pycom16g01480

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0010838
Physical Location & Seq
Forward (+)
922074 .. 923282
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g01480.2

Sequence Viewer

Length: 936 bp
ATGCAGGTAAAGTCAGTTAAAGTAAGCAACATCTCGCAAGCCATTTCCGACAAGGATATCAAGGAATTCTTATCATTTTCCGGAGATATTCAACATGTTGAGATGCAACGGTACACATTTTTTAGTTATGTATGTGACAGATTTAGTACGTTCGCGATTCTGAAGATTTCGGTGTTGTGTTCATGCAGGGAAACTGAAAATACACAGCTTGCCTACGTTACCTTCAAGGAAGCACAAGGAGCAGATACAGCAGTTCTTTTGTCGGGAGCCACCATAGCAGATCTTCCTGTCACCATTACAACTGCCAAGGATTACAAGCTGCCTCCTGAAGCTATTCCGCTCCCATCAAGCCCGAAAAAGCCAGCTGCTGCTAGTTCTGCTGTAAAGAAGGCAGAAGATGTGGCCAGCGCTATGCTTGCCAAGGGATACATCTTAGGAAAGGATGCGATTAACAAGGCGAAAGAGTTTGACGAGAGGCATAAGTTGACGTCAAAGGTCTCTGCCACAGTCGTTTCAATTAACGAAAGGATGGGGCTGATGGAGAAGCTAGGTGCTGGAAGAGCTGTTGTCAGCGAAAAGGTGAGAGAGATGGATCAAAAGTTCATGGTATCTGAAAAGACAAAGTCTGCCTTTGCTGTTGCCGAGCAGAAGGCAAGCAGTGCGGGATCTTCTATCATGAGCAACCCTTATGTATTGACCGGGGCCTCATGGGTTTCTAACGCACTCAGCGCAGTTGCAAAGGTGGCTGAGGATGTGGGCATGATGGCCAAGGAGAAGGTGGAGAGGACCGAGGAGGAAAAAATGGAGATCATGCACAGGCAGAGGACAGAGGTCATCACTGACTTTGCACAAACCCATCTTGACGAATCTTCTGCCCCGGAGCCTCCAGTTGCTCCAGTCAGTTCTCCTGATGATACAAAGCCCGGTGTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

312

Amino Acids

33.73

Weight (kDa)

6.48

Isoelectric Point (pI)

