RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G67950 AT1G67950 AT1G67950 AT1G67950 |
| fragaria_vesca | FvH4_4g33260 |
| malus_domestica | MD13G1017900.v1.1 MD16G1015900.v1.1 |
| prunus_persica | Prupe.1G335700_v2.0.a1 |
| pyrus_communis | pycom13g01530 pycom16g01480 |
| rosa_chinensis | RchiOBHm_Chr4g0442411 |
| rosa_laevigata | RLG00000006012 |
| rosa_multiflora | Rmu_ssc0000204.1_g000062 |
| rosa_roxburghii | Rroxscaffold_5G00383250 |
| rosa_rugosa | Rorug04G0340900 |
| rosa_samantha | Rh4AG392600 Rh4BG406200 Rh4CG421400 Rh4DG399400 |
| rosa_wichuraiana | Rw4G033910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1006 |
| AatII | GACGTC | 1 cut(s) | 1187 |
| Acc36I | ACCTGC | 1 cut(s) | 1006 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 497 |
| AciI | CCGC | 2 cut(s) | 704, 1019 |
| AclWI | GGATC | 3 cut(s) | 731, 1232, 1369 |
| AcsI | RAATTY | 6 cut(s) | 237, 264, 470, 486, 839, 1598 |
| AcyI | GRCGYC | 1 cut(s) | 1184 |
| AdeI | CACNNNGTG | 1 cut(s) | 935 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 497, 694, 1150, 1512 |
| AgsI | TTSAA | 8 cut(s) | 194, 233, 629, 649, 875, 1051, 1434, 1592 |
| AhlI | ACTAGT | 1 cut(s) | 1067 |
| AjnI | CCWGG | 2 cut(s) | 1454, 1618 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1280, 1312 |
| Alw26I | GTCTC | 4 cut(s) | 146, 182, 1309, 1496 |
| AlwI | GGATC | 3 cut(s) | 731, 1232, 1369 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1364 |
| AoxI | GGCC | 1 cut(s) | 429 |
| ApeKI | GCWGC | 5 cut(s) | 746, 1015, 1112, 1259, 1439 |
| ApoI | RAATTY | 6 cut(s) | 237, 264, 470, 486, 839, 1598 |
| AsuHPI | GGTGA | 4 cut(s) | 299, 501, 907, 1288 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 213, 245 |
| BbsI | GAAGAC | 1 cut(s) | 791 |
| BbvCI | CCTCAGC | 2 cut(s) | 1443, 1485 |
| BbvI | GCAGC | 5 cut(s) | 733, 1002, 1099, 1246, 1451 |
| BccI | CCATC | 7 cut(s) | 346, 569, 1045, 1228, 1279, 1560, 1573 |
| BceAI | ACGGC | 1 cut(s) | 1362 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 55, 89 |
| BciT130I | CCWGG | 2 cut(s) | 1456, 1620 |
| BclI | TGATCA | 2 cut(s) | 1216, 1509 |
| BcoDI | GTCTC | 4 cut(s) | 146, 182, 1309, 1496 |
| BcuI | ACTAGT | 1 cut(s) | 1067 |
| BfaI | CTAG | 2 cut(s) | 261, 1068 |
| BfmI | CTRYAG | 2 cut(s) | 151, 435 |
| BfuAI | ACCTGC | 1 cut(s) | 1006 |
| BglII | AGATCT | 1 cut(s) | 97 |
| BisI | GCNGC | 6 cut(s) | 747, 1016, 1019, 1113, 1260, 1440 |
| BlpI | GCTNAGC | 1 cut(s) | 1338 |
| BlsI | GCNGC | 6 cut(s) | 748, 1017, 1020, 1114, 1261, 1441 |
| Bme1390I | CCNGG | 2 cut(s) | 1456, 1620 |
| BmiI | GGNNCC | 3 cut(s) | 79, 699, 964 |
| BmrFI | CCNGG | 2 cut(s) | 1456, 1620 |
| BmrI | ACTGGG | 1 cut(s) | 733 |
