGCGCAGTGACAAAGGCGGTTAAAGAGAAAGTTGAGAATGGAGGAGAAGGAAGAAAGGAGATCATCACACTTGATCCCTCTTCACCCAAAGTTCCTGCTGTAGTTCCTGTTAAGCTCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

278

Amino Acids

29.88

Weight (kDa)

5.27

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 33 - 92 3.7e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010838)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67950 AT1G67950 AT1G67950 AT1G67950
fragaria_vesca FvH4_4g33260
malus_domestica MD13G1017900.v1.1 MD16G1015900.v1.1
prunus_persica Prupe.1G335700_v2.0.a1
pyrus_communis pycom13g01530 pycom16g01480
rosa_chinensis RchiOBHm_Chr4g0442411
rosa_laevigata RLG00000006012
rosa_multiflora Rmu_ssc0000204.1_g000062
rosa_roxburghii Rroxscaffold_5G00383250
rosa_rugosa Rorug04G0340900
rosa_samantha Rh4AG392600 Rh4BG406200 Rh4CG421400 Rh4DG399400
rosa_wichuraiana Rw4G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 710
AciI CCGC 1 cut(s) 731
AclWI GGATC 2 cut(s) 39, 782
AcuI CTGAAG 2 cut(s) 402, 651
AcyI GRCGYC 1 cut(s) 432
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 2 cut(s) 167, 705
AluBI AGCT 8 cut(s) 239, 266, 316, 380, 535, 626, 692, 829
AluI AGCT 8 cut(s) 239, 266, 316, 380, 535, 626, 692, 829
Alw26I GTCTC 3 cut(s) 79, 182, 629
AlwI GGATC 2 cut(s) 39, 782
AlwNI CAGNNNCTG 1 cut(s) 629
ApeKI GCWGC 3 cut(s) 14, 623, 626
AspLEI GCGC 1 cut(s) 719
AsuHPI GGTGA 4 cut(s) 170, 403, 607, 789
BbvI GCAGC 2 cut(s) 613, 635
BccI CCATC 1 cut(s) 511
BceAI ACGGC 2 cut(s) 27, 672
BcgI CGANNNNNNTGC 2 cut(s) 324, 358
BcoDI GTCTC 3 cut(s) 79, 182, 629
BfmI CTRYAG 1 cut(s) 813
BglII AGATCT 1 cut(s) 277
BisI GCNGC 3 cut(s) 15, 624, 627
BlpI GCTNAGC 1 cut(s) 536
BlsI GCNGC 3 cut(s) 16, 625, 628
BmsI GCATC 2 cut(s) 168, 509
Bpu1102I GCTNAGC 1 cut(s) 536
Bsa29I ATCGAT 1 cut(s) 579
BsaBI GATNNNNATC 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 432
BsaJI CCNNGG 1 cut(s) 435
BsaWI WCCGGW 1 cut(s) 77
Bse3DI GCAATG 4 cut(s) 109, 255, 270, 495
Bse8I GATNNNNATC 1 cut(s) 30
BseCI ATCGAT 1 cut(s) 579
BseDI CCNNGG 1 cut(s) 435
BseJI GATNNNNATC 1 cut(s) 30
BseMI GCAATG 4 cut(s) 109, 255, 270, 495
BseMII CTCAG 2 cut(s) 53, 515
BseRI GAGGAG 1 cut(s) 771
BseXI GCAGC 2 cut(s) 613, 635
Bsh1236I CGCG 1 cut(s) 710
BshVI ATCGAT 1 cut(s) 579
BsiSI CCGG 1 cut(s) 78
BsmAI GTCTC 3 cut(s) 79, 182, 629
Bsp143I GATC 5 cut(s) 31, 277, 474, 774, 787
Bsp1720I GCTNAGC 1 cut(s) 536
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 1 cut(s) 731
BspCNI CTCAG 2 cut(s) 52, 516
BspDI ATCGAT 1 cut(s) 579
BspFNI CGCG 1 cut(s) 710
BspPI GGATC 2 cut(s) 39, 782
BsrDI GCAATG 4 cut(s) 109, 255, 270, 495
BssECI CCNNGG 1 cut(s) 435
BssMI GATC 5 cut(s) 31, 277, 474, 774, 787
BssNI GRCGYC 1 cut(s) 432
BssT1I CCWWGG 1 cut(s) 435
Bst4CI ACNGT 3 cut(s) 73, 91, 553
Bst6I CTCTTC 3 cut(s) 403, 627, 799
BstACI GRCGYC 1 cut(s) 432
BstAPI GCANNNNNTGC 2 cut(s) 497, 647
BstDEI CTNAG 4 cut(s) 39, 123, 524, 536
BstDSI CCRYGG 1 cut(s) 435
BstFNI CGCG 1 cut(s) 710
BstHHI GCGC 1 cut(s) 719
BstKTI GATC 5 cut(s) 34, 280, 477, 777, 790
BstMAI GTCTC 3 cut(s) 79, 182, 629
BstMBI GATC 5 cut(s) 31, 277, 474, 774, 787
BstMWI GCNNNNNNNGC 8 cut(s) 245, 272, 497, 623, 647, 656, 665, 716
BstSFI CTRYAG 1 cut(s) 813
BstUI CGCG 1 cut(s) 710
BstV1I GCAGC 2 cut(s) 613, 635
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
Bsu15I ATCGAT 1 cut(s) 579
BsuTUI ATCGAT 1 cut(s) 579
BtgI CCRYGG 1 cut(s) 435
BtgZI GCGATG 1 cut(s) 486
BtsI GCAGTG 1 cut(s) 726
BtsIMutI CAGTG 2 cut(s) 652, 726
CaiI CAGNNNCTG 1 cut(s) 629
CfoI GCGC 1 cut(s) 719
ClaI ATCGAT 1 cut(s) 579
CseI GACGC 1 cut(s) 440
CviAII CATG 2 cut(s) 400, 436
DdeI CTNAG 4 cut(s) 39, 123, 524, 536
