pycom13g01530

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0010838
Physical Location & Seq
Forward (+)
1012488 .. 1017227
4740 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g01530.8

Sequence Viewer

Length: 1608 bp
ATGGTAGGCTGCAAGGTTTGCATAAATAAAAACAGAAGAGATCATTGGCTTAACACCCTTTTGCTTAGCAAATTCTTCGGTTCCTGCGGTGTTCATCAACACCTTCGGAAAAACGAGAAGAATGTGTTCTGCATAGACTGCAGCCTCCGCCTCTGCAGGCATTGTATGACATTTCATTGCCTTCACAAAAAGCTTCAGATCTGCAAATACGTTTATCATGATGTCGTTCGCCTTCAAGAAATTCAGAAGCATCTTGACTGCTCCAAAATTCAGACATATAAAATCAATGGCGAGAAAGCTGTGCATCTAAATTCTCGTCCTCAATCCAAAGACGCGAAACCATCAACAAAAGCAAAGTTTGGTGCTTCCTGTGAAGCTTGTGGGAGATATCTACAGGACATGCCAAATCACTACTGCTCCATCGCATGCAAGGTATCGATAGTTTCAGTGAAGCCGAAAGACCACCAAAGTCACAAATTCATCACCGTTGCAATGCGCGAATACGCTGAATTTTCGCCAAAAGGTAACTACAATTCGGAAACAAATATGAGTGAAATGGAATCATCGTCTATCTCGTTAGCTGAGTCATCTGAGGGGATGAATGCTTGGGTGTGTCCAGCATTGAAGCCGAGGAGGCTTTTGCACAAGAGGAAAGGCATTCCTCGCAGAACTCCGGCGGAACCTGCAAATGAGGGGATTGAAGCACTTCCCCAGTCAACAGCTCCCACACAAATCTCCTCAACCAAACCTTCAGACATAAAAACAGTTCAAGTTAGCAACATCTCGCAAGCCATTACTGACAGGGATATCAAGGAGTTCTGTTCATTTTCTGGAGATATTCAATATGTTGAAATGCAACGGGAAACGGAAAATACACAGCTCGCCTACGTTACCTTCAAGGAATCGCAAGGGGCAGATACAGCAGTTCTTCTGTCGGGAGCTACCGTAGCTGATCTTGCTGTCACCATTAGACCCGCCAAGGATTACAAGCTGCCTCCTGAAGCTATTCCGCTCCCATCAAGCCCGGAGAAAAAGCTGGTTGCTGCTAGTTCTGCTGTAAAGAAGGCAGAAGATGTGGCCAGCGCTATGCTCGCCAAGGGATACACCTTAGGAAAGGATGCCATTAACAAGGCGAAGGAGTTTGACGAGAGGCATAAGTTGACATCAAATGCCTCTGCCACAGTTGTTTCGATTAACCAGAAGATGGGGCTGACGGAGAAGCTAAGTGCCGGAACAGCTGTTGTAAGCGAAAAGGTGAAAGAAATGGATCAAAGGTTCATGGTATCCGAAAAGACAAAGTCTGCCTTTGCTGTTGCTGAGCAGAAGGCAAGCAGCGCGGGATCTGCTATCATGAGCAACCCTTATGTATTGACCGGGGCTTCTTGGGTTTCAAACGCACTCAGCGCAGTTGCAAAGGTGGCTGATGATGTGGGCATGATGACCAACGAGAAGGTGGAGAGGGCCGAGGAGGAAAAGAAGGAGATCATGGACAGGCAGAGGACAGAGATCATCACTGACTTTGCCCAGACCCATCTCGACGAGTCTTCTGCTCCCAAGCCTTCTCTTCCGGTCAGTTCTCCCGATGACATGAAGGCTGGAGTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

536

Amino Acids

59.01

Weight (kDa)