35.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010838)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67950 AT1G67950 AT1G67950 AT1G67950
fragaria_vesca FvH4_4g33260
malus_domestica MD13G1017900.v1.1 MD16G1015900.v1.1
prunus_persica Prupe.1G335700_v2.0.a1
pyrus_communis pycom13g01530 pycom16g01480
rosa_chinensis RchiOBHm_Chr4g0442411
rosa_laevigata RLG00000006012
rosa_multiflora Rmu_ssc0000204.1_g000062
rosa_roxburghii Rroxscaffold_5G00383250
rosa_rugosa Rorug04G0340900
rosa_samantha Rh4AG392600 Rh4BG406200 Rh4CG421400 Rh4DG399400
rosa_wichuraiana Rw4G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 491
AccBSI CCGCTC 1 cut(s) 340
AccII CGCG 1 cut(s) 155
AccIII TCCGGA 1 cut(s) 80
AciI CCGC 2 cut(s) 338, 662
AclWI GGATC 2 cut(s) 600, 673
AcoI YGGCCR 2 cut(s) 402, 765
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 2 cut(s) 182, 348
AcyI GRCGYC 1 cut(s) 488
AfaI GTAC 2 cut(s) 113, 148
AfeI AGCGCT 1 cut(s) 409
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 3 cut(s) 92, 226, 516
AloI GAACNNNNNNTCC 2 cut(s) 584, 616
AluBI AGCT 6 cut(s) 208, 319, 332, 365, 547, 563
AluI AGCT 6 cut(s) 208, 319, 332, 365, 547, 563
Alw26I GTCTC 1 cut(s) 502
AlwI GGATC 2 cut(s) 600, 673
AlwNI CAGNNNCTG 1 cut(s) 368
Aor13HI TCCGGA 1 cut(s) 80
Aor51HI AGCGCT 1 cut(s) 409
AoxI GGCC 3 cut(s) 402, 702, 765
ApeKI GCWGC 3 cut(s) 319, 365, 368
ApoI RAATTY 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 333
AspLEI GCGC 2 cut(s) 410, 731
AspS9I GGNCC 2 cut(s) 702, 786
AsuC2I CCSGG 3 cut(s) 700, 878, 924
AsuHPI GGTGA 2 cut(s) 283, 592
AvaII GGWCC 1 cut(s) 786
BaeI ACNNNNGTAYC 2 cut(s) 237, 270
BalI TGGCCA 2 cut(s) 404, 767
BbvCI CCTCAGC 1 cut(s) 747
BbvI GCAGC 3 cut(s) 306, 352, 355
BccI CCATC 6 cut(s) 352, 523, 532, 583, 757, 864
BcgI CGANNNNNNTGC 2 cut(s) 854, 888
BciVI GTATCC 1 cut(s) 419
BcnI CCSGG 3 cut(s) 700, 878, 924
BcoDI GTCTC 1 cut(s) 502
BfaI CTAG 2 cut(s) 372, 548
BfoI RGCGCY 1 cut(s) 411
BfuI GTATCC 1 cut(s) 419
BglII AGATCT 1 cut(s) 280
BisI GCNGC 3 cut(s) 320, 366, 369
BlsI GCNGC 3 cut(s) 321, 367, 370
Bme1390I CCNGG 3 cut(s) 700, 878, 924
Bme18I GGWCC 1 cut(s) 786
BmgT120I GGNCC 2 cut(s) 702, 786
BmiI GGNNCC 3 cut(s) 268, 703, 882
BmrFI CCNGG 3 cut(s) 700, 878, 924
BmsI GCATC 2 cut(s) 93, 433
BoxI GACNNNNGTC 1 cut(s) 830
BpmI CTGGAG 2 cut(s) 870, 879
Bpu10I CCTNAGC 1 cut(s) 747
BpuMI CCSGG 3 cut(s) 700, 878, 924
BsaHI GRCGYC 1 cut(s) 488
BsaI GGTCTC 1 cut(s) 502
BsaJI CCNNGG 6 cut(s) 306, 420, 699, 768, 789, 876
BsaWI WCCGGW 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 887, 896
BseAI TCCGGA 1 cut(s) 80
BseDI CCNNGG 6 cut(s) 306, 420, 699, 768, 789, 876
BseGI GGATG 3 cut(s) 448, 534, 757
BseMII CTCAG 2 cut(s) 738, 739
BseNI ACTGG 2 cut(s) 887, 896
BseRI GAGGAG 1 cut(s) 806
BseXI GCAGC 3 cut(s) 306, 352, 355
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 3 cut(s) 404, 704, 767
BsiSI CCGG 4 cut(s) 81, 699, 878, 924
BsmAI GTCTC 1 cut(s) 502
BsnI GGCC 3 cut(s) 404, 704, 767
Bso31I GGTCTC 1 cut(s) 502
Bsp13I TCCGGA 1 cut(s) 80
Bsp143I GATC 4 cut(s) 280, 592, 665, 807
Bsp68I TCGCGA 1 cut(s) 155
BspACI CCGC 2 cut(s) 338, 662
BspANI GGCC 3 cut(s) 404, 704, 767
BspCNI CTCAG 2 cut(s) 738, 739
BspEI TCCGGA 1 cut(s) 80
