FvH4_4g33260

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0010838
Physical Location & Seq
Forward (+)
31537683 .. 31539796
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g33260.t1

Sequence Viewer

Length: 945 bp
ATGTCGGCTCCGTTGGACAATGTAAACCAGGGGATCGGAGAAGCTCCACAGTCAGCTGTCACACCGAACAGCACCACCATCAATGTTTCGGATGTAAAGACGATTAAAGTTGGCAACATTGCGAGAACTGTTTCCGCCAAAGAAATCAGAGATTTCTTTTCATTCTCTGGAAAAATCAAATACGTTGAAATGCAAAGTGAAACCGAACACACCCAGCTTTCTTATGTCACCTTTAACGATGCACAAGGTGCAGATACAGCGCTTCTCCTGACGGGAGCCACCATAGCTAATATGCCCGTCACTATTGCACCTGCTAAGGAGTACCAGCTGCCGCCGGAAGCTCTCATCCCATCAAGCCCGTTGAAAAGGCCAGCAGTAACTAGTTCTGCTGTAGAGAAGGCAGAAGATGTGGTCAGCACTATTGTTGCCAAGGGTTTCGTCTTGGGAAAGTATGCCATTAGCAAGGCAAAAGCATTCGACGAGCAGCATAACTTGTCGTCCAAGGCATCGGCCACAGTTGCTACCATTGATCAGAAGATCGGTCTGATGGAGAAGCTAAGCATGGGAAAAGATGTTGTCAATGAGAAGGTGAAACAGATGGATGAACGGTTCTTGGTCTCCGAAAAGACAAAAACTGTGTTTGCTGTTGCTGAGCAGAAGGCAAGCAGTGCAGGATCTGCTATCTTGAGCAACCCTTATGTATGGAGTGGAGCTTCGTGGGTTTCGACTGCACTGGGAGCATTTGCAAAGGCTACTGAGGATGTCACCACGAAAACCAAGGAGAAGGTTGTAAGGGCAGAGGAGGAGAAACAGCAGACCATGCTGAGGCAGAGGACATCGATCATCGATGACTATGCACAGAACCATCTTGATGAACCGTCTGGAAATGAGCCTCCAGTAGTTCAAACAAAATCTGCTGATGACACTAATACTGGACTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

315

Amino Acids

33.7

Weight (kDa)

