RLG00000006012

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010838
Physical Location & Seq
Reverse (-)
3513784 .. 3515346
1563 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006012

Sequence Viewer

Length: 1008 bp
ATGCATTTACTTTTTGTTAATCTGGAGGTTTTGCTTCAATTTCAAGTAATCAATCGAAAAGATTCGGTGCAGGCTCCGGCGGACAATGTAAATCAGGGGATCGGAGAAGCTCCCCAGTCAGCTGCCACACCCAACAGCACAATTGATGTCTCAGATGTGAAGACGATTAAAGTTGGCAACATTTCACGAATTGTTAACGACAGAGATATCAGAGAATTCTTTTCATTTTCTGGAGAAATTAGATATGTTGAAATGCAAAGAGAAACCGAAAACACCCAACTTTCTTATGTCACCTTTAATGATGCACAAGGTGCAGATACAGCGATTCTCCTGTCGGGAGCCACCATAGGTAATCTGCCTGTCACTGTTGCACCTGCTAAGGAATACCAGCTGCCGCCGGAAGCTCTCATCCCATCAAGCTCGTTGAAAAAGGCAGCAGTAACTAGTTCTGCTCTAGAGAAGGCAGAAGATGTGGTCAGCACTATGGCTGCCAAGGGTTACATCTTGGGAAAGGATGCCCTTAGCAAGGCAAAAGCATTCGACGAGCAACATAACTTGACGTCCAAGGCATCGGCCACGGTTGTTTCCATTGATCAGAGGATCGGTCTGATGGAGAAAATAAGCATGGGAAGAGCTGTTGTCAATGAAAAGGTGAAACAGATGGATGAACGGTTCTTGGTCTCCGAAAAGACCAAATCTGTCTTTGCTGTTGCTGAGCAGACGGCAAGCAGTGCAGGATCTGCTATAATGAGCAACCCTTACGTAATTAGTGGAGCTTCGTGGGTTTCGAATGCTCTGAGTGTATTTGCAAAGGCAGCTGAGGATGTGACCACGAAAACCAAGGAGAAGGTTGTTAGGGCCGAGGAGGAGAAACAGGAGACCATGATCAGGCAGAGGACAGCGATCATCAATGACTATGCACAGAACCATCTTGATGAACCATCTGGAAATGAGCTTCCGGTAGTTCAAACAAAATCTGCTGATGACACAGGGCCTGGACTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

336

Amino Acids

36.17

Weight (kDa)

5.16

Isoelectric Point (pI)