BspFNI CGCG 1 cut(s) 155
BspHI TCATGA 1 cut(s) 675
BspLI GGNNCC 3 cut(s) 268, 703, 882
BspPI GGATC 2 cut(s) 600, 673
BspQI GCTCTTC 1 cut(s) 553
BspTNI GGTCTC 1 cut(s) 502
BsrBI CCGCTC 1 cut(s) 340
BsrI ACTGG 2 cut(s) 887, 896
BssECI CCNNGG 6 cut(s) 306, 420, 699, 768, 789, 876
BssMI GATC 4 cut(s) 280, 592, 665, 807
BssNI GRCGYC 1 cut(s) 488
BssT1I CCWWGG 3 cut(s) 306, 420, 768
Bst4CI ACNGT 2 cut(s) 111, 508
Bst6I CTCTTC 1 cut(s) 553
BstACI GRCGYC 1 cut(s) 488
BstAPI GCANNNNNTGC 1 cut(s) 659
BstC8I GCNNGC 6 cut(s) 39, 210, 363, 406, 417, 655
BstDEI CTNAG 3 cut(s) 433, 725, 747
BstF5I GGATG 3 cut(s) 448, 534, 757
BstFNI CGCG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 2 cut(s) 410, 731
BstKTI GATC 4 cut(s) 283, 595, 668, 810
BstMAI GTCTC 1 cut(s) 502
BstMBI GATC 4 cut(s) 280, 592, 665, 807
BstMWI GCNNNNNNNGC 9 cut(s) 239, 248, 275, 377, 416, 560, 659, 728, 743
BstNSI RCATGY 1 cut(s) 98
BstPAI GACNNNNGTC 1 cut(s) 830
BstSCI CCNGG 3 cut(s) 698, 876, 922
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 3 cut(s) 306, 352, 355
BstX2I RGATCY 2 cut(s) 280, 665
BstYI RGATCY 2 cut(s) 280, 665
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 3 cut(s) 404, 704, 767
BtsCI GGATG 3 cut(s) 448, 534, 757
BtsI GCAGTG 1 cut(s) 664
BtsIMutI CAGTG 2 cut(s) 664, 837
BtuMI TCGCGA 1 cut(s) 155
Cac8I GCNNGC 6 cut(s) 39, 210, 363, 406, 417, 655
CaiI CAGNNNCTG 1 cut(s) 368
CciI TCATGA 1 cut(s) 675
CfoI GCGC 2 cut(s) 410, 731
Cfr13I GGNCC 2 cut(s) 702, 786
Csp6I GTAC 2 cut(s) 112, 147
CviAII CATG 7 cut(s) 95, 183, 604, 676, 708, 760, 811
CviQI GTAC 2 cut(s) 112, 147
DdeI CTNAG 3 cut(s) 433, 725, 747
DpnI GATC 4 cut(s) 282, 594, 667, 809
DpnII GATC 4 cut(s) 280, 592, 665, 807
EaeI YGGCCR 2 cut(s) 402, 765
Eam1104I CTCTTC 1 cut(s) 553
EarI CTCTTC 1 cut(s) 553
Eco130I CCWWGG 3 cut(s) 306, 420, 768
Eco31I GGTCTC 1 cut(s) 502
Eco32I GATATC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 786
Eco47III AGCGCT 1 cut(s) 409
Eco57I CTGAAG 2 cut(s) 182, 348
EcoO109I RGGNCCY 1 cut(s) 702
EcoRI GAATTC 1 cut(s) 65
EcoRV GATATC 1 cut(s) 58
EcoT14I CCWWGG 3 cut(s) 306, 420, 768
ErhI CCWWGG 3 cut(s) 306, 420, 768
FaeI CATG 7 cut(s) 98, 186, 607, 679, 711, 763, 814
FalI AAGNNNNNCTT 4 cut(s) 53, 85, 614, 646
FatI CATG 7 cut(s) 94, 182, 603, 675, 707, 759, 810
FauI CCCGC 1 cut(s) 655
Fnu4HI GCNGC 3 cut(s) 320, 366, 369
FokI GGATG 3 cut(s) 455, 541, 764
Fsp4HI GCNGC 3 cut(s) 320, 366, 369
FspBI CTAG 2 cut(s) 372, 548
GlaI GCGC 2 cut(s) 409, 730
GluI GCNGC 3 cut(s) 320, 366, 369
GsuI CTGGAG 2 cut(s) 870, 879
HaeII RGCGCY 1 cut(s) 411
HaeIII GGCC 3 cut(s) 404, 704, 767
HapII CCGG 4 cut(s) 81, 699, 878, 924
HhaI GCGC 2 cut(s) 410, 731
Hin1I GRCGYC 1 cut(s) 488
Hin1II CATG 7 cut(s) 98, 186, 607, 679, 711, 763, 814
Hin6I GCGC 2 cut(s) 408, 729
HinP1I GCGC 2 cut(s) 408, 729
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HinfI GANTC 2 cut(s) 157, 866
HpaII CCGG 4 cut(s) 81, 699, 878, 924
HphI GGTGA 2 cut(s) 283, 592
Hpy166II GTNNAC 2 cut(s) 114, 486
Hpy188I TCNGA 3 cut(s) 49, 162, 613
Hpy188III TCNNGA 7 cut(s) 81, 154, 264, 326, 676, 860, 908
Hpy8I GTNNAC 2 cut(s) 114, 486
HpyAV CCTTC 4 cut(s) 232, 382, 643, 769
HpyCH4III ACNGT 2 cut(s) 111, 508
HpyCH4IV ACGT 3 cut(s) 149, 216, 488
