RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G67950 AT1G67950 AT1G67950 AT1G67950 |
| fragaria_vesca | FvH4_4g33260 |
| malus_domestica | MD13G1017900.v1.1 MD16G1015900.v1.1 |
| prunus_persica | Prupe.1G335700_v2.0.a1 |
| pyrus_communis | pycom13g01530 pycom16g01480 |
| rosa_chinensis | RchiOBHm_Chr4g0442411 |
| rosa_laevigata | RLG00000006012 |
| rosa_multiflora | Rmu_ssc0000204.1_g000062 |
| rosa_roxburghii | Rroxscaffold_5G00383250 |
| rosa_rugosa | Rorug04G0340900 |
| rosa_samantha | Rh4AG392600 Rh4BG406200 Rh4CG421400 Rh4DG399400 |
| rosa_wichuraiana | Rw4G033910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 324 |
| Acc36I | ACCTGC | 1 cut(s) | 382 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 541 |
| AccI | GTMKAC | 1 cut(s) | 5 |
| AciI | CCGC | 1 cut(s) | 332 |
| AclWI | GGATC | 1 cut(s) | 612 |
| AcoI | YGGCCR | 1 cut(s) | 414 |
| AcsI | RAATTY | 1 cut(s) | 152 |
| AcuI | CTGAAG | 1 cut(s) | 357 |
| AfeI | AGCGCT | 1 cut(s) | 421 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 541 |
| AgsI | TTSAA | 5 cut(s) | 38, 188, 235, 729, 750 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 596, 628 |
| Alw26I | GTCTC | 2 cut(s) | 124, 625 |
| AlwI | GGATC | 1 cut(s) | 612 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 410, 680 |
| Ama87I | CYCGRG | 1 cut(s) | 271 |
| Aor51HI | AGCGCT | 1 cut(s) | 421 |
| AoxI | GGCC | 2 cut(s) | 414, 798 |
| ApeKI | GCWGC | 1 cut(s) | 328 |
| ApoI | RAATTY | 1 cut(s) | 152 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 700, 732 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 42 |
| AspLEI | GCGC | 2 cut(s) | 422, 743 |
| AspS9I | GGNCC | 1 cut(s) | 798 |
| AsuC2I | CCSGG | 1 cut(s) | 362 |
| AsuHPI | GGTGA | 3 cut(s) | 292, 604, 841 |
| AvaI | CYCGRG | 1 cut(s) | 271 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 246, 279 |
| BalI | TGGCCA | 1 cut(s) | 416 |
| BbsI | GAAGAC | 1 cut(s) | 873 |
| BbvCI | CCTCAGC | 1 cut(s) | 759 |
| BbvI | GCAGC | 1 cut(s) | 315 |
| BccI | CCATC | 5 cut(s) | 361, 535, 544, 595, 876 |
| BceAI | ACGGC | 1 cut(s) | 326 |
| BcnI | CCSGG | 1 cut(s) | 362 |
| BcoDI | GTCTC | 2 cut(s) | 124, 625 |
| BfmI | CTRYAG | 1 cut(s) | 900 |
| BfoI | RGCGCY | 1 cut(s) | 423 |
| BfuAI | ACCTGC | 1 cut(s) | 382 |
| BisI | GCNGC | 2 cut(s) | 329, 332 |
| BlpI | GCTNAGC | 1 cut(s) | 654 |
| BlsI | GCNGC | 2 cut(s) | 330, 333 |
| Bme1390I | CCNGG | 1 cut(s) | 362 |
| BmeT110I | CYCGRG | 1 cut(s) | 271 |
| BmgT120I | GGNCC | 1 cut(s) | 798 |
| BmiI | GGNNCC | 2 cut(s) | 277, 894 |
| BmrFI | CCNGG | 1 cut(s) | 362 |
| BmrI | ACTGGG | 1 cut(s) | 43 |
| BmsI | GCATC | 2 cut(s) | 445, 499 |
| BmuI | ACTGGG | 1 cut(s) | 43 |
| BoxI | GACNNNNGTC | 1 cut(s) | 842 |
| BpiI | GAAGAC | 1 cut(s) | 873 |
| BpmI | CTGGAG | 2 cut(s) | 58, 189 |
| Bpu10I | CCTNAGC | 2 cut(s) | 560, 759 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 654 |
| BpuEI | CTTGAG | 1 cut(s) | 108 |
