Rw4G033910

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0010838
Physical Location & Seq
Forward (+)
61064027 .. 61065881
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G033910.1

Sequence Viewer

Length: 942 bp
ATGTCGGCTCCAGTGGACAATGTAAATCAGGGGATCGGAGAAGCTCCCCAGTCAGCTGCCACACCCAACAGCACAATTGATGTTTCAGATGTGAAGACGATTAAAGTTGGCAACATTTCACGAATTGTTAACGACAGAGATATCAGAGAATTCTTTTCATTTTCTGGAGAAATTAGATATGTTGAAATGCAAAGAGAAACCGAAAACACACAACTTTCTTATGTCACCTTTAATGATGCACAAGGTGCAGATACAGCGATTCTTCTATCGGGAGCCACCATAGGTAATCTGCCTGTCACTATTGCACCTGCTAAGGAATACCAGCTGCCACCGGAAGCTCTCATCCCATCAAGCTCGTTGAAAAAGCCAGCAGTAACTAGTTCTGCTCTAGAGAAGGCAGAAGATGTGGTCAGCACTATGGCTGCCAAGGGTTACATCTTGGGAAAGGATGCCCTTAGCAAGGCAAAAGCATTCGACGAGCAACATAACTTGACGTCCAAGGCATCAGCCACGGTTGTTACCATTGATCAGAGGATCGGTCTGATGGAGAAAATAAGCATGGGAAGAGCTGTTGTCAATGAAAAGGTGAAACAGATGGATGAACGGTTCTTGGTCTCCGAAAAGACCAAATCTGTCTTTGCTGTTGCTGAGCAGACGGCAAGCAGTGCAGGATCTGCTATAATGAGCAACCCTTACGTAATTAGTGGAGCTTCGTGGGTTTCGAATGCACTGAGTGTATTTGCAAAGGCAGCTGAGGATGTGACCACGAAAACCAAGGAGAAGGTTGTTAGGGCTGAGGAAGAGAAACAGGAGACCATGATCAGGCAGAGGACAGCGATCATCAATGACTTTGCACAGAACCATCTTGATGAACCGTCTGGAAATGAGCTTCCGGTAGTTCAAGCAAAATCTGCTGATGACACAGGGCCTGGACTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

313

Amino Acids

33.56

Weight (kDa)

