Rmu_ssc0000204.1_g000062

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000204.1
OG0010838
Physical Location & Seq
Reverse (-)
276506 .. 281446
4941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000204.1_g000062.1.cds

Sequence Viewer

Length: 1524 bp
atggtaggctgtgaactttctgaaaagacaaagaaaacagattggcttaatacccttttgcacagcaagttctttggttcctgtggtgttcatcaagatcttcgcaaaaacgagaagaatgtgttttgcattgactgtagtctccggctctgtaggcactgtatgaaagctcattgtctccatacaaagcttcaaatctgcaaatatgtatatcatgatgtacttcgccttcaagaaattcagaagcatgttgattgtgctagaattcagacatataaaatcaatggtgacaaagctgtgcatctaaatcctcgtccaatgtccaaggatgccaaaccatcaacaaaagcaaagtttggttctgcttgtgatgtttgtggtagatatctacaagacatgccaaatcgcttctgctccattgcttgtaaggcctctgtagaatcagtgaagcctaaacaccaaagtcatgaattcatcgcctttggaattccagaatgtggtggctattcacctcaagggaataacaattcggaaacatatatgagtgaaatggaatcctctatctcgtctgaggagatgaatgcttgggctccagtggacaatgtaaatcaggggatcggagaagctccccagtcagctgccacacccaacagcacaattgatgtttcagatgtgaagacgattaaagttggcaacatttcacgaattgttaacgacagagatatcagagaattcttttcattttctggagaaattagatatgttgaaatgcaaagagaaaccgaaaacacccaactttcttatgtcacctttaatgatgcacaaggtgcagatacagcgattcttctatcgggagccaccataggtaatctgcctgtcactattgcacctgctaaggaataccagctgccaccggaagctctcatcccatcaagctcgttgaaaaatgcagcagtaactagttctgctctagagaaggcagaagatgtggtcagcactatggctgccaagggttacatcttgggaaaggatgcccttagcaaggcaaaagcattcgacgagcaacataacttgacgtccaaggcatcggccacggttgttaccattgatcagaggatcggtctgatggagaaaataagcatgggaagagctgttgtcaatgaaaaggtgaaacagatggatgaacggttcttggtctccgaaaagaccaaatctgtctttgctgttgctgagcagacggcaagcagtgcaggatctgctataatgagcaacccttacgtaattagtggagcttcgtgggtttcgaatgcactgagtgtatttgcaaaggcagctgaggatgtgaccacgaaaaccaaggagaaggttgttagggctgaggaggagaaacaggagaccatgatcaggcagaggacagcgatcatcaatgactttgcacagaaccatcttgatgaaccgtctggaaatgagcttccggtagttcaaacaaaatctgctgatgacacagggcctggacttgtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

507

Amino Acids

55.6

Weight (kDa)