| BpuMI | CCSGG | 1 cut(s) | 362 |
| BsaI | GGTCTC | 1 cut(s) | 625 |
| BsaJI | CCNNGG | 3 cut(s) | 432, 780, 801 |
| BsaWI | WCCGGW | 2 cut(s) | 10, 710 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 267, 297 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 541 |
| Bse118I | RCCGGY | 1 cut(s) | 828 |
| Bse1I | ACTGG | 3 cut(s) | 49, 311, 912 |
| Bse3DI | GCAATG | 1 cut(s) | 121 |
| BseDI | CCNNGG | 3 cut(s) | 432, 780, 801 |
| BseGI | GGATG | 2 cut(s) | 460, 769 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 541 |
| BseMI | GCAATG | 1 cut(s) | 121 |
| BseMII | CTCAG | 3 cut(s) | 645, 750, 751 |
| BseNI | ACTGG | 3 cut(s) | 49, 311, 912 |
| BseRI | GAGGAG | 3 cut(s) | 257, 818, 821 |
| BseXI | GCAGC | 1 cut(s) | 315 |
| BseYI | CCCAGC | 2 cut(s) | 213, 934 |
| BsgI | GTGCAG | 1 cut(s) | 693 |
| BshFI | GGCC | 2 cut(s) | 416, 800 |
| BsiHKCI | CYCGRG | 1 cut(s) | 271 |
| BsiSI | CCGG | 4 cut(s) | 11, 362, 711, 829 |
| BslFI | GGGAC | 1 cut(s) | 329 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 541 |
| BsmAI | GTCTC | 2 cut(s) | 124, 625 |
| BsmFI | GGGAC | 1 cut(s) | 329 |
| BsnI | GGCC | 2 cut(s) | 416, 800 |
| Bso31I | GGTCTC | 1 cut(s) | 625 |
| BsoBI | CYCGRG | 1 cut(s) | 271 |
| Bsp143I | GATC | 2 cut(s) | 604, 819 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 654 |
| BspACI | CCGC | 1 cut(s) | 332 |
| BspANI | GGCC | 2 cut(s) | 416, 800 |
| BspCNI | CTCAG | 3 cut(s) | 646, 750, 751 |
| BspHI | TCATGA | 1 cut(s) | 687 |
| BspLI | GGNNCC | 2 cut(s) | 277, 894 |
| BspMAI | CTGCAG | 1 cut(s) | 904 |
| BspMI | ACCTGC | 1 cut(s) | 382 |
| BspPI | GGATC | 1 cut(s) | 612 |
| BspTNI | GGTCTC | 1 cut(s) | 625 |
| BsrDI | GCAATG | 1 cut(s) | 121 |
| BsrFI | RCCGGY | 1 cut(s) | 828 |
| BsrI | ACTGG | 3 cut(s) | 49, 311, 912 |
| BssAI | RCCGGY | 1 cut(s) | 828 |
| BssECI | CCNNGG | 3 cut(s) | 432, 780, 801 |
| BssMI | GATC | 2 cut(s) | 604, 819 |
| BssT1I | CCWWGG | 2 cut(s) | 432, 780 |
| Bst4CI | ACNGT | 3 cut(s) | 103, 283, 520 |
| Bst6I | CTCTTC | 1 cut(s) | 190 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 671, 680 |
| BstC8I | GCNNGC | 4 cut(s) | 219, 418, 429, 667 |
| BstDEI | CTNAG | 5 cut(s) | 445, 560, 654, 737, 759 |
| BstF5I | GGATG | 2 cut(s) | 460, 769 |
| BstH2I | RGCGCY | 1 cut(s) | 423 |
| BstHHI | GCGC | 2 cut(s) | 422, 743 |
| BstKTI | GATC | 2 cut(s) | 607, 822 |
| BstMAI | GTCTC | 2 cut(s) | 124, 625 |
| BstMBI | GATC | 2 cut(s) | 604, 819 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 257, 284, 389, 428, 572, 671, 680, 740, 908 |
| BstNSI | RCATGY | 1 cut(s) | 23 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 842 |
| BstSCI | CCNGG | 1 cut(s) | 360 |
| BstSFI | CTRYAG | 1 cut(s) | 900 |
| BstV1I | GCAGC | 1 cut(s) | 315 |
| BstV2I | GAAGAC | 1 cut(s) | 873 |
| BsuRI | GGCC | 2 cut(s) | 416, 800 |
| BtsCI | GGATG | 2 cut(s) | 460, 769 |
| BtsI | GCAGTG | 1 cut(s) | 676 |