5.06

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 35 - 98 7.7e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010838)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67950 AT1G67950 AT1G67950 AT1G67950
fragaria_vesca FvH4_4g33260
malus_domestica MD13G1017900.v1.1 MD16G1015900.v1.1
prunus_persica Prupe.1G335700_v2.0.a1
pyrus_communis pycom13g01530 pycom16g01480
rosa_chinensis RchiOBHm_Chr4g0442411
rosa_laevigata RLG00000006012
rosa_multiflora Rmu_ssc0000204.1_g000062
rosa_roxburghii Rroxscaffold_5G00383250
rosa_rugosa Rorug04G0340900
rosa_samantha Rh4AG392600 Rh4BG406200 Rh4CG421400 Rh4DG399400
rosa_wichuraiana Rw4G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 316
AatII GACGTC 1 cut(s) 497
Acc36I ACCTGC 1 cut(s) 316
AclWI GGATC 3 cut(s) 41, 542, 679
AcsI RAATTY 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 494
AdeI CACNNNGTG 2 cut(s) 245, 734
AfiI CCNNNNNNNGG 2 cut(s) 460, 822
AgsI TTSAA 3 cut(s) 185, 361, 902
AhlI ACTAGT 1 cut(s) 377
AjnI CCWGG 1 cut(s) 928
AloI GAACNNNNNNTCC 2 cut(s) 590, 622
AluBI AGCT 9 cut(s) 44, 56, 325, 338, 354, 569, 710, 752, 889
AluI AGCT 9 cut(s) 44, 56, 325, 338, 354, 569, 710, 752, 889
Alw26I GTCTC 2 cut(s) 619, 806
AlwI GGATC 3 cut(s) 41, 542, 679
AlwNI CAGNNNCTG 2 cut(s) 674, 929
AoxI GGCC 1 cut(s) 926
ApeKI GCWGC 4 cut(s) 56, 325, 422, 749
ApoI RAATTY 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 926
AsuHPI GGTGA 2 cut(s) 217, 598
AsuII TTCGAA 1 cut(s) 722
BbsI GAAGAC 1 cut(s) 101
BbvCI CCTCAGC 2 cut(s) 753, 795
BbvI GCAGC 4 cut(s) 43, 312, 409, 761
BccI CCATC 4 cut(s) 355, 538, 589, 870
BceAI ACGGC 1 cut(s) 672
BciT130I CCWGG 1 cut(s) 930
BclI TGATCA 2 cut(s) 526, 819
BcoDI GTCTC 2 cut(s) 619, 806
BcuI ACTAGT 1 cut(s) 377
BfaI CTAG 2 cut(s) 378, 389
BfuAI ACCTGC 1 cut(s) 316
BisI GCNGC 4 cut(s) 57, 326, 423, 750
BlpI GCTNAGC 1 cut(s) 648
BlsI GCNGC 4 cut(s) 58, 327, 424, 751
Bme1390I CCNGG 1 cut(s) 930
BmgT120I GGNCC 1 cut(s) 926
BmiI GGNNCC 2 cut(s) 9, 274
BmrFI CCNGG 1 cut(s) 930
BmrI ACTGGG 1 cut(s) 43
BmsI GCATC 3 cut(s) 226, 439, 512
BmuI ACTGGG 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 186
Bpu10I CCTNAGC 4 cut(s) 312, 455, 753, 795
Bpu1102I GCTNAGC 1 cut(s) 648
Bpu14I TTCGAA 1 cut(s) 722
BsaAI YACGTR 1 cut(s) 697
BsaHI GRCGYC 1 cut(s) 494
BsaI GGTCTC 2 cut(s) 619, 806
BsaJI CCNNGG 4 cut(s) 426, 498, 510, 774
BsaWI WCCGGW 2 cut(s) 331, 892
Bsc4I CCNNNNNNNGG 2 cut(s) 460, 822
Bse1I ACTGG 2 cut(s) 11, 49
BseBI CCWGG 1 cut(s) 930
BseDI CCNNGG 4 cut(s) 426, 498, 510, 774
BseGI GGATG 4 cut(s) 342, 454, 604, 763
BseLI CCNNNNNNNGG 2 cut(s) 460, 822
BseMII CTCAG 4 cut(s) 639, 722, 744, 786
BseNI ACTGG 2 cut(s) 11, 49
BseXI GCAGC 4 cut(s) 43, 312, 409, 761
BsgI GTGCAG 2 cut(s) 267, 687
BshFI GGCC 1 cut(s) 928
BsiSI CCGG 2 cut(s) 332, 893
BslI CCNNNNNNNGG 2 cut(s) 460, 822
BsmAI GTCTC 2 cut(s) 619, 806
BsmI GAATGC 2 cut(s) 470, 730
BsnI GGCC 1 cut(s) 928
Bso31I GGTCTC 2 cut(s) 619, 806
Bsp119I TTCGAA 1 cut(s) 722
Bsp143I GATC 6 cut(s) 33, 526, 534, 671, 819, 837
Bsp1720I GCTNAGC 1 cut(s) 648