8.91

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010838)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67950 AT1G67950 AT1G67950 AT1G67950
fragaria_vesca FvH4_4g33260
malus_domestica MD13G1017900.v1.1 MD16G1015900.v1.1
prunus_persica Prupe.1G335700_v2.0.a1
pyrus_communis pycom13g01530 pycom16g01480
rosa_chinensis RchiOBHm_Chr4g0442411
rosa_laevigata RLG00000006012
rosa_multiflora Rmu_ssc0000204.1_g000062
rosa_roxburghii Rroxscaffold_5G00383250
rosa_rugosa Rorug04G0340900
rosa_samantha Rh4AG392600 Rh4BG406200 Rh4CG421400 Rh4DG399400
rosa_wichuraiana Rw4G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 691
AccB7I CCANNNNNTGG 1 cut(s) 1204
AccBSI CCGCTC 1 cut(s) 1012
AccII CGCG 3 cut(s) 335, 498, 1337
AciI CCGC 6 cut(s) 87, 148, 677, 975, 1010, 1337
AclWI GGATC 2 cut(s) 1275, 1348
AcoI YGGCCR 1 cut(s) 1077
AcsI RAATTY 6 cut(s) 71, 240, 267, 310, 476, 509
AcuI CTGAAG 3 cut(s) 179, 735, 1020
AfeI AGCGCT 1 cut(s) 1084
AfiI CCNNNNNNNGG 1 cut(s) 1204
AgsI TTSAA 8 cut(s) 236, 625, 701, 770, 842, 851, 898, 1392
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AloI GAACNNNNNNTCC 2 cut(s) 1259, 1291
AlwI GGATC 2 cut(s) 1275, 1348
Aor51HI AGCGCT 1 cut(s) 1084
AoxI GGCC 2 cut(s) 1077, 1461
ApeKI GCWGC 5 cut(s) 9, 141, 991, 1043, 1332
ApoI RAATTY 6 cut(s) 71, 240, 267, 310, 476, 509
Asp700I GAANNNNTTC 3 cut(s) 125, 705, 1005
AspLEI GCGC 4 cut(s) 498, 1085, 1337, 1406
AspS9I GGNCC 1 cut(s) 1461
AsuC2I CCSGG 2 cut(s) 1025, 1375
AsuHPI GGTGA 3 cut(s) 475, 955, 1267
AxyI CCTNAGG 1 cut(s) 1108
BaeI ACNNNNGTAYC 2 cut(s) 909, 942
BalI TGGCCA 1 cut(s) 1079
BbsI GAAGAC 1 cut(s) 1536
BbvI GCAGC 4 cut(s) 153, 978, 1030, 1344
BccI CCATC 5 cut(s) 349, 428, 1024, 1198, 1539
BcgI CGANNNNNNTGC 4 cut(s) 58, 92, 1529, 1563
BciVI GTATCC 2 cut(s) 1094, 1294
BcnI CCSGG 2 cut(s) 1025, 1375
BfaI CTAG 1 cut(s) 1047
BfmI CTRYAG 3 cut(s) 139, 154, 392
BfoI RGCGCY 1 cut(s) 1086
BfuAI ACCTGC 1 cut(s) 691
BfuI GTATCC 2 cut(s) 1094, 1294
BglI GCCNNNNNGGC 1 cut(s) 634
BglII AGATCT 1 cut(s) 198
BisI GCNGC 5 cut(s) 10, 142, 992, 1044, 1333
BlpI GCTNAGC 2 cut(s) 65, 1317
BlsI GCNGC 5 cut(s) 11, 143, 993, 1045, 1334
Bme1390I CCNGG 2 cut(s) 1025, 1375
BmgT120I GGNCC 1 cut(s) 1461
BmiI GGNNCC 2 cut(s) 82, 681
BmrFI CCNGG 2 cut(s) 1025, 1375
BmrI ACTGGG 1 cut(s) 706
BmsI GCATC 3 cut(s) 259, 313, 1108
BmuI ACTGGG 1 cut(s) 706
BpiI GAAGAC 1 cut(s) 1536
BpmI CTGGAG 1 cut(s) 852
Bpu1102I GCTNAGC 2 cut(s) 65, 1317
BpuMI CCSGG 2 cut(s) 1025, 1375
Bsa29I ATCGAT 1 cut(s) 437
BsaJI CCNNGG 5 cut(s) 629, 978, 1095, 1374, 1464
BsaWI WCCGGW 1 cut(s) 1567
BsaXI ACNNNNNCTCC 4 cut(s) 401, 431, 930, 960