| BtsIMutI | CAGTG | 1 cut(s) | 676 |
| BveI | ACCTGC | 1 cut(s) | 382 |
| Cac8I | GCNNGC | 4 cut(s) | 219, 418, 429, 667 |
| CaiI | CAGNNNCTG | 2 cut(s) | 410, 680 |
| CciI | TCATGA | 1 cut(s) | 687 |
| CfoI | GCGC | 2 cut(s) | 422, 743 |
| Cfr10I | RCCGGY | 1 cut(s) | 828 |
| Cfr13I | GGNCC | 1 cut(s) | 798 |
| CviAII | CATG | 4 cut(s) | 20, 616, 688, 772 |
| DdeI | CTNAG | 5 cut(s) | 445, 560, 654, 737, 759 |
| DpnI | GATC | 2 cut(s) | 606, 821 |
| DpnII | GATC | 2 cut(s) | 604, 819 |
| EaeI | YGGCCR | 1 cut(s) | 414 |
| Eam1104I | CTCTTC | 1 cut(s) | 190 |
| EarI | CTCTTC | 1 cut(s) | 190 |
| Eco130I | CCWWGG | 2 cut(s) | 432, 780 |
| Eco31I | GGTCTC | 1 cut(s) | 625 |
| Eco32I | GATATC | 1 cut(s) | 145 |
| Eco47III | AGCGCT | 1 cut(s) | 421 |
| Eco57I | CTGAAG | 1 cut(s) | 357 |
| Eco88I | CYCGRG | 1 cut(s) | 271 |
| EcoRI | GAATTC | 1 cut(s) | 152 |
| EcoRV | GATATC | 1 cut(s) | 145 |
| EcoT14I | CCWWGG | 2 cut(s) | 432, 780 |
| ErhI | CCWWGG | 2 cut(s) | 432, 780 |
| FaeI | CATG | 4 cut(s) | 23, 619, 691, 775 |
| FaqI | GGGAC | 1 cut(s) | 329 |
| FatI | CATG | 4 cut(s) | 19, 615, 687, 771 |
| FblI | GTMKAC | 1 cut(s) | 5 |
| Fnu4HI | GCNGC | 2 cut(s) | 329, 332 |
| FokI | GGATG | 2 cut(s) | 467, 776 |
| Fsp4HI | GCNGC | 2 cut(s) | 329, 332 |
| GlaI | GCGC | 2 cut(s) | 421, 742 |
| GluI | GCNGC | 2 cut(s) | 329, 332 |
| GsaI | CCCAGC | 2 cut(s) | 217, 938 |
| GsuI | CTGGAG | 2 cut(s) | 58, 189 |
| HaeII | RGCGCY | 1 cut(s) | 423 |
| HaeIII | GGCC | 2 cut(s) | 416, 800 |
| HapII | CCGG | 4 cut(s) | 11, 362, 711, 829 |
| HhaI | GCGC | 2 cut(s) | 422, 743 |
| Hin1II | CATG | 4 cut(s) | 23, 619, 691, 775 |
| Hin6I | GCGC | 2 cut(s) | 420, 741 |
| HinP1I | GCGC | 2 cut(s) | 420, 741 |
| HincII | GTYRAC | 3 cut(s) | 6, 54, 316 |
| HindII | GTYRAC | 3 cut(s) | 6, 54, 316 |
| HinfI | GANTC | 3 cut(s) | 7, 239, 878 |
| HpaII | CCGG | 4 cut(s) | 11, 362, 711, 829 |
| HphI | GGTGA | 3 cut(s) | 292, 604, 841 |
| Hpy166II | GTNNAC | 4 cut(s) | 6, 54, 316, 793 |
| Hpy188I | TCNGA | 3 cut(s) | 91, 549, 625 |
| Hpy188III | TCNNGA | 6 cut(s) | 75, 168, 273, 688, 872, 920 |
| Hpy8I | GTNNAC | 4 cut(s) | 6, 54, 316, 793 |
| HpyAV | CCTTC | 4 cut(s) | 241, 394, 655, 781 |
| HpyCH4III | ACNGT | 3 cut(s) | 103, 283, 520 |
| HpyCH4V | TGCA | 5 cut(s) | 23, 62, 674, 734, 902 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 257, 284, 389, 428, 572, 671, 680, 740, 908 |
| HpyF3I | CTNAG | 5 cut(s) | 445, 560, 654, 737, 759 |
| Hsp92II | CATG | 4 cut(s) | 23, 619, 691, 775 |
| HspAI | GCGC | 2 cut(s) | 420, 741 |
| Kzo9I | GATC | 2 cut(s) | 604, 819 |
| LmnI | GCTCC | 3 cut(s) | 248, 275, 713 |
| Lsp1109I | GCAGC | 1 cut(s) | 315 |
| LweI | GCATC | 2 cut(s) | 445, 499 |
| MaeIII | GTNAC | 4 cut(s) | 226, 298, 437, 523 |
| MalI | GATC | 2 cut(s) | 606, 821 |
| MboI | GATC | 2 cut(s) | 604, 819 |
| MboII | GAAGA | 3 cut(s) | 207, 550, 873 |
| MfeI | CAATTG | 1 cut(s) | 528 |