BspANI GGCC 1 cut(s) 928
BspCNI CTCAG 4 cut(s) 640, 723, 745, 787
BspLI GGNNCC 2 cut(s) 9, 274
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 3 cut(s) 41, 542, 679
BspQI GCTCTTC 1 cut(s) 559
BspT104I TTCGAA 1 cut(s) 722
BspTNI GGTCTC 2 cut(s) 619, 806
BsrI ACTGG 2 cut(s) 11, 49
BssECI CCNNGG 4 cut(s) 426, 498, 510, 774
BssMI GATC 6 cut(s) 33, 526, 534, 671, 819, 837
BssNI GRCGYC 1 cut(s) 494
BssT1I CCWWGG 3 cut(s) 426, 498, 774
Bst2UI CCWGG 1 cut(s) 930
Bst4CI ACNGT 3 cut(s) 514, 606, 876
Bst6I CTCTTC 2 cut(s) 559, 795
BstACI GRCGYC 1 cut(s) 494
BstAPI GCANNNNNTGC 4 cut(s) 245, 665, 674, 911
BstBAI YACGTR 1 cut(s) 697
BstBI TTCGAA 1 cut(s) 722
BstC8I GCNNGC 2 cut(s) 369, 661
BstDEI CTNAG 6 cut(s) 312, 455, 648, 731, 753, 795
BstDSI CCRYGG 1 cut(s) 510
BstENI CCTNNNNNAGG 1 cut(s) 458
BstF5I GGATG 4 cut(s) 342, 454, 604, 763
BstKTI GATC 6 cut(s) 36, 529, 537, 674, 822, 840
BstMAI GTCTC 2 cut(s) 619, 806
BstMBI GATC 6 cut(s) 33, 526, 534, 671, 819, 837
BstMWI GCNNNNNNNGC 6 cut(s) 245, 254, 665, 674, 749, 911
BstNI CCWGG 1 cut(s) 930
BstSCI CCNGG 1 cut(s) 928
BstSNI TACGTA 1 cut(s) 697
BstV1I GCAGC 4 cut(s) 43, 312, 409, 761
BstV2I GAAGAC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 671
BstYI RGATCY 1 cut(s) 671
BsuRI GGCC 1 cut(s) 928
BtgI CCRYGG 1 cut(s) 510
BtsCI GGATG 4 cut(s) 342, 454, 604, 763
BtsI GCAGTG 1 cut(s) 670
BtsIMutI CAGTG 3 cut(s) 18, 670, 728
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 2 cut(s) 369, 661
CaiI CAGNNNCTG 2 cut(s) 674, 929
Cfr13I GGNCC 1 cut(s) 926
CviAII CATG 2 cut(s) 559, 817
DdeI CTNAG 6 cut(s) 312, 455, 648, 731, 753, 795
DpnI GATC 6 cut(s) 35, 528, 536, 673, 821, 839
DpnII GATC 6 cut(s) 33, 526, 534, 671, 819, 837
DraIII CACNNNGTG 2 cut(s) 245, 734
Eam1104I CTCTTC 2 cut(s) 559, 795
EarI CTCTTC 2 cut(s) 559, 795
Eco105I TACGTA 1 cut(s) 697
Eco130I CCWWGG 3 cut(s) 426, 498, 774
Eco31I GGTCTC 2 cut(s) 619, 806
Eco32I GATATC 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 458
EcoO109I RGGNCCY 1 cut(s) 926
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 928
EcoRV GATATC 1 cut(s) 142
EcoT14I CCWWGG 3 cut(s) 426, 498, 774
ErhI CCWWGG 3 cut(s) 426, 498, 774
FaeI CATG 2 cut(s) 562, 820
FaiI YATR 9 cut(s) 180, 222, 281, 419, 486, 560, 680, 818, 940
FatI CATG 2 cut(s) 558, 816
FbaI TGATCA 2 cut(s) 526, 819
Fnu4HI GCNGC 4 cut(s) 57, 326, 423, 750
FokI GGATG 4 cut(s) 329, 461, 611, 770
Fsp4HI GCNGC 4 cut(s) 57, 326, 423, 750
FspBI CTAG 2 cut(s) 378, 389
GluI GCNGC 4 cut(s) 57, 326, 423, 750
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 928
HapII CCGG 2 cut(s) 332, 893
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 2 cut(s) 562, 820
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 1 cut(s) 259
HpaI GTTAAC 1 cut(s) 130
HpaII CCGG 2 cut(s) 332, 893
HphI GGTGA 2 cut(s) 217, 598
Hpy166II GTNNAC 2 cut(s) 16, 130
Hpy188I TCNGA 6 cut(s) 38, 88, 146, 531, 543, 619
Hpy188III TCNNGA 6 cut(s) 120, 165, 270, 389, 866, 879
Hpy8I GTNNAC 2 cut(s) 16, 130
Hpy99I CGWCG 1 cut(s) 479
HpyAV CCTTC 2 cut(s) 388, 775