| BmsI | GCATC | 5 cut(s) | 310, 319, 916, 1129, 1202 |
| BmuI | ACTGGG | 1 cut(s) | 733 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1614 |
| BpiI | GAAGAC | 1 cut(s) | 791 |
| BpmI | CTGGAG | 1 cut(s) | 876 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1002, 1145, 1443, 1485 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1338 |
| BpuEI | CTTGAG | 2 cut(s) | 498, 1100 |
| BsaHI | GRCGYC | 1 cut(s) | 1184 |
| BsaI | GGTCTC | 2 cut(s) | 1309, 1496 |
| BsaJI | CCNNGG | 5 cut(s) | 324, 1116, 1188, 1200, 1464 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 497, 694, 1150, 1512 |
| Bse1I | ACTGG | 2 cut(s) | 739, 1583 |
| Bse3DI | GCAATG | 2 cut(s) | 417, 638 |
| BseBI | CCWGG | 2 cut(s) | 1456, 1620 |
| BseDI | CCNNGG | 5 cut(s) | 324, 1116, 1188, 1200, 1464 |
| BseGI | GGATG | 5 cut(s) | 334, 1032, 1144, 1294, 1453 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 497, 694, 1150, 1512 |
| BseMI | GCAATG | 2 cut(s) | 417, 638 |
| BseMII | CTCAG | 4 cut(s) | 561, 1329, 1434, 1476 |
| BseNI | ACTGG | 2 cut(s) | 739, 1583 |
| BseRI | GAGGAG | 4 cut(s) | 587, 1181, 1502, 1505 |
| BseXI | GCAGC | 5 cut(s) | 733, 1002, 1099, 1246, 1451 |
| BseYI | CCCAGC | 1 cut(s) | 1057 |
| BsgI | GTGCAG | 2 cut(s) | 957, 1377 |
| BshFI | GGCC | 1 cut(s) | 431 |
| BsiSI | CCGG | 3 cut(s) | 145, 701, 1022 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 497, 694, 1150, 1512 |
| BsmAI | GTCTC | 4 cut(s) | 146, 182, 1309, 1496 |
| BsmI | GAATGC | 3 cut(s) | 586, 1160, 1420 |
| BsnI | GGCC | 1 cut(s) | 431 |
| Bso31I | GGTCTC | 2 cut(s) | 1309, 1496 |
| Bsp143I | GATC | 8 cut(s) | 97, 597, 723, 1216, 1224, 1361, 1509, 1527 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1338 |
| BspACI | CCGC | 2 cut(s) | 704, 1019 |
| BspANI | GGCC | 1 cut(s) | 431 |
| BspCNI | CTCAG | 4 cut(s) | 562, 1330, 1435, 1477 |
| BspHI | TCATGA | 1 cut(s) | 214 |
| BspLI | GGNNCC | 3 cut(s) | 79, 699, 964 |
| BspMI | ACCTGC | 1 cut(s) | 1006 |
| BspPI | GGATC | 3 cut(s) | 731, 1232, 1369 |
| BspQI | GCTCTTC | 1 cut(s) | 1249 |
| BspTNI | GGTCTC | 2 cut(s) | 1309, 1496 |
| BsrDI | GCAATG | 2 cut(s) | 417, 638 |
| BsrI | ACTGG | 2 cut(s) | 739, 1583 |
| BssECI | CCNNGG | 5 cut(s) | 324, 1116, 1188, 1200, 1464 |
| BssMI | GATC | 8 cut(s) | 97, 597, 723, 1216, 1224, 1361, 1509, 1527 |
| BssNI | GRCGYC | 1 cut(s) | 1184 |
| BssT1I | CCWWGG | 4 cut(s) | 324, 1116, 1188, 1464 |
| Bst2UI | CCWGG | 2 cut(s) | 1456, 1620 |
| Bst4CI | ACNGT | 3 cut(s) | 161, 1204, 1296 |
| Bst6I | CTCTTC | 1 cut(s) | 1249 |
| BstACI | GRCGYC | 1 cut(s) | 1184 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 935, 1355, 1364 |
| BstC8I | GCNNGC | 1 cut(s) | 1351 |