| MlsI | TGGCCA | 1 cut(s) | 416 |
| MluCI | AATT | 2 cut(s) | 152, 528 |
| MluNI | TGGCCA | 1 cut(s) | 416 |
| MlyI | GAGTC | 1 cut(s) | 887 |
| Mox20I | TGGCCA | 1 cut(s) | 416 |
| MroXI | GAANNNNTTC | 1 cut(s) | 42 |
| MscI | TGGCCA | 1 cut(s) | 416 |
| MseI | TTAA | 2 cut(s) | 462, 942 |
| MslI | CAYNNNNRTG | 2 cut(s) | 24, 873 |
| Msp20I | TGGCCA | 1 cut(s) | 416 |
| MspA1I | CMGCKG | 1 cut(s) | 575 |
| MspI | CCGG | 4 cut(s) | 11, 362, 711, 829 |
| MspR9I | CCNGG | 1 cut(s) | 362 |
| MunI | CAATTG | 1 cut(s) | 528 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 257, 284, 389, 428, 572, 671, 680, 740, 908 |
| NciI | CCSGG | 1 cut(s) | 362 |
| NdeII | GATC | 2 cut(s) | 604, 819 |
| NlaIII | CATG | 4 cut(s) | 23, 619, 691, 775 |
| NlaIV | GGNNCC | 2 cut(s) | 277, 894 |
| NmeAIII | GCCGAG | 1 cut(s) | 826 |
| NmuCI | GTSAC | 1 cut(s) | 298 |
| NspI | RCATGY | 1 cut(s) | 23 |
| PagI | TCATGA | 1 cut(s) | 687 |
| PdmI | GAANNNNTTC | 1 cut(s) | 42 |
| PfeI | GAWTC | 1 cut(s) | 239 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 541 |
| PkrI | GCNGC | 2 cut(s) | 330, 333 |
| PleI | GAGTC | 1 cut(s) | 886 |
| PpsI | GAGTC | 1 cut(s) | 886 |
| PshAI | GACNNNNGTC | 1 cut(s) | 842 |
| PsiI | TTATAA | 1 cut(s) | 324 |
| PspFI | CCCAGC | 2 cut(s) | 213, 934 |
| PspN4I | GGNNCC | 2 cut(s) | 277, 894 |
| PspPI | GGNCC | 1 cut(s) | 798 |
| PstI | CTGCAG | 1 cut(s) | 904 |
| PstNI | CAGNNNCTG | 2 cut(s) | 410, 680 |
| PvuII | CAGCTG | 1 cut(s) | 575 |
| RseI | CAYNNNNRTG | 2 cut(s) | 24, 873 |
| SalI | GTCGAC | 1 cut(s) | 4 |
| SaqAI | TTAA | 2 cut(s) | 462, 942 |
| SatI | GCNGC | 2 cut(s) | 329, 332 |
| Sau3AI | GATC | 2 cut(s) | 604, 819 |
| Sau96I | GGNCC | 1 cut(s) | 798 |
| SchI | GAGTC | 1 cut(s) | 887 |
| ScrFI | CCNGG | 1 cut(s) | 362 |
| SfaNI | GCATC | 2 cut(s) | 445, 499 |
| SfcI | CTRYAG | 1 cut(s) | 900 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 24, 873 |
| SmlI | CTYRAG | 1 cut(s) | 123 |
| SmoI | CTYRAG | 1 cut(s) | 123 |
| Sse9I | AATT | 2 cut(s) | 152, 528 |
| SsiI | CCGC | 1 cut(s) | 332 |
| StyD4I | CCNGG | 1 cut(s) | 360 |
| StyI | CCWWGG | 2 cut(s) | 432, 780 |
| TaaI | ACNGT | 3 cut(s) | 103, 283, 520 |
| TaqI | TCGA | 2 cut(s) | 5, 822 |
| TasI | AATT | 2 cut(s) | 152, 528 |
| TauI | GCSGC | 1 cut(s) | 334 |
| TfiI | GAWTC | 1 cut(s) | 239 |
| Tru1I | TTAA | 2 cut(s) | 462, 942 |
| Tru9I | TTAA | 2 cut(s) | 462, 942 |
| TscAI | CASTG | 1 cut(s) | 676 |
| TseFI | GTSAC | 1 cut(s) | 298 |
| TseI | GCWGC | 1 cut(s) | 328 |
| Tsp45I | GTSAC | 1 cut(s) | 298 |
| TspDTI | ATGAA | 3 cut(s) | 150, 600, 604 |
| TspGWI | ACGGA | 1 cut(s) | 854 |
| TspRI | CASTG | 1 cut(s) | 676 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 541 |
| XapI | RAATTY | 1 cut(s) | 152 |
| XceI | RCATGY | 1 cut(s) | 23 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 787 |
| XmiI | GTMKAC | 1 cut(s) | 5 |
| XmnI | GAANNNNTTC | 1 cut(s) | 42 |