6.48

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010838)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67950 AT1G67950 AT1G67950 AT1G67950
fragaria_vesca FvH4_4g33260
malus_domestica MD13G1017900.v1.1 MD16G1015900.v1.1
prunus_persica Prupe.1G335700_v2.0.a1
pyrus_communis pycom13g01530 pycom16g01480
rosa_chinensis RchiOBHm_Chr4g0442411
rosa_laevigata RLG00000006012
rosa_multiflora Rmu_ssc0000204.1_g000062
rosa_roxburghii Rroxscaffold_5G00383250
rosa_rugosa Rorug04G0340900
rosa_samantha Rh4AG392600 Rh4BG406200 Rh4CG421400 Rh4DG399400
rosa_wichuraiana Rw4G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 898
AatII GACGTC 1 cut(s) 1079
Acc36I ACCTGC 1 cut(s) 898
AccB7I CCANNNNNTGG 1 cut(s) 497
AclWI GGATC 3 cut(s) 623, 1124, 1261
AcoI YGGCCR 1 cut(s) 1089
AcsI RAATTY 5 cut(s) 237, 264, 470, 486, 731
AcyI GRCGYC 1 cut(s) 1076
AdeI CACNNNGTG 2 cut(s) 827, 1316
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 3 cut(s) 497, 1042, 1404
AgsI TTSAA 5 cut(s) 194, 233, 767, 943, 1484
AhlI ACTAGT 1 cut(s) 959
AjnI CCWGG 1 cut(s) 1510
AloI GAACNNNNNNTCC 2 cut(s) 1172, 1204
Alw26I GTCTC 4 cut(s) 146, 182, 1201, 1388
AlwI GGATC 3 cut(s) 623, 1124, 1261
AlwNI CAGNNNCTG 2 cut(s) 1256, 1511
AoxI GGCC 3 cut(s) 429, 1089, 1508
ApeKI GCWGC 5 cut(s) 638, 907, 950, 1004, 1331
ApoI RAATTY 5 cut(s) 237, 264, 470, 486, 731
AspS9I GGNCC 1 cut(s) 1508
AsuHPI GGTGA 4 cut(s) 299, 501, 799, 1180
AsuII TTCGAA 1 cut(s) 1304
BanII GRGCYC 1 cut(s) 592
BarI GAAGNNNNNNTAC 2 cut(s) 213, 245
BbsI GAAGAC 1 cut(s) 683
BbvCI CCTCAGC 2 cut(s) 1335, 1377
BbvI GCAGC 5 cut(s) 625, 894, 962, 991, 1343
BccI CCATC 5 cut(s) 346, 937, 1120, 1171, 1452
BceAI ACGGC 1 cut(s) 1254
BciT130I CCWGG 1 cut(s) 1512
BclI TGATCA 2 cut(s) 1108, 1401
BcoDI GTCTC 4 cut(s) 146, 182, 1201, 1388
BcuI ACTAGT 1 cut(s) 959
BfaI CTAG 3 cut(s) 261, 960, 971
BfmI CTRYAG 3 cut(s) 136, 151, 435
BfuAI ACCTGC 1 cut(s) 898
BglII AGATCT 1 cut(s) 97
BisI GCNGC 5 cut(s) 639, 908, 951, 1005, 1332
BlpI GCTNAGC 1 cut(s) 1230
BlsI GCNGC 5 cut(s) 640, 909, 952, 1006, 1333
Bme1390I CCNGG 1 cut(s) 1512
BmgT120I GGNCC 1 cut(s) 1508
BmiI GGNNCC 3 cut(s) 79, 591, 856
BmrFI CCNGG 1 cut(s) 1512
BmrI ACTGGG 1 cut(s) 625
BmsI GCATC 5 cut(s) 310, 319, 808, 1021, 1094
BmuI ACTGGG 1 cut(s) 625
BoxI GACNNNNGTC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 683
BpmI CTGGAG 2 cut(s) 576, 768
Bpu10I CCTNAGC 4 cut(s) 894, 1037, 1335, 1377
Bpu1102I GCTNAGC 1 cut(s) 1230
Bpu14I TTCGAA 1 cut(s) 1304
BpuEI CTTGAG 1 cut(s) 498
BsaAI YACGTR 1 cut(s) 1279
BsaHI GRCGYC 1 cut(s) 1076
BsaI GGTCTC 2 cut(s) 1201, 1388
BsaJI CCNNGG 5 cut(s) 324, 1008, 1080, 1092, 1356
BsaWI WCCGGW 2 cut(s) 913, 1474
Bsc4I CCNNNNNNNGG 3 cut(s) 497, 1042, 1404
Bse1I ACTGG 2 cut(s) 593, 631
Bse3DI GCAATG 1 cut(s) 417