31.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 57 - 120 8.6e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010838)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67950 AT1G67950 AT1G67950 AT1G67950
fragaria_vesca FvH4_4g33260
malus_domestica MD13G1017900.v1.1 MD16G1015900.v1.1
prunus_persica Prupe.1G335700_v2.0.a1
pyrus_communis pycom13g01530 pycom16g01480
rosa_chinensis RchiOBHm_Chr4g0442411
rosa_laevigata RLG00000006012
rosa_multiflora Rmu_ssc0000204.1_g000062
rosa_roxburghii Rroxscaffold_5G00383250
rosa_rugosa Rorug04G0340900
rosa_samantha Rh4AG392600 Rh4BG406200 Rh4CG421400 Rh4DG399400
rosa_wichuraiana Rw4G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 382
AatII GACGTC 1 cut(s) 563
Acc36I ACCTGC 1 cut(s) 382
AciI CCGC 2 cut(s) 80, 395
AclWI GGATC 3 cut(s) 107, 608, 745
AcoI YGGCCR 1 cut(s) 573
AcsI RAATTY 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 560
AdeI CACNNNGTG 1 cut(s) 311
AfiI CCNNNNNNNGG 2 cut(s) 526, 888
AgsI TTSAA 5 cut(s) 38, 44, 251, 427, 968
AhlI ACTAGT 1 cut(s) 443
AjnI CCWGG 1 cut(s) 994
AloI GAACNNNNNNTCC 2 cut(s) 656, 688
AluBI AGCT 9 cut(s) 110, 122, 391, 404, 420, 635, 776, 818, 955
AluI AGCT 9 cut(s) 110, 122, 391, 404, 420, 635, 776, 818, 955
Alw26I GTCTC 3 cut(s) 154, 685, 872
AlwI GGATC 3 cut(s) 107, 608, 745
AlwNI CAGNNNCTG 2 cut(s) 740, 995
AoxI GGCC 3 cut(s) 573, 858, 992
ApeKI GCWGC 5 cut(s) 122, 391, 434, 488, 815
ApoI RAATTY 1 cut(s) 215
Asp700I GAANNNNTTC 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 858, 992
AsuHPI GGTGA 2 cut(s) 283, 664
AsuII TTCGAA 1 cut(s) 788
BbsI GAAGAC 1 cut(s) 167
BbvCI CCTCAGC 1 cut(s) 819
BbvI GCAGC 5 cut(s) 109, 378, 446, 475, 827
BccI CCATC 5 cut(s) 421, 604, 655, 936, 949
BceAI ACGGC 1 cut(s) 738
BciT130I CCWGG 1 cut(s) 996
BclI TGATCA 2 cut(s) 592, 885
BcoDI GTCTC 3 cut(s) 154, 685, 872
BcuI ACTAGT 1 cut(s) 443
BfaI CTAG 2 cut(s) 444, 455
BfuAI ACCTGC 1 cut(s) 382
BisI GCNGC 6 cut(s) 123, 392, 395, 435, 489, 816
BlpI GCTNAGC 1 cut(s) 714
BlsI GCNGC 6 cut(s) 124, 393, 396, 436, 490, 817
Bme1390I CCNGG 1 cut(s) 996
BmgT120I GGNCC 2 cut(s) 858, 992
BmiI GGNNCC 2 cut(s) 75, 340
BmrFI CCNGG 1 cut(s) 996
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 3 cut(s) 292, 505, 578
BmuI ACTGGG 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 167
BpmI CTGGAG 2 cut(s) 44, 252
Bpu10I CCTNAGC 3 cut(s) 378, 521, 819
Bpu1102I GCTNAGC 1 cut(s) 714
Bpu14I TTCGAA 1 cut(s) 788
BsaAI YACGTR 1 cut(s) 763
BsaHI GRCGYC 1 cut(s) 560
BsaI GGTCTC 2 cut(s) 685, 872
BsaJI CCNNGG 5 cut(s) 492, 564, 576, 840, 861
BsaWI WCCGGW 1 cut(s) 958
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 888
Bse1I ACTGG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 996
BseDI CCNNGG 5 cut(s) 492, 564, 576, 840, 861
BseGI GGATG 4 cut(s) 408, 520, 670, 829
BseLI CCNNNNNNNGG 2 cut(s) 526, 888
BseMII CTCAG 4 cut(s) 165, 705, 788, 810
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 2 cut(s) 878, 881
BseXI GCAGC 5 cut(s) 109, 378, 446, 475, 827
BsgI GTGCAG 3 cut(s) 89, 333, 753
BshFI GGCC 3 cut(s) 575, 860, 994
BsiSI CCGG 3 cut(s) 77, 398, 959
BslI CCNNNNNNNGG 2 cut(s) 526, 888
BsmAI GTCTC 3 cut(s) 154, 685, 872
BsmI GAATGC 2 cut(s) 536, 796
BsnI GGCC 3 cut(s) 575, 860, 994
Bso31I GGTCTC 2 cut(s) 685, 872