5.6

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 36 - 99 4.7e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010838)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67950 AT1G67950 AT1G67950 AT1G67950
fragaria_vesca FvH4_4g33260
malus_domestica MD13G1017900.v1.1 MD16G1015900.v1.1
prunus_persica Prupe.1G335700_v2.0.a1
pyrus_communis pycom13g01530 pycom16g01480
rosa_chinensis RchiOBHm_Chr4g0442411
rosa_laevigata RLG00000006012
rosa_multiflora Rmu_ssc0000204.1_g000062
rosa_roxburghii Rroxscaffold_5G00383250
rosa_rugosa Rorug04G0340900
rosa_samantha Rh4AG392600 Rh4BG406200 Rh4CG421400 Rh4DG399400
rosa_wichuraiana Rw4G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 319
Acc36I ACCTGC 1 cut(s) 319
AciI CCGC 2 cut(s) 135, 332
AclWI GGATC 2 cut(s) 41, 682
AcoI YGGCCR 1 cut(s) 510
AdeI CACNNNGTG 1 cut(s) 248
AfaI GTAC 1 cut(s) 323
AfeI AGCGCT 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 825
AgsI TTSAA 3 cut(s) 188, 364, 905
AhlI ACTAGT 1 cut(s) 380
AjnI CCWGG 1 cut(s) 27
AloI GAACNNNNNNTCC 2 cut(s) 593, 625
AluBI AGCT 8 cut(s) 44, 56, 217, 287, 328, 341, 556, 713
AluI AGCT 8 cut(s) 44, 56, 217, 287, 328, 341, 556, 713
Alw26I GTCTC 1 cut(s) 622
AlwI GGATC 2 cut(s) 41, 682
AlwNI CAGNNNCTG 1 cut(s) 677
Aor51HI AGCGCT 1 cut(s) 261
AoxI GGCC 2 cut(s) 368, 510
ApeKI GCWGC 2 cut(s) 328, 484
Asp700I GAANNNNTTC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 262
AsuHPI GGTGA 3 cut(s) 220, 601, 757
BbvCI CCTCAGC 1 cut(s) 824
BbvI GCAGC 2 cut(s) 315, 496
BccI CCATC 5 cut(s) 86, 358, 541, 592, 873
BcgI CGANNNNNNTGC 2 cut(s) 836, 870
BciT130I CCWGG 1 cut(s) 29
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 622
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 390
BfoI RGCGCY 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 319
BisI GCNGC 3 cut(s) 329, 332, 485
BlpI GCTNAGC 2 cut(s) 557, 651
BlsI GCNGC 3 cut(s) 330, 333, 486
Bme1390I CCNGG 1 cut(s) 29
BmiI GGNNCC 2 cut(s) 9, 277
BmrFI CCNGG 1 cut(s) 29
BmrI ACTGGG 1 cut(s) 743
BmsI GCATC 2 cut(s) 229, 515
BmuI ACTGGG 1 cut(s) 743
BpmI CTGGAG 1 cut(s) 879
Bpu10I CCTNAGC 2 cut(s) 315, 824
Bpu1102I GCTNAGC 2 cut(s) 557, 651
BpuEI CTTGAG 1 cut(s) 706
Bsa29I ATCGAT 2 cut(s) 839, 846
BsaI GGTCTC 1 cut(s) 622
BsaJI CCNNGG 4 cut(s) 28, 429, 501, 777
Bsc4I CCNNNNNNNGG 1 cut(s) 825
Bse1I ACTGG 3 cut(s) 738, 896, 937
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 29
BseCI ATCGAT 2 cut(s) 839, 846
BseDI CCNNGG 4 cut(s) 28, 429, 501, 777
BseGI GGATG 4 cut(s) 97, 345, 607, 766
BseLI CCNNNNNNNGG 1 cut(s) 825
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 3 cut(s) 642, 747, 815
BseNI ACTGG 3 cut(s) 738, 896, 937
BseRI GAGGAG 2 cut(s) 815, 818
BseXI GCAGC 2 cut(s) 315, 496
BseYI CCCAGC 1 cut(s) 213
BsgI GTGCAG 3 cut(s) 270, 690, 714
BshFI GGCC 2 cut(s) 370, 512
BshVI ATCGAT 2 cut(s) 839, 846
BsiSI CCGG 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 825
BsmAI GTCTC 1 cut(s) 622
BsmI GAATGC 1 cut(s) 473
BsnI GGCC 2 cut(s) 370, 512
Bso31I GGTCTC 1 cut(s) 622
Bsp143I GATC 5 cut(s) 33, 529, 537, 674, 840
Bsp1720I GCTNAGC 2 cut(s) 557, 651
BspACI CCGC 2 cut(s) 135, 332
BspANI GGCC 2 cut(s) 370, 512
BspCNI CTCAG 3 cut(s) 643, 748, 816
BspDI ATCGAT 2 cut(s) 839, 846
BspLI GGNNCC 2 cut(s) 9, 277
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 2 cut(s) 41, 682
BspTNI GGTCTC 1 cut(s) 622
BsrDI GCAATG 1 cut(s) 117