BseBI CCWGG 1 cut(s) 1512
BseDI CCNNGG 5 cut(s) 324, 1008, 1080, 1092, 1356
BseGI GGATG 5 cut(s) 334, 924, 1036, 1186, 1345
BseLI CCNNNNNNNGG 3 cut(s) 497, 1042, 1404
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 5 cut(s) 561, 1221, 1304, 1326, 1368
BseNI ACTGG 2 cut(s) 593, 631
BseRI GAGGAG 3 cut(s) 587, 1394, 1397
BseXI GCAGC 5 cut(s) 625, 894, 962, 991, 1343
BsgI GTGCAG 2 cut(s) 849, 1269
BshFI GGCC 3 cut(s) 431, 1091, 1510
BsiSI CCGG 3 cut(s) 145, 914, 1475
BslI CCNNNNNNNGG 3 cut(s) 497, 1042, 1404
BsmAI GTCTC 4 cut(s) 146, 182, 1201, 1388
BsmI GAATGC 3 cut(s) 586, 1052, 1312
BsnI GGCC 3 cut(s) 431, 1091, 1510
Bso31I GGTCTC 2 cut(s) 1201, 1388
Bsp119I TTCGAA 1 cut(s) 1304
Bsp1286I GDGCHC 1 cut(s) 592
Bsp143I GATC 7 cut(s) 97, 615, 1108, 1116, 1253, 1401, 1419
Bsp1720I GCTNAGC 1 cut(s) 1230
BspANI GGCC 3 cut(s) 431, 1091, 1510
BspCNI CTCAG 5 cut(s) 562, 1222, 1305, 1327, 1369
BspHI TCATGA 2 cut(s) 214, 466
BspLI GGNNCC 3 cut(s) 79, 591, 856
BspMI ACCTGC 1 cut(s) 898
BspPI GGATC 3 cut(s) 623, 1124, 1261
BspQI GCTCTTC 1 cut(s) 1141
BspT104I TTCGAA 1 cut(s) 1304
BspTNI GGTCTC 2 cut(s) 1201, 1388
BsrDI GCAATG 1 cut(s) 417
BsrI ACTGG 2 cut(s) 593, 631
BssECI CCNNGG 5 cut(s) 324, 1008, 1080, 1092, 1356
BssMI GATC 7 cut(s) 97, 615, 1108, 1116, 1253, 1401, 1419
BssNI GRCGYC 1 cut(s) 1076
BssT1I CCWWGG 4 cut(s) 324, 1008, 1080, 1356
Bst2UI CCWGG 1 cut(s) 1512
Bst4CI ACNGT 5 cut(s) 137, 161, 1096, 1188, 1458
Bst6I CTCTTC 1 cut(s) 1141
BstACI GRCGYC 1 cut(s) 1076
BstAPI GCANNNNNTGC 3 cut(s) 827, 1247, 1256
BstBAI YACGTR 1 cut(s) 1279
BstBI TTCGAA 1 cut(s) 1304
BstC8I GCNNGC 1 cut(s) 1243
BstDEI CTNAG 7 cut(s) 570, 894, 1037, 1230, 1313, 1335, 1377
BstDSI CCRYGG 1 cut(s) 1092
BstENI CCTNNNNNAGG 1 cut(s) 1040
BstF5I GGATG 5 cut(s) 334, 924, 1036, 1186, 1345
BstKTI GATC 7 cut(s) 100, 618, 1111, 1119, 1256, 1404, 1422
BstMAI GTCTC 4 cut(s) 146, 182, 1201, 1388
BstMBI GATC 7 cut(s) 97, 615, 1108, 1116, 1253, 1401, 1419
BstMWI GCNNNNNNNGC 7 cut(s) 154, 428, 827, 836, 1247, 1256, 1331
BstNI CCWGG 1 cut(s) 1512
BstNSI RCATGY 2 cut(s) 251, 400
BstPAI GACNNNNGTC 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 1510
BstSFI CTRYAG 3 cut(s) 136, 151, 435
BstSNI TACGTA 1 cut(s) 1279
BstV1I GCAGC 5 cut(s) 625, 894, 962, 991, 1343
BstV2I GAAGAC 1 cut(s) 683
BstX2I RGATCY 2 cut(s) 97, 1253
BstYI RGATCY 2 cut(s) 97, 1253
BsuRI GGCC 3 cut(s) 431, 1091, 1510
BtgI CCRYGG 1 cut(s) 1092
BtgZI GCGATG 1 cut(s) 460
BtsCI GGATG 5 cut(s) 334, 924, 1036, 1186, 1345
BtsI GCAGTG 1 cut(s) 1252
BtsIMutI CAGTG 5 cut(s) 157, 450, 600, 1252, 1310
BveI ACCTGC 1 cut(s) 898
Cac8I GCNNGC 1 cut(s) 1243
CaiI CAGNNNCTG 2 cut(s) 1256, 1511
CciI TCATGA 2 cut(s) 214, 466
Cfr13I GGNCC 1 cut(s) 1508
Csp6I GTAC 1 cut(s) 221