Bsc4I CCNNNNNNNGG 1 cut(s) 1204
Bse1I ACTGG 1 cut(s) 712
Bse21I CCTNAGG 1 cut(s) 1108
Bse3DI GCAATG 2 cut(s) 175, 498
BseCI ATCGAT 1 cut(s) 437
BseDI CCNNGG 5 cut(s) 629, 978, 1095, 1374, 1464
BseGI GGATG 2 cut(s) 603, 1123
BseLI CCNNNNNNNGG 1 cut(s) 1204
BseMI GCAATG 2 cut(s) 175, 498
BseMII CTCAG 4 cut(s) 573, 582, 1308, 1414
BseNI ACTGG 1 cut(s) 712
BseRI GAGGAG 3 cut(s) 646, 727, 1481
BseXI GCAGC 4 cut(s) 153, 978, 1030, 1344
Bsh1236I CGCG 3 cut(s) 335, 498, 1337
BshFI GGCC 2 cut(s) 1079, 1463
BshVI ATCGAT 1 cut(s) 437
BsiSI CCGG 5 cut(s) 674, 1025, 1230, 1374, 1568
BslI CCNNNNNNNGG 1 cut(s) 1204
BsmI GAATGC 2 cut(s) 607, 657
BsnI GGCC 2 cut(s) 1079, 1463
Bsp143I GATC 7 cut(s) 40, 198, 952, 1267, 1340, 1482, 1506
Bsp1720I GCTNAGC 2 cut(s) 65, 1317
BspACI CCGC 6 cut(s) 87, 148, 677, 975, 1010, 1337
BspANI GGCC 2 cut(s) 1079, 1463
BspCNI CTCAG 4 cut(s) 574, 583, 1309, 1413
BspDI ATCGAT 1 cut(s) 437
BspFNI CGCG 3 cut(s) 335, 498, 1337
BspHI TCATGA 2 cut(s) 217, 1350
BspLI GGNNCC 2 cut(s) 82, 681
BspMAI CTGCAG 2 cut(s) 143, 158
BspMI ACCTGC 1 cut(s) 691
BspPI GGATC 2 cut(s) 1275, 1348
BsrBI CCGCTC 1 cut(s) 1012
BsrDI GCAATG 2 cut(s) 175, 498
BsrI ACTGG 1 cut(s) 712
BssECI CCNNGG 5 cut(s) 629, 978, 1095, 1374, 1464
BssMI GATC 7 cut(s) 40, 198, 952, 1267, 1340, 1482, 1506
BssT1I CCWWGG 2 cut(s) 978, 1095
Bst4CI ACNGT 4 cut(s) 487, 766, 946, 1183
Bst6I CTCTTC 2 cut(s) 31, 1569
BstAPI GCANNNNNTGC 2 cut(s) 18, 138
BstC8I GCNNGC 7 cut(s) 158, 427, 789, 882, 1081, 1092, 1330
BstDEI CTNAG 7 cut(s) 65, 582, 591, 1108, 1223, 1317, 1400
BstF5I GGATG 2 cut(s) 603, 1123
BstFNI CGCG 3 cut(s) 335, 498, 1337
BstH2I RGCGCY 1 cut(s) 1086
BstHHI GCGC 4 cut(s) 498, 1085, 1337, 1406
BstKTI GATC 7 cut(s) 43, 201, 955, 1270, 1343, 1485, 1509
BstMBI GATC 7 cut(s) 40, 198, 952, 1267, 1340, 1482, 1506
BstNSI RCATGY 2 cut(s) 403, 429
BstSCI CCNGG 2 cut(s) 1023, 1373
BstSFI CTRYAG 3 cut(s) 139, 154, 392
BstUI CGCG 3 cut(s) 335, 498, 1337
BstV1I GCAGC 4 cut(s) 153, 978, 1030, 1344
BstV2I GAAGAC 1 cut(s) 1536
BstX2I RGATCY 2 cut(s) 198, 1340
BstYI RGATCY 2 cut(s) 198, 1340
Bsu15I ATCGAT 1 cut(s) 437
Bsu36I CCTNAGG 1 cut(s) 1108
BsuI GTATCC 2 cut(s) 1094, 1294
BsuRI GGCC 2 cut(s) 1079, 1463
BsuTUI ATCGAT 1 cut(s) 437
BtgZI GCGATG 1 cut(s) 406
BtsCI GGATG 2 cut(s) 603, 1123
BtsIMutI CAGTG 2 cut(s) 453, 1512
BveI ACCTGC 1 cut(s) 691
Cac8I GCNNGC 7 cut(s) 158, 427, 789, 882, 1081, 1092, 1330
CciI TCATGA 2 cut(s) 217, 1350
CfoI GCGC 4 cut(s) 498, 1085, 1337, 1406
Cfr13I GGNCC 1 cut(s) 1461
ClaI ATCGAT 1 cut(s) 437
CseI GACGC 1 cut(s) 341
CviAII CATG 8 cut(s) 218, 400, 426, 1279, 1351, 1435, 1486, 1588