| BstDEI | CTNAG | 6 cut(s) | 570, 1002, 1145, 1338, 1443, 1485 |
| BstDSI | CCRYGG | 1 cut(s) | 1200 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1148 |
| BstF5I | GGATG | 5 cut(s) | 334, 1032, 1144, 1294, 1453 |
| BstKTI | GATC | 8 cut(s) | 100, 600, 726, 1219, 1227, 1364, 1512, 1530 |
| BstMAI | GTCTC | 4 cut(s) | 146, 182, 1309, 1496 |
| BstMBI | GATC | 8 cut(s) | 97, 597, 723, 1216, 1224, 1361, 1509, 1527 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 154, 428, 935, 944, 1355, 1364 |
| BstNI | CCWGG | 2 cut(s) | 1456, 1620 |
| BstNSI | RCATGY | 2 cut(s) | 251, 400 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1614 |
| BstSCI | CCNGG | 2 cut(s) | 1454, 1618 |
| BstSFI | CTRYAG | 2 cut(s) | 151, 435 |
| BstV1I | GCAGC | 5 cut(s) | 733, 1002, 1099, 1246, 1451 |
| BstV2I | GAAGAC | 1 cut(s) | 791 |
| BstX2I | RGATCY | 2 cut(s) | 97, 1361 |
| BstYI | RGATCY | 2 cut(s) | 97, 1361 |
| BsuRI | GGCC | 1 cut(s) | 431 |
| BtgI | CCRYGG | 1 cut(s) | 1200 |
| BtgZI | GCGATG | 1 cut(s) | 460 |
| BtsCI | GGATG | 5 cut(s) | 334, 1032, 1144, 1294, 1453 |
| BtsI | GCAGTG | 2 cut(s) | 660, 1360 |
| BtsIMutI | CAGTG | 4 cut(s) | 157, 450, 660, 1360 |
| BveI | ACCTGC | 1 cut(s) | 1006 |
| Cac8I | GCNNGC | 1 cut(s) | 1351 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1364 |
| CciI | TCATGA | 1 cut(s) | 214 |
| CviAII | CATG | 6 cut(s) | 215, 248, 397, 1249, 1404, 1507 |
| DdeI | CTNAG | 6 cut(s) | 570, 1002, 1145, 1338, 1443, 1485 |
| DpnI | GATC | 8 cut(s) | 99, 599, 725, 1218, 1226, 1363, 1511, 1529 |
| DpnII | GATC | 8 cut(s) | 97, 597, 723, 1216, 1224, 1361, 1509, 1527 |
| DraIII | CACNNNGTG | 1 cut(s) | 935 |
| Eam1104I | CTCTTC | 1 cut(s) | 1249 |
| EarI | CTCTTC | 1 cut(s) | 1249 |
| EciI | GGCGGA | 1 cut(s) | 719 |
| Eco130I | CCWWGG | 4 cut(s) | 324, 1116, 1188, 1464 |
| Eco147I | AGGCCT | 1 cut(s) | 431 |
| Eco31I | GGTCTC | 2 cut(s) | 1309, 1496 |
| Eco32I | GATATC | 2 cut(s) | 386, 832 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1148 |
| EcoRI | GAATTC | 4 cut(s) | 264, 470, 486, 839 |
| EcoRII | CCWGG | 2 cut(s) | 1454, 1618 |
| EcoRV | GATATC | 2 cut(s) | 386, 832 |
| EcoT14I | CCWWGG | 4 cut(s) | 324, 1116, 1188, 1464 |
| EcoT22I | ATGCAT | 1 cut(s) | 1420 |
| ErhI | CCWWGG | 4 cut(s) | 324, 1116, 1188, 1464 |
| FaeI | CATG | 6 cut(s) | 218, 251, 400, 1252, 1407, 1510 |
| FatI | CATG | 6 cut(s) | 214, 247, 396, 1248, 1403, 1506 |
| FbaI | TGATCA | 2 cut(s) | 1216, 1509 |
| Fnu4HI | GCNGC | 6 cut(s) | 747, 1016, 1019, 1113, 1260, 1440 |
| FokI | GGATG | 5 cut(s) | 341, 1019, 1151, 1301, 1460 |
| Fsp4HI | GCNGC | 6 cut(s) | 747, 1016, 1019, 1113, 1260, 1440 |
| FspBI | CTAG | 2 cut(s) | 261, 1068 |