BsrI ACTGG 3 cut(s) 738, 896, 937
BssECI CCNNGG 4 cut(s) 28, 429, 501, 777
BssMI GATC 5 cut(s) 33, 529, 537, 674, 840
BssT1I CCWWGG 3 cut(s) 429, 501, 777
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 6 cut(s) 51, 130, 517, 609, 637, 879
BstAPI GCANNNNNTGC 4 cut(s) 248, 668, 677, 820
BstC8I GCNNGC 2 cut(s) 372, 664
BstDEI CTNAG 5 cut(s) 315, 557, 651, 756, 824
BstF5I GGATG 4 cut(s) 97, 345, 607, 766
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 5 cut(s) 36, 532, 540, 677, 843
BstMAI GTCTC 1 cut(s) 622
BstMBI GATC 5 cut(s) 33, 529, 537, 674, 840
BstMWI GCNNNNNNNGC 8 cut(s) 248, 257, 284, 518, 668, 677, 737, 820
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 2 cut(s) 315, 496
BstX2I RGATCY 1 cut(s) 674
BstYI RGATCY 1 cut(s) 674
Bsu15I ATCGAT 2 cut(s) 839, 846
BsuRI GGCC 2 cut(s) 370, 512
BsuTUI ATCGAT 2 cut(s) 839, 846
BtsCI GGATG 4 cut(s) 97, 345, 607, 766
BtsI GCAGTG 1 cut(s) 673
BtsIMutI CAGTG 2 cut(s) 673, 731
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 2 cut(s) 372, 664
CaiI CAGNNNCTG 1 cut(s) 677
CfoI GCGC 1 cut(s) 262
ClaI ATCGAT 2 cut(s) 839, 846
Csp6I GTAC 1 cut(s) 322
CviAII CATG 2 cut(s) 562, 820
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 5 cut(s) 315, 557, 651, 756, 824
DpnI GATC 5 cut(s) 35, 531, 539, 676, 842
DpnII GATC 5 cut(s) 33, 529, 537, 674, 840
DraIII CACNNNGTG 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 510
EciI GGCGGA 1 cut(s) 124
Eco130I CCWWGG 3 cut(s) 429, 501, 777
Eco31I GGTCTC 1 cut(s) 622
Eco47III AGCGCT 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 3 cut(s) 429, 501, 777
ErhI CCWWGG 3 cut(s) 429, 501, 777
FaeI CATG 2 cut(s) 565, 823
FatI CATG 2 cut(s) 561, 819
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 3 cut(s) 329, 332, 485
FokI GGATG 4 cut(s) 104, 332, 614, 773
Fsp4HI GCNGC 3 cut(s) 329, 332, 485
FspBI CTAG 1 cut(s) 381
GlaI GCGC 1 cut(s) 261
GluI GCNGC 3 cut(s) 329, 332, 485
GsaI CCCAGC 1 cut(s) 217
GsuI CTGGAG 1 cut(s) 879
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 2 cut(s) 370, 512
HapII CCGG 1 cut(s) 335
HhaI GCGC 1 cut(s) 262
Hin1II CATG 2 cut(s) 565, 823
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HpaII CCGG 1 cut(s) 335
HphI GGTGA 3 cut(s) 220, 601, 757
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 6 cut(s) 38, 91, 149, 534, 546, 622
Hpy188III TCNNGA 5 cut(s) 168, 268, 685, 869, 882
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 4 cut(s) 391, 580, 652, 778
HpyCH4III ACNGT 6 cut(s) 51, 130, 517, 609, 637, 879
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 8 cut(s) 193, 242, 251, 308, 671, 731, 746, 857
HpyF10VI GCNNNNNNNGC 8 cut(s) 248, 257, 284, 518, 668, 677, 737, 820
HpyF3I CTNAG 5 cut(s) 315, 557, 651, 756, 824
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 2 cut(s) 565, 823
HspAI GCGC 1 cut(s) 260
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 5 cut(s) 33, 529, 537, 674, 840
LmnI GCTCC 5 cut(s) 13, 49, 275, 710, 737
Lsp1109I GCAGC 2 cut(s) 315, 496
LweI GCATC 2 cut(s) 229, 515
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 5 cut(s) 58, 226, 298, 376, 763
MalI GATC 5 cut(s) 35, 531, 539, 676, 842
MboI GATC 5 cut(s) 33, 529, 537, 674, 840
MboII GAAGA 2 cut(s) 416, 547
MflI RGATCY 1 cut(s) 674
MnlI CCTC 6 cut(s) 751, 793, 796, 819, 825, 903
MroXI GAANNNNTTC 1 cut(s) 130
MseI TTAA 2 cut(s) 105, 234
MslI CAYNNNNRTG 1 cut