DdeI CTNAG 7 cut(s) 65, 582, 591, 1108, 1223, 1317, 1400
DpnI GATC 7 cut(s) 42, 200, 954, 1269, 1342, 1484, 1508
DpnII GATC 7 cut(s) 40, 198, 952, 1267, 1340, 1482, 1506
EaeI YGGCCR 1 cut(s) 1077
Eam1104I CTCTTC 2 cut(s) 31, 1569
EarI CTCTTC 2 cut(s) 31, 1569
EciI GGCGGA 2 cut(s) 137, 692
Eco130I CCWWGG 2 cut(s) 978, 1095
Eco32I GATATC 2 cut(s) 389, 808
Eco47III AGCGCT 1 cut(s) 1084
Eco57I CTGAAG 3 cut(s) 179, 735, 1020
Eco81I CCTNAGG 1 cut(s) 1108
EcoRV GATATC 2 cut(s) 389, 808
EcoT14I CCWWGG 2 cut(s) 978, 1095
ErhI CCWWGG 2 cut(s) 978, 1095
FaeI CATG 8 cut(s) 221, 403, 429, 1282, 1354, 1438, 1489, 1591
FalI AAGNNNNNCTT 2 cut(s) 1289, 1321
FatI CATG 8 cut(s) 217, 399, 425, 1278, 1350, 1434, 1485, 1587
FauI CCCGC 2 cut(s) 982, 1330
Fnu4HI GCNGC 5 cut(s) 10, 142, 992, 1044, 1333
FokI GGATG 2 cut(s) 610, 1130
Fsp4HI GCNGC 5 cut(s) 10, 142, 992, 1044, 1333
FspBI CTAG 1 cut(s) 1047
GlaI GCGC 4 cut(s) 497, 1084, 1336, 1405
GluI GCNGC 5 cut(s) 10, 142, 992, 1044, 1333
GsuI CTGGAG 1 cut(s) 852
HaeII RGCGCY 1 cut(s) 1086
HaeIII GGCC 2 cut(s) 1079, 1463
HapII CCGG 5 cut(s) 674, 1025, 1230, 1374, 1568
HgaI GACGC 1 cut(s) 341
HhaI GCGC 4 cut(s) 498, 1085, 1337, 1406
Hin1II CATG 8 cut(s) 221, 403, 429, 1282, 1354, 1438, 1489, 1591
Hin6I GCGC 4 cut(s) 496, 1083, 1335, 1404
HinP1I GCGC 4 cut(s) 496, 1083, 1335, 1404
HincII GTYRAC 2 cut(s) 717, 1161
HindII GTYRAC 2 cut(s) 717, 1161
HindIII AAGCTT 2 cut(s) 191, 375
HinfI GANTC 4 cut(s) 560, 584, 902, 1541
HpaII CCGG 5 cut(s) 674, 1025, 1230, 1374, 1568
HphI GGTGA 3 cut(s) 475, 955, 1267
Hpy166II GTNNAC 2 cut(s) 717, 1161
Hpy188I TCNGA 8 cut(s) 108, 198, 246, 273, 538, 592, 754, 1288
Hpy188III TCNNGA 9 cut(s) 218, 236, 254, 831, 936, 998, 1351, 1535, 1580
Hpy8I GTNNAC 2 cut(s) 717, 1161
Hpy99I CGWCG 1 cut(s) 1541
HpyCH4III ACNGT 4 cut(s) 487, 766, 946, 1183
HpyCH4IV ACGT 2 cut(s) 210, 888
HpyF3I CTNAG 7 cut(s) 65, 582, 591, 1108, 1223, 1317, 1400
HpySE526I ACGT 2 cut(s) 210, 888
Hsp92II CATG 8 cut(s) 221, 403, 429, 1282, 1354, 1438, 1489, 1591
HspAI GCGC 4 cut(s) 496, 1083, 1335, 1404
Kzo9I GATC 7 cut(s) 40, 198, 952, 1267, 1340, 1482, 1506
LmnI GCTCC 6 cut(s) 266, 422, 727, 938, 1017, 1555
Lsp1109I GCAGC 4 cut(s) 153, 978, 1030, 1344
LweI GCATC 3 cut(s) 259, 313, 1108
MaeI CTAG 1 cut(s) 1047
MaeII ACGT 2 cut(s) 210, 888
MaeIII GTNAC 4 cut(s) 470, 524, 889, 961
MalI GATC 7 cut(s) 42, 200, 954, 1269, 1342, 1484, 1508
MbiI CCGCTC 1 cut(s) 1012
MboI GATC 7 cut(s) 40, 198, 952, 1267, 1340, 1482, 1506
MboII GAAGA 8 cut(s) 48, 67, 130, 920, 1082, 1213, 1536, 1556
MflI RGATCY 2 cut(s) 198, 1340
MlsI TGGCCA 1 cut(s) 1079