| GluI | GCNGC | 6 cut(s) | 747, 1016, 1019, 1113, 1260, 1440 |
| GsaI | CCCAGC | 1 cut(s) | 1061 |
| GsuI | CTGGAG | 1 cut(s) | 876 |
| HaeIII | GGCC | 1 cut(s) | 431 |
| HapII | CCGG | 3 cut(s) | 145, 701, 1022 |
| Hin1I | GRCGYC | 1 cut(s) | 1184 |
| Hin1II | CATG | 6 cut(s) | 218, 251, 400, 1252, 1407, 1510 |
| HincII | GTYRAC | 1 cut(s) | 820 |
| HindII | GTYRAC | 1 cut(s) | 820 |
| HindIII | AAGCTT | 1 cut(s) | 188 |
| HinfI | GANTC | 3 cut(s) | 440, 554, 949 |
| HpaI | GTTAAC | 1 cut(s) | 820 |
| HpaII | CCGG | 3 cut(s) | 145, 701, 1022 |
| HphI | GGTGA | 4 cut(s) | 299, 501, 907, 1288 |
| Hpy166II | GTNNAC | 2 cut(s) | 14, 820 |
| Hpy8I | GTNNAC | 2 cut(s) | 14, 820 |
| HpyAV | CCTTC | 3 cut(s) | 239, 1078, 1465 |
| HpyCH4III | ACNGT | 3 cut(s) | 161, 1204, 1296 |
| HpyCH4IV | ACGT | 1 cut(s) | 1184 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 154, 428, 935, 944, 1355, 1364 |
| HpyF3I | CTNAG | 6 cut(s) | 570, 1002, 1145, 1338, 1443, 1485 |
| HpySE526I | ACGT | 1 cut(s) | 1184 |
| Hsp92I | GRCGYC | 1 cut(s) | 1184 |
| Hsp92II | CATG | 6 cut(s) | 218, 251, 400, 1252, 1407, 1510 |
| Ksp22I | TGATCA | 2 cut(s) | 1216, 1509 |
| KspAI | GTTAAC | 1 cut(s) | 820 |
| Kzo9I | GATC | 8 cut(s) | 97, 597, 723, 1216, 1224, 1361, 1509, 1527 |
| LguI | GCTCTTC | 1 cut(s) | 1249 |
| LmnI | GCTCC | 6 cut(s) | 419, 703, 739, 962, 1168, 1397 |
| Lsp1109I | GCAGC | 5 cut(s) | 733, 1002, 1099, 1246, 1451 |
| LweI | GCATC | 5 cut(s) | 310, 319, 916, 1129, 1202 |
| MaeI | CTAG | 2 cut(s) | 261, 1068 |
| MaeII | ACGT | 1 cut(s) | 1184 |
| MaeIII | GTNAC | 8 cut(s) | 287, 464, 913, 985, 1063, 1121, 1207, 1450 |
| MalI | GATC | 8 cut(s) | 99, 599, 725, 1218, 1226, 1363, 1511, 1529 |
| MboI | GATC | 8 cut(s) | 97, 597, 723, 1216, 1224, 1361, 1509, 1527 |
| MboII | GAAGA | 6 cut(s) | 64, 92, 127, 796, 1103, 1266 |
| MfeI | CAATTG | 2 cut(s) | 624, 765 |
| MflI | RGATCY | 2 cut(s) | 97, 1361 |
| Mph1103I | ATGCAT | 1 cut(s) | 1420 |
| MseI | TTAA | 4 cut(s) | 48, 792, 819, 921 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1557 |
| MspA1I | CMGCKG | 3 cut(s) | 746, 1015, 1442 |
| MspI | CCGG | 3 cut(s) | 145, 701, 1022 |
| MspR9I | CCNGG | 2 cut(s) | 1456, 1620 |
| MunI | CAATTG | 2 cut(s) | 624, 765 |
| Mva1269I | GAATGC | 3 cut(s) | 586, 1160, 1420 |
| MvaI | CCWGG | 2 cut(s) | 1456, 1620 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 154, 428, 935, 944, 1355, 1364 |
| NdeII | GATC | 8 cut(s) | 97, 597, 723, 1216, 1224, 1361, 1509, 1527 |
| NlaIII | CATG | 6 cut(s) | 218, 251, 400, 1252, 1407, 1510 |
| NlaIV | GGNNCC | 3 cut(s) | 79, 699, 964 |
| NmuCI | GTSAC | 5 cut(s) | 287, 464, 913, 985, 1450 |