Bsp119I TTCGAA 1 cut(s) 788
Bsp143I GATC 6 cut(s) 99, 592, 600, 737, 885, 903
Bsp1720I GCTNAGC 1 cut(s) 714
BspACI CCGC 2 cut(s) 80, 395
BspANI GGCC 3 cut(s) 575, 860, 994
BspCNI CTCAG 4 cut(s) 164, 706, 789, 811
BspLI GGNNCC 2 cut(s) 75, 340
BspMI ACCTGC 1 cut(s) 382
BspPI GGATC 3 cut(s) 107, 608, 745
BspQI GCTCTTC 1 cut(s) 625
BspT104I TTCGAA 1 cut(s) 788
BspTNI GGTCTC 2 cut(s) 685, 872
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 5 cut(s) 492, 564, 576, 840, 861
BssMI GATC 6 cut(s) 99, 592, 600, 737, 885, 903
BssNI GRCGYC 1 cut(s) 560
BssT1I CCWWGG 3 cut(s) 492, 564, 840
Bst2UI CCWGG 1 cut(s) 996
Bst4CI ACNGT 3 cut(s) 367, 580, 672
Bst6I CTCTTC 1 cut(s) 625
BstACI GRCGYC 1 cut(s) 560
BstAPI GCANNNNNTGC 3 cut(s) 311, 731, 740
BstBAI YACGTR 1 cut(s) 763
BstBI TTCGAA 1 cut(s) 788
BstC8I GCNNGC 2 cut(s) 72, 727
BstDEI CTNAG 6 cut(s) 151, 378, 521, 714, 797, 819
BstDSI CCRYGG 1 cut(s) 576
BstENI CCTNNNNNAGG 1 cut(s) 524
BstF5I GGATG 4 cut(s) 408, 520, 670, 829
BstKTI GATC 6 cut(s) 102, 595, 603, 740, 888, 906
BstMAI GTCTC 3 cut(s) 154, 685, 872
BstMBI GATC 6 cut(s) 99, 592, 600, 737, 885, 903
BstMWI GCNNNNNNNGC 5 cut(s) 311, 320, 731, 740, 815
BstNI CCWGG 1 cut(s) 996
BstSCI CCNGG 1 cut(s) 994
BstSNI TACGTA 1 cut(s) 763
BstV1I GCAGC 5 cut(s) 109, 378, 446, 475, 827
BstV2I GAAGAC 1 cut(s) 167
BstX2I RGATCY 1 cut(s) 737
BstYI RGATCY 1 cut(s) 737
BsuRI GGCC 3 cut(s) 575, 860, 994
BtgI CCRYGG 1 cut(s) 576
BtsCI GGATG 4 cut(s) 408, 520, 670, 829
BtsI GCAGTG 1 cut(s) 736
BtsIMutI CAGTG 2 cut(s) 363, 736
BveI ACCTGC 1 cut(s) 382
Cac8I GCNNGC 2 cut(s) 72, 727
CaiI CAGNNNCTG 2 cut(s) 740, 995
Cfr13I GGNCC 2 cut(s) 858, 992
CviAII CATG 2 cut(s) 625, 883
DdeI CTNAG 6 cut(s) 151, 378, 521, 714, 797, 819
DpnI GATC 6 cut(s) 101, 594, 602, 739, 887, 905
DpnII GATC 6 cut(s) 99, 592, 600, 737, 885, 903
DraIII CACNNNGTG 1 cut(s) 311
EaeI YGGCCR 1 cut(s) 573
Eam1104I CTCTTC 1 cut(s) 625
EarI CTCTTC 1 cut(s) 625
EciI GGCGGA 1 cut(s) 95
Eco105I TACGTA 1 cut(s) 763
Eco130I CCWWGG 3 cut(s) 492, 564, 840
Eco31I GGTCTC 2 cut(s) 685, 872
Eco32I GATATC 1 cut(s) 208
EcoNI CCTNNNNNAGG 1 cut(s) 524
EcoO109I RGGNCCY 1 cut(s) 992
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 994
EcoRV GATATC 1 cut(s) 208
EcoT14I CCWWGG 3 cut(s) 492, 564, 840
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 492, 564, 840
FaeI CATG 2 cut(s) 628, 886
FatI CATG 2 cut(s) 624, 882
FbaI TGATCA 2 cut(s) 592, 885
Fnu4HI GCNGC 6 cut(s) 123, 392, 395, 435, 489, 816
FokI GGATG 4 cut(s) 395, 527, 677, 836
Fsp4HI GCNGC 6 cut(s) 123, 392, 395, 435, 489, 816
FspBI CTAG 2 cut(s) 444, 455
GluI GCNGC 6 cut(s) 123, 392, 395, 435, 489, 816
GsuI CTGGAG 2 cut(s) 44, 252
HaeIII GGCC 3 cut(s) 575, 860, 994
HapII CCGG 3 cut(s) 77, 398, 959
Hin1I GRCGYC 1 cut(s) 560
Hin1II CATG 2 cut(s) 628, 886
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 2 cut(s) 62, 325
HpaI GTTAAC 1 cut(s) 196
HpaII CCGG 3 cut(s) 77, 398, 959
HphI GGTGA 2 cut(s) 283, 664
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 7 cut(s) 104, 154, 212, 597, 609, 685, 798
Hpy188III TCNNGA 7 cut(s) 23, 186, 231, 336, 455, 932, 945
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 1 cut(s) 545
HpyAV CCTTC 2 cut(s) 454, 841
HpyCH4III ACNGT 3 cut(s) 367, 580, 672