HpyCH4III ACNGT 3 cut(s) 514, 606, 876
HpyCH4IV ACGT 2 cut(s) 494, 696
HpyCH4V TGCA 8 cut(s) 190, 239, 248, 305, 668, 728, 743, 854
HpyF10VI GCNNNNNNNGC 6 cut(s) 245, 254, 665, 674, 749, 911
HpyF3I CTNAG 6 cut(s) 312, 455, 648, 731, 753, 795
HpySE526I ACGT 2 cut(s) 494, 696
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 2 cut(s) 562, 820
Ksp22I TGATCA 2 cut(s) 526, 819
KspAI GTTAAC 1 cut(s) 130
Kzo9I GATC 6 cut(s) 33, 526, 534, 671, 819, 837
LguI GCTCTTC 1 cut(s) 559
LmnI GCTCC 4 cut(s) 13, 49, 272, 707
Lsp1109I GCAGC 4 cut(s) 43, 312, 409, 761
LweI GCATC 3 cut(s) 226, 439, 512
MaeI CTAG 2 cut(s) 378, 389
MaeII ACGT 2 cut(s) 494, 696
MaeIII GTNAC 6 cut(s) 223, 295, 373, 431, 517, 760
MalI GATC 6 cut(s) 35, 528, 536, 673, 821, 839
MboI GATC 6 cut(s) 33, 526, 534, 671, 819, 837
MboII GAAGA 5 cut(s) 106, 254, 413, 576, 812
MfeI CAATTG 1 cut(s) 75
MflI RGATCY 1 cut(s) 671
MluCI AATT 5 cut(s) 75, 123, 149, 171, 699
MnlI CCTC 4 cut(s) 525, 748, 790, 822
MseI TTAA 3 cut(s) 102, 129, 231
MslI CAYNNNNRTG 1 cut(s) 867
MspA1I CMGCKG 3 cut(s) 56, 325, 752
MspI CCGG 2 cut(s) 332, 893
MspR9I CCNGG 1 cut(s) 930
MunI CAATTG 1 cut(s) 75
Mva1269I GAATGC 2 cut(s) 470, 730
MvaI CCWGG 1 cut(s) 930
MwoI GCNNNNNNNGC 6 cut(s) 245, 254, 665, 674, 749, 911
NdeII GATC 6 cut(s) 33, 526, 534, 671, 819, 837
NlaIII CATG 2 cut(s) 562, 820
NlaIV GGNNCC 2 cut(s) 9, 274
NmuCI GTSAC 3 cut(s) 223, 295, 760
NspV TTCGAA 1 cut(s) 722
PaqCI CACCTGC 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 559
PcsI WCGNNNNNNNCGW 1 cut(s) 719
PctI GAATGC 2 cut(s) 470, 730
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 4 cut(s) 58, 327, 424, 751
Ppu21I YACGTR 1 cut(s) 697
Psp6I CCWGG 1 cut(s) 928
PspGI CCWGG 1 cut(s) 928
PspN4I GGNNCC 2 cut(s) 9, 274
PspPI GGNCC 1 cut(s) 926
PstNI CAGNNNCTG 2 cut(s) 674, 929
PsuI RGATCY 1 cut(s) 671
PvuII CAGCTG 3 cut(s) 56, 325, 752
RseI CAYNNNNRTG 1 cut(s) 867
SapI GCTCTTC 1 cut(s) 559
SaqAI TTAA 3 cut(s) 102, 129, 231
SatI GCNGC 4 cut(s) 57, 326, 423, 750
Sau3AI GATC 6 cut(s) 33, 526, 534, 671, 819, 837
Sau96I GGNCC 1 cut(s) 926
ScrFI CCNGG 1 cut(s) 930
SfaNI GCATC 3 cut(s) 226, 439, 512
SfuI TTCGAA 1 cut(s) 722
SmiMI CAYNNNNRTG 1 cut(s) 867
SnaBI TACGTA 1 cut(s) 697
SpeI ACTAGT 1 cut(s) 377
Sse9I AATT 5 cut(s) 75, 123, 149, 171, 699
SspMI CTAG 2 cut(s) 378, 389
StyD4I CCNGG 1 cut(s) 928
StyI CCWWGG 3 cut(s) 426, 498, 774
TaaI ACNGT 3 cut(s) 514, 606, 876
TaiI ACGT 2 cut(s) 497, 699
TaqI TCGA 2 cut(s) 474, 722
TaqII GACCGA 1 cut(s) 527
TasI AATT 5 cut(s) 75, 123, 149, 171, 699
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 3 cut(s) 102, 129, 231
Tru9I TTAA 3 cut(s) 102, 129, 231
TscAI CASTG 3 cut(s) 18, 670, 735
TseFI GTSAC 3 cut(s) 223, 295, 760
TseI GCWGC 4 cut(s) 56, 325, 422, 749
Tsp45I GTSAC 3 cut(s) 223, 295, 760
TspDTI ATGAA 4 cut(s) 147, 594, 615, 885
TspRI CASTG 3 cut(s) 18, 670, 735
XagI CCTNNNNNAGG 1 cut(s) 458
XapI RAATTY 1 cut(s) 149
XbaI TCTAGA 1 cut(s) 388
XspI CTAG 2 cut(s) 378, 389
ZraI GACGTC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.