CviAII CATG 6 cut(s) 215, 248, 397, 467, 1141, 1399
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 7 cut(s) 570, 894, 1037, 1230, 1313, 1335, 1377
DpnI GATC 7 cut(s) 99, 617, 1110, 1118, 1255, 1403, 1421
DpnII GATC 7 cut(s) 97, 615, 1108, 1116, 1253, 1401, 1419
DraIII CACNNNGTG 2 cut(s) 827, 1316
EaeI YGGCCR 1 cut(s) 1089
Eam1104I CTCTTC 1 cut(s) 1141
EarI CTCTTC 1 cut(s) 1141
Eco105I TACGTA 1 cut(s) 1279
Eco130I CCWWGG 4 cut(s) 324, 1008, 1080, 1356
Eco147I AGGCCT 1 cut(s) 431
Eco24I GRGCYC 1 cut(s) 592
Eco31I GGTCTC 2 cut(s) 1201, 1388
Eco32I GATATC 2 cut(s) 386, 724
EcoNI CCTNNNNNAGG 1 cut(s) 1040
EcoO109I RGGNCCY 1 cut(s) 1508
EcoRI GAATTC 4 cut(s) 264, 470, 486, 731
EcoRII CCWGG 1 cut(s) 1510
EcoRV GATATC 2 cut(s) 386, 724
EcoT14I CCWWGG 4 cut(s) 324, 1008, 1080, 1356
EcoT38I GRGCYC 1 cut(s) 592
ErhI CCWWGG 4 cut(s) 324, 1008, 1080, 1356
FaeI CATG 6 cut(s) 218, 251, 400, 470, 1144, 1402
FatI CATG 6 cut(s) 214, 247, 396, 466, 1140, 1398
FbaI TGATCA 2 cut(s) 1108, 1401
Fnu4HI GCNGC 5 cut(s) 639, 908, 951, 1005, 1332
FokI GGATG 5 cut(s) 341, 911, 1043, 1193, 1352
FriOI GRGCYC 1 cut(s) 592
Fsp4HI GCNGC 5 cut(s) 639, 908, 951, 1005, 1332
FspBI CTAG 3 cut(s) 261, 960, 971
GluI GCNGC 5 cut(s) 639, 908, 951, 1005, 1332
GsuI CTGGAG 2 cut(s) 576, 768
HaeIII GGCC 3 cut(s) 431, 1091, 1510
HapII CCGG 3 cut(s) 145, 914, 1475
Hin1I GRCGYC 1 cut(s) 1076
Hin1II CATG 6 cut(s) 218, 251, 400, 470, 1144, 1402
HincII GTYRAC 1 cut(s) 712
HindII GTYRAC 1 cut(s) 712
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 3 cut(s) 440, 554, 841
HpaI GTTAAC 1 cut(s) 712
HpaII CCGG 3 cut(s) 145, 914, 1475
HphI GGTGA 4 cut(s) 299, 501, 799, 1180
Hpy166II GTNNAC 3 cut(s) 14, 598, 712
Hpy8I GTNNAC 3 cut(s) 14, 598, 712
Hpy99I CGWCG 1 cut(s) 1061
HpyAV CCTTC 3 cut(s) 239, 970, 1357
HpyCH4III ACNGT 5 cut(s) 137, 161, 1096, 1188, 1458
HpyCH4IV ACGT 2 cut(s) 1076, 1278
HpyF10VI GCNNNNNNNGC 7 cut(s) 154, 428, 827, 836, 1247, 1256, 1331
HpyF3I CTNAG 7 cut(s) 570, 894, 1037, 1230, 1313, 1335, 1377
HpySE526I ACGT 2 cut(s) 1076, 1278
Hsp92I GRCGYC 1 cut(s) 1076
Hsp92II CATG 6 cut(s) 218, 251, 400, 470, 1144, 1402
Ksp22I TGATCA 2 cut(s) 1108, 1401
KspAI GTTAAC 1 cut(s) 712
Kzo9I GATC 7 cut(s) 97, 615, 1108, 1116, 1253, 1401, 1419
LguI GCTCTTC 1 cut(s) 1141
LmnI GCTCC 5 cut(s) 419, 595, 631, 854, 1289
Lsp1109I GCAGC 5 cut(s) 625, 894, 962, 991, 1343
LweI GCATC 5 cut(s) 310, 319, 808, 1021, 1094
MaeI CTAG 3 cut(s) 261, 960, 971
MaeII ACGT 2 cut(s) 1076, 1278
MaeIII GTNAC 7 cut(s) 287, 805, 877, 955, 1013, 1099, 1342
MalI GATC 7 cut(s) 99, 617, 1110, 1118, 1255, 1403, 1421
MboI GATC 7 cut(s) 97, 615, 1108, 1116, 1253, 1401, 1419
MboII GAAGA 6 cut(s) 92, 127, 688, 836, 995, 1158
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 2 cut(s) 97, 1253