HpyCH4V TGCA 6 cut(s) 4, 106, 186, 737, 814, 848
HpyF10VI GCNNNNNNNGC 9 cut(s) 239, 248, 275, 377, 416, 560, 659, 728, 743
HpyF3I CTNAG 3 cut(s) 433, 725, 747
HpySE526I ACGT 3 cut(s) 149, 216, 488
Hsp92I GRCGYC 1 cut(s) 488
Hsp92II CATG 7 cut(s) 98, 186, 607, 679, 711, 763, 814
HspAI GCGC 2 cut(s) 408, 729
Kpn2I TCCGGA 1 cut(s) 80
Kzo9I GATC 4 cut(s) 280, 592, 665, 807
LguI GCTCTTC 1 cut(s) 553
LmnI GCTCC 5 cut(s) 239, 266, 345, 880, 898
Lsp1109I GCAGC 3 cut(s) 306, 352, 355
LweI GCATC 2 cut(s) 93, 433
MaeI CTAG 2 cut(s) 372, 548
MaeII ACGT 3 cut(s) 149, 216, 488
MaeIII GTNAC 3 cut(s) 134, 217, 289
MalI GATC 4 cut(s) 282, 594, 667, 809
MbiI CCGCTC 1 cut(s) 340
MboI GATC 4 cut(s) 280, 592, 665, 807
MboII GAAGA 6 cut(s) 175, 275, 407, 570, 660, 861
MflI RGATCY 2 cut(s) 280, 665
MlsI TGGCCA 2 cut(s) 404, 767
MluCI AATT 2 cut(s) 65, 516
MluNI TGGCCA 2 cut(s) 404, 767
MmeI TCCRAC 1 cut(s) 72
Mox20I TGGCCA 2 cut(s) 404, 767
MroI TCCGGA 1 cut(s) 80
MroXI GAANNNNTTC 1 cut(s) 333
MscI TGGCCA 2 cut(s) 404, 767
MseI TTAA 4 cut(s) 18, 450, 519, 930
Msp20I TGGCCA 2 cut(s) 404, 767
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 4 cut(s) 81, 699, 878, 924
MspR9I CCNGG 3 cut(s) 700, 878, 924
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 9 cut(s) 239, 248, 275, 377, 416, 560, 659, 728, 743
NciI CCSGG 3 cut(s) 700, 878, 924
NdeII GATC 4 cut(s) 280, 592, 665, 807
NlaIII CATG 7 cut(s) 98, 186, 607, 679, 711, 763, 814
NlaIV GGNNCC 3 cut(s) 268, 703, 882
NmeAIII GCCGAG 1 cut(s) 667
NmuCI GTSAC 2 cut(s) 134, 289
NruI TCGCGA 1 cut(s) 155
NspI RCATGY 1 cut(s) 98
PagI TCATGA 1 cut(s) 675
PciI ACATGT 1 cut(s) 94
PciSI GCTCTTC 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 2 cut(s) 157, 866
PflFI GACNNNGTC 1 cut(s) 622
PkrI GCNGC 3 cut(s) 321, 367, 370
PscI ACATGT 1 cut(s) 94
PshAI GACNNNNGTC 1 cut(s) 830
PspN4I GGNNCC 3 cut(s) 268, 703, 882
PspPI GGNCC 2 cut(s) 702, 786
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 2 cut(s) 280, 665
PsyI GACNNNGTC 1 cut(s) 622
PvuII CAGCTG 1 cut(s) 365
RruI TCGCGA 1 cut(s) 155
RsaI GTAC 2 cut(s) 113, 148
RsaNI GTAC 2 cut(s) 112, 147
SapI GCTCTTC 1 cut(s) 553
SaqAI TTAA 4 cut(s) 18, 450, 519, 930
SatI GCNGC 3 cut(s) 320, 366, 369
Sau3AI GATC 4 cut(s) 280, 592, 665, 807
Sau96I GGNCC 2 cut(s) 702, 786
ScrFI CCNGG 3 cut(s) 700, 878, 924
SfaNI GCATC 2 cut(s) 93, 433
SinI GGWCC 1 cut(s) 786
Sse9I AATT 2 cut(s) 65, 516
SsiI CCGC 2 cut(s) 338, 662
SspMI CTAG 2 cut(s) 372, 548
StyD4I CCNGG 3 cut(s) 698, 876, 922
StyI CCWWGG 3 cut(s) 306, 420, 768
TaaI ACNGT 2 cut(s) 111, 508
TaiI ACGT 3 cut(s) 152, 219, 491
TaqII GACCGA 1 cut(s) 803
TasI AATT 2 cut(s) 65, 516
TfiI GAWTC 2 cut(s) 157, 866
Tru1I TTAA 4 cut(s) 18, 450, 519, 930
Tru9I TTAA 4 cut(s) 18, 450, 519, 930
TscAI CASTG 2 cut(s) 664, 844
TseFI GTSAC 2 cut(s) 134, 289
TseI GCWGC 3 cut(s) 319, 365, 368
Tsp45I GTSAC 2 cut(s) 134, 289
TspDTI ATGAA 2 cut(s) 171, 592
TspRI CASTG 2 cut(s) 664, 844
Tth111I GACNNNGTC 1 cut(s) 622
VpaK11BI GGWCC 1 cut(s) 786
XapI RAATTY 1 cut(s) 65
XceI RCATGY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 775
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 2 cut(s) 372, 548
ZraI GACGTC 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.