HpyCH4IV ACGT 2 cut(s) 560, 762
HpyCH4V TGCA 9 cut(s) 4, 70, 256, 305, 314, 371, 734, 809, 920
HpyF10VI GCNNNNNNNGC 5 cut(s) 311, 320, 731, 740, 815
HpyF3I CTNAG 6 cut(s) 151, 378, 521, 714, 797, 819
HpySE526I ACGT 2 cut(s) 560, 762
Hsp92I GRCGYC 1 cut(s) 560
Hsp92II CATG 2 cut(s) 628, 886
Ksp22I TGATCA 2 cut(s) 592, 885
KspAI GTTAAC 1 cut(s) 196
Kzo9I GATC 6 cut(s) 99, 592, 600, 737, 885, 903
LguI GCTCTTC 1 cut(s) 625
LmnI GCTCC 4 cut(s) 79, 115, 338, 773
Lsp1109I GCAGC 5 cut(s) 109, 378, 446, 475, 827
LweI GCATC 3 cut(s) 292, 505, 578
MaeI CTAG 2 cut(s) 444, 455
MaeII ACGT 2 cut(s) 560, 762
MaeIII GTNAC 5 cut(s) 289, 361, 439, 497, 826
MalI GATC 6 cut(s) 101, 594, 602, 739, 887, 905
MboI GATC 6 cut(s) 99, 592, 600, 737, 885, 903
MboII GAAGA 3 cut(s) 172, 479, 642
MfeI CAATTG 1 cut(s) 141
MflI RGATCY 1 cut(s) 737
MluCI AATT 6 cut(s) 38, 141, 189, 215, 237, 765
MnlI CCTC 6 cut(s) 19, 591, 814, 856, 859, 888
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 61
MseI TTAA 4 cut(s) 18, 168, 195, 297
MslI CAYNNNNRTG 1 cut(s) 933
MspA1I CMGCKG 3 cut(s) 122, 391, 818
MspI CCGG 3 cut(s) 77, 398, 959
MspR9I CCNGG 1 cut(s) 996
MunI CAATTG 1 cut(s) 141
Mva1269I GAATGC 2 cut(s) 536, 796
MvaI CCWGG 1 cut(s) 996
MwoI GCNNNNNNNGC 5 cut(s) 311, 320, 731, 740, 815
NdeII GATC 6 cut(s) 99, 592, 600, 737, 885, 903
NlaIII CATG 2 cut(s) 628, 886
NlaIV GGNNCC 2 cut(s) 75, 340
NmeAIII GCCGAG 1 cut(s) 886
NmuCI GTSAC 3 cut(s) 289, 361, 826
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 788
PaqCI CACCTGC 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 625
PcsI WCGNNNNNNNCGW 1 cut(s) 785
PctI GAATGC 2 cut(s) 536, 796
PdmI GAANNNNTTC 1 cut(s) 61
PfeI GAWTC 2 cut(s) 62, 325
PkrI GCNGC 6 cut(s) 124, 393, 396, 436, 490, 817
Ppu21I YACGTR 1 cut(s) 763
Psp6I CCWGG 1 cut(s) 994
PspGI CCWGG 1 cut(s) 994
PspN4I GGNNCC 2 cut(s) 75, 340
PspPI GGNCC 2 cut(s) 858, 992
PstNI CAGNNNCTG 2 cut(s) 740, 995
PsuI RGATCY 1 cut(s) 737
PvuII CAGCTG 3 cut(s) 122, 391, 818
RseI CAYNNNNRTG 1 cut(s) 933
SapI GCTCTTC 1 cut(s) 625
SaqAI TTAA 4 cut(s) 18, 168, 195, 297
SatI GCNGC 6 cut(s) 123, 392, 395, 435, 489, 816
Sau3AI GATC 6 cut(s) 99, 592, 600, 737, 885, 903
Sau96I GGNCC 2 cut(s) 858, 992
ScrFI CCNGG 1 cut(s) 996
SfaNI GCATC 3 cut(s) 292, 505, 578
SfuI TTCGAA 1 cut(s) 788
SmiMI CAYNNNNRTG 1 cut(s) 933
SnaBI TACGTA 1 cut(s) 763
SpeI ACTAGT 1 cut(s) 443
Sse9I AATT 6 cut(s) 38, 141, 189, 215, 237, 765
SsiI CCGC 2 cut(s) 80, 395
SspMI CTAG 2 cut(s) 444, 455
StyD4I CCNGG 1 cut(s) 994
StyI CCWWGG 3 cut(s) 492, 564, 840
TaaI ACNGT 3 cut(s) 367, 580, 672
TaiI ACGT 2 cut(s) 563, 765
TaqI TCGA 3 cut(s) 55, 540, 788
TaqII GACCGA 1 cut(s) 593
TasI AATT 6 cut(s) 38, 141, 189, 215, 237, 765
TauI GCSGC 1 cut(s) 397
TfiI GAWTC 2 cut(s) 62, 325
Tru1I TTAA 4 cut(s) 18, 168, 195, 297
Tru9I TTAA 4 cut(s) 18, 168, 195, 297
TscAI CASTG 2 cut(s) 370, 736
TseFI GTSAC 3 cut(s) 289, 361, 826
TseI GCWGC 5 cut(s) 122, 391, 434, 488, 815
Tsp45I GTSAC 3 cut(s) 289, 361, 826
TspDTI ATGAA 4 cut(s) 213, 660, 681, 951
TspRI CASTG 2 cut(s) 370, 736
XagI CCTNNNNNAGG 1 cut(s) 524
XapI RAATTY 1 cut(s) 215
XbaI TCTAGA 1 cut(s) 454
XmnI GAANNNNTTC 1 cut(s) 61
XspI CTAG 2 cut(s) 444, 455
ZraI GACGTC 1 cut(s) 561
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.