MhlI GDGCHC 1 cut(s) 592
MseI TTAA 4 cut(s) 48, 684, 711, 813
MslI CAYNNNNRTG 1 cut(s) 1449
MspA1I CMGCKG 3 cut(s) 638, 907, 1334
MspI CCGG 3 cut(s) 145, 914, 1475
MspR9I CCNGG 1 cut(s) 1512
MunI CAATTG 1 cut(s) 657
Mva1269I GAATGC 3 cut(s) 586, 1052, 1312
MvaI CCWGG 1 cut(s) 1512
MwoI GCNNNNNNNGC 7 cut(s) 154, 428, 827, 836, 1247, 1256, 1331
NdeII GATC 7 cut(s) 97, 615, 1108, 1116, 1253, 1401, 1419
NlaIII CATG 6 cut(s) 218, 251, 400, 470, 1144, 1402
NlaIV GGNNCC 3 cut(s) 79, 591, 856
NmuCI GTSAC 4 cut(s) 287, 805, 877, 1342
NspI RCATGY 2 cut(s) 251, 400
NspV TTCGAA 1 cut(s) 1304
PagI TCATGA 2 cut(s) 214, 466
PaqCI CACCTGC 1 cut(s) 898
PceI AGGCCT 1 cut(s) 431
PciSI GCTCTTC 1 cut(s) 1141
PcsI WCGNNNNNNNCGW 1 cut(s) 1301
PctI GAATGC 3 cut(s) 586, 1052, 1312
PfeI GAWTC 3 cut(s) 440, 554, 841
PflMI CCANNNNNTGG 1 cut(s) 497
PkrI GCNGC 5 cut(s) 640, 909, 952, 1006, 1333
Ppu21I YACGTR 1 cut(s) 1279
PshAI GACNNNNGTC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 1510
PspGI CCWGG 1 cut(s) 1510
PspN4I GGNNCC 3 cut(s) 79, 591, 856
PspPI GGNCC 1 cut(s) 1508
PstNI CAGNNNCTG 2 cut(s) 1256, 1511
PsuI RGATCY 2 cut(s) 97, 1253
PvuII CAGCTG 3 cut(s) 638, 907, 1334
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
RseI CAYNNNNRTG 1 cut(s) 1449
SapI GCTCTTC 1 cut(s) 1141
SaqAI TTAA 4 cut(s) 48, 684, 711, 813
SatI GCNGC 5 cut(s) 639, 908, 951, 1005, 1332
Sau3AI GATC 7 cut(s) 97, 615, 1108, 1116, 1253, 1401, 1419
Sau96I GGNCC 1 cut(s) 1508
ScrFI CCNGG 1 cut(s) 1512
SduI GDGCHC 1 cut(s) 592
SfaNI GCATC 5 cut(s) 310, 319, 808, 1021, 1094
SfcI CTRYAG 3 cut(s) 136, 151, 435
SfuI TTCGAA 1 cut(s) 1304
SmiMI CAYNNNNRTG 1 cut(s) 1449
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
SnaBI TACGTA 1 cut(s) 1279
SpeI ACTAGT 1 cut(s) 959
SseBI AGGCCT 1 cut(s) 431
SspMI CTAG 3 cut(s) 261, 960, 971
StuI AGGCCT 1 cut(s) 431
StyD4I CCNGG 1 cut(s) 1510
StyI CCWWGG 4 cut(s) 324, 1008, 1080, 1356
TaaI ACNGT 5 cut(s) 137, 161, 1096, 1188, 1458
TaiI ACGT 2 cut(s) 1079, 1281
TaqI TCGA 2 cut(s) 1056, 1304
TaqII GACCGA 1 cut(s) 1109
TatI WGTACW 1 cut(s) 220
TfiI GAWTC 3 cut(s) 440, 554, 841
Tru1I TTAA 4 cut(s) 48, 684, 711, 813
Tru9I TTAA 4 cut(s) 48, 684, 711, 813
TscAI CASTG 5 cut(s) 164, 450, 600, 1252, 1317
TseFI GTSAC 4 cut(s) 287, 805, 877, 1342
TseI GCWGC 5 cut(s) 638, 907, 950, 1004, 1331
Tsp45I GTSAC 4 cut(s) 287, 805, 877, 1342
TspDTI ATGAA 9 cut(s) 80, 179, 463, 483, 593, 729, 1176, 1197, 1467
TspRI CASTG 5 cut(s) 164, 450, 600, 1252, 1317
Van91I CCANNNNNTGG 1 cut(s) 497
XagI CCTNNNNNAGG 1 cut(s) 1040
XapI RAATTY 5 cut(s) 237, 264, 470, 486, 731
XbaI TCTAGA 1 cut(s) 970
XceI RCATGY 2 cut(s) 251, 400
XspI CTAG 3 cut(s) 261, 960, 971
ZraI GACGTC 1 cut(s) 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.