MluCI AATT 7 cut(s) 71, 240, 267, 310, 476, 509, 532
MluNI TGGCCA 1 cut(s) 1079
MlyI GAGTC 2 cut(s) 593, 1550
Mox20I TGGCCA 1 cut(s) 1079
MroXI GAANNNNTTC 3 cut(s) 125, 705, 1005
MscI TGGCCA 1 cut(s) 1079
MseI TTAA 4 cut(s) 51, 1125, 1194, 1602
Msp20I TGGCCA 1 cut(s) 1079
MspA1I CMGCKG 1 cut(s) 1238
MspI CCGG 5 cut(s) 674, 1025, 1230, 1374, 1568
MspR9I CCNGG 2 cut(s) 1025, 1375
Mva1269I GAATGC 2 cut(s) 607, 657
MvnI CGCG 3 cut(s) 335, 498, 1337
NciI CCSGG 2 cut(s) 1025, 1375
NdeII GATC 7 cut(s) 40, 198, 952, 1267, 1340, 1482, 1506
NlaIII CATG 8 cut(s) 221, 403, 429, 1282, 1354, 1438, 1489, 1591
NlaIV GGNNCC 2 cut(s) 82, 681
NmeAIII GCCGAG 2 cut(s) 654, 1489
NmuCI GTSAC 2 cut(s) 470, 961
NspI RCATGY 2 cut(s) 403, 429
PaeI GCATGC 1 cut(s) 429
PagI TCATGA 2 cut(s) 217, 1350
PcsI WCGNNNNNNNCGW 1 cut(s) 572
PctI GAATGC 2 cut(s) 607, 657
PdmI GAANNNNTTC 3 cut(s) 125, 705, 1005
PfeI GAWTC 2 cut(s) 560, 902
PflFI GACNNNGTC 1 cut(s) 1297
PflMI CCANNNNNTGG 1 cut(s) 1204
PkrI GCNGC 5 cut(s) 11, 143, 993, 1045, 1334
PleI GAGTC 2 cut(s) 592, 1549
PpsI GAGTC 2 cut(s) 592, 1549
PspN4I GGNNCC 2 cut(s) 82, 681
PspPI GGNCC 1 cut(s) 1461
PstI CTGCAG 2 cut(s) 143, 158
PsuI RGATCY 2 cut(s) 198, 1340
PsyI GACNNNGTC 1 cut(s) 1297
PvuII CAGCTG 1 cut(s) 1238
SaqAI TTAA 4 cut(s) 51, 1125, 1194, 1602
SatI GCNGC 5 cut(s) 10, 142, 992, 1044, 1333
Sau3AI GATC 7 cut(s) 40, 198, 952, 1267, 1340, 1482, 1506
Sau96I GGNCC 1 cut(s) 1461
SchI GAGTC 2 cut(s) 593, 1550
ScrFI CCNGG 2 cut(s) 1025, 1375
SfaNI GCATC 3 cut(s) 259, 313, 1108
SfcI CTRYAG 3 cut(s) 139, 154, 392
SphI GCATGC 1 cut(s) 429
Sse9I AATT 7 cut(s) 71, 240, 267, 310, 476, 509, 532
SsiI CCGC 6 cut(s) 87, 148, 677, 975, 1010, 1337
SspMI CTAG 1 cut(s) 1047
StyD4I CCNGG 2 cut(s) 1023, 1373
StyI CCWWGG 2 cut(s) 978, 1095
TaaI ACNGT 4 cut(s) 487, 766, 946, 1183
TaiI ACGT 2 cut(s) 213, 891
TaqI TCGA 3 cut(s) 437, 1190, 1536
TasI AATT 7 cut(s) 71, 240, 267, 310, 476, 509, 532
TfiI GAWTC 2 cut(s) 560, 902
Tru1I TTAA 4 cut(s) 51, 1125, 1194, 1602
Tru9I TTAA 4 cut(s) 51, 1125, 1194, 1602
TscAI CASTG 2 cut(s) 453, 1519
TseFI GTSAC 2 cut(s) 470, 961
TseI GCWGC 5 cut(s) 9, 141, 991, 1043, 1332
Tsp45I GTSAC 2 cut(s) 470, 961
TspDTI ATGAA 7 cut(s) 83, 164, 469, 614, 813, 1267, 1604
TspGWI ACGGA 2 cut(s) 881, 1229
TspRI CASTG 2 cut(s) 453, 1519
Tth111I GACNNNGTC 1 cut(s) 1297
Van91I CCANNNNNTGG 1 cut(s) 1204
XapI RAATTY 6 cut(s) 71, 240, 267, 310, 476, 509
XceI RCATGY 2 cut(s) 403, 429
XcmI CCANNNNNNNNNTGG 1 cut(s) 1450
XmnI GAANNNNTTC 3 cut(s) 125, 705, 1005
XspI CTAG 1 cut(s) 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.