DpnI GATC 5 cut(s) 33, 279, 476, 776, 789
DpnII GATC 5 cut(s) 31, 277, 474, 774, 787
Eam1104I CTCTTC 3 cut(s) 403, 627, 799
EarI CTCTTC 3 cut(s) 403, 627, 799
Eco130I CCWWGG 1 cut(s) 435
Eco32I GATATC 2 cut(s) 577, 590
Eco57I CTGAAG 2 cut(s) 402, 651
EcoRV GATATC 2 cut(s) 577, 590
EcoT14I CCWWGG 1 cut(s) 435
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 2 cut(s) 403, 439
FaiI YATR 9 cut(s) 56, 211, 213, 293, 401, 417, 437, 542, 678
FalI AAGNNNNNCTT 4 cut(s) 643, 675, 676, 708
FatI CATG 2 cut(s) 399, 435
FauNDI CATATG 1 cut(s) 211
Fnu4HI GCNGC 3 cut(s) 15, 624, 627
Fsp4HI GCNGC 3 cut(s) 15, 624, 627
GlaI GCGC 1 cut(s) 718
GluI GCNGC 3 cut(s) 15, 624, 627
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 440
HhaI GCGC 1 cut(s) 719
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 2 cut(s) 403, 439
Hin6I GCGC 1 cut(s) 717
HinP1I GCGC 1 cut(s) 717
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 5 cut(s) 26, 59, 199, 227, 341
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 1 cut(s) 78
HphI GGTGA 4 cut(s) 170, 403, 607, 789
Hpy166II GTNNAC 2 cut(s) 307, 394
Hpy188I TCNGA 3 cut(s) 31, 346, 525
Hpy188III TCNNGA 3 cut(s) 94, 175, 373
Hpy8I GTNNAC 2 cut(s) 307, 394
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 755
HpyCH4III ACNGT 3 cut(s) 73, 91, 553
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 6 cut(s) 248, 275, 335, 491, 500, 650
HpyF10VI GCNNNNNNNGC 8 cut(s) 245, 272, 497, 623, 647, 656, 665, 716
HpyF3I CTNAG 4 cut(s) 39, 123, 524, 536
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 2 cut(s) 403, 439
HspAI GCGC 1 cut(s) 717
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 5 cut(s) 31, 277, 474, 774, 787
LmnI GCTCC 3 cut(s) 236, 263, 689
LpnPI CCDG 7 cut(s) 91, 141, 188, 312, 336, 578, 822
Lsp1109I GCAGC 2 cut(s) 613, 635
LweI GCATC 2 cut(s) 168, 509
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 4 cut(s) 7, 158, 214, 721
MalI GATC 5 cut(s) 33, 279, 476, 776, 789
MboI GATC 5 cut(s) 31, 277, 474, 774, 787
MboII GAAGA 6 cut(s) 272, 395, 420, 644, 777, 786
MflI RGATCY 1 cut(s) 277
MluCI AATT 1 cut(s) 114
MluI ACGCGT 1 cut(s) 708
MlyI GAGTC 2 cut(s) 208, 335
MnlI CCTC 4 cut(s) 404, 591, 749, 802
MseI TTAA 8 cut(s) 222, 257, 306, 357, 558, 662, 735, 825
MslI CAYNNNNRTG 2 cut(s) 53, 401
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 710
MwoI GCNNNNNNNGC 8 cut(s) 245, 272, 497, 623, 647, 656, 665, 716
NcoI CCATGG 1 cut(s) 435
NdeI CATATG 1 cut(s) 211
NdeII GATC 5 cut(s) 31, 277, 474, 774, 787
NlaIII CATG 2 cut(s) 403, 439
NmuCI GTSAC 2 cut(s) 158, 721
PcsI WCGNNNNNNNCGW 1 cut(s) 350
PfeI GAWTC 3 cut(s) 26, 59, 227
PkrI GCNGC 3 cut(s) 16, 625, 628
PleI GAGTC 2 cut(s) 207, 335
PpsI GAGTC 2 cut(s) 207, 335
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 626
RseI CAYNNNNRTG 2 cut(s) 53, 401
SaqAI TTAA 8 cut(s) 222, 257, 306, 357, 558, 662, 735, 825
SatI GCNGC 3 cut(s) 15, 624, 627
Sau3AI GATC 5 cut(s) 31, 277, 474, 774, 787
SchI GAGTC 2 cut(s) 208, 335
SfaNI GCATC 2 cut(s) 168, 509
SfcI CTRYAG 1 cut(s) 813
SmiMI CAYNNNNRTG 2 cut(s) 53, 401
Sse9I AATT 1 cut(s) 114
SsiI CCGC 1 cut(s) 731
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 3 cut(s) 73, 91, 553
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 174, 579
TasI AATT 1 cut(s) 114
TfiI GAWTC 3 cut(s) 26, 59, 227
Tru1I TTAA 8 cut(s) 222, 257, 306, 357, 558, 662, 735, 825
Tru9I TTAA 8 cut(s) 222, 257, 306, 357, 558, 662, 735, 825
TscAI CASTG 2 cut(s) 652, 726
TseFI GTSAC 2 cut(s) 158, 721
TseI GCWGC 3 cut(s) 14, 623, 626
Tsp45I GTSAC 2 cut(s) 158, 721
TspDTI ATGAA 1 cut(s) 10
TspRI CASTG 2 cut(s) 652, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.