| NsiI | ATGCAT | 1 cut(s) | 1420 |
| NspI | RCATGY | 2 cut(s) | 251, 400 |
| PagI | TCATGA | 1 cut(s) | 214 |
| PaqCI | CACCTGC | 1 cut(s) | 1006 |
| PceI | AGGCCT | 1 cut(s) | 431 |
| PciSI | GCTCTTC | 1 cut(s) | 1249 |
| PctI | GAATGC | 3 cut(s) | 586, 1160, 1420 |
| PfeI | GAWTC | 3 cut(s) | 440, 554, 949 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 497 |
| PfoI | TCCNGGA | 1 cut(s) | 1618 |
| PkrI | GCNGC | 6 cut(s) | 748, 1017, 1020, 1114, 1261, 1441 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1614 |
| Psp6I | CCWGG | 2 cut(s) | 1454, 1618 |
| PspFI | CCCAGC | 1 cut(s) | 1057 |
| PspGI | CCWGG | 2 cut(s) | 1454, 1618 |
| PspN4I | GGNNCC | 3 cut(s) | 79, 699, 964 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1364 |
| PsuI | RGATCY | 2 cut(s) | 97, 1361 |
| PvuII | CAGCTG | 3 cut(s) | 746, 1015, 1442 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1557 |
| SapI | GCTCTTC | 1 cut(s) | 1249 |
| SaqAI | TTAA | 4 cut(s) | 48, 792, 819, 921 |
| SatI | GCNGC | 6 cut(s) | 747, 1016, 1019, 1113, 1260, 1440 |
| Sau3AI | GATC | 8 cut(s) | 97, 597, 723, 1216, 1224, 1361, 1509, 1527 |
| ScrFI | CCNGG | 2 cut(s) | 1456, 1620 |
| SfaNI | GCATC | 5 cut(s) | 310, 319, 916, 1129, 1202 |
| SfcI | CTRYAG | 2 cut(s) | 151, 435 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1557 |
| SmlI | CTYRAG | 2 cut(s) | 513, 1079 |
| SmoI | CTYRAG | 2 cut(s) | 513, 1079 |
| SpeI | ACTAGT | 1 cut(s) | 1067 |
| SseBI | AGGCCT | 1 cut(s) | 431 |
| SsiI | CCGC | 2 cut(s) | 704, 1019 |
| SspMI | CTAG | 2 cut(s) | 261, 1068 |
| StuI | AGGCCT | 1 cut(s) | 431 |
| StyD4I | CCNGG | 2 cut(s) | 1454, 1618 |
| StyI | CCWWGG | 4 cut(s) | 324, 1116, 1188, 1464 |
| TaaI | ACNGT | 3 cut(s) | 161, 1204, 1296 |
| TaiI | ACGT | 1 cut(s) | 1187 |
| TaqI | TCGA | 1 cut(s) | 1164 |
| TaqII | GACCGA | 1 cut(s) | 1217 |
| TauI | GCSGC | 1 cut(s) | 1021 |
| TfiI | GAWTC | 3 cut(s) | 440, 554, 949 |
| Tru1I | TTAA | 4 cut(s) | 48, 792, 819, 921 |
| Tru9I | TTAA | 4 cut(s) | 48, 792, 819, 921 |
| TscAI | CASTG | 4 cut(s) | 164, 450, 667, 1360 |
| TseFI | GTSAC | 5 cut(s) | 287, 464, 913, 985, 1450 |
| TseI | GCWGC | 5 cut(s) | 746, 1015, 1112, 1259, 1439 |
| Tsp45I | GTSAC | 5 cut(s) | 287, 464, 913, 985, 1450 |
| TspDTI | ATGAA | 9 cut(s) | 80, 179, 463, 593, 837, 1284, 1305, 1392, 1575 |
| TspRI | CASTG | 4 cut(s) | 164, 450, 667, 1360 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 497 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1148 |
| XapI | RAATTY | 6 cut(s) | 237, 264, 470, 486, 839, 1598 |
| XceI | RCATGY | 2 cut(s) | 251, 400 |
| XspI | CTAG | 2 cut(s) | 261, 1068 |
| ZraI | GACGTC | 1 cut(s) | 1185 |
| Zsp2I | ATGCAT | 1 cut(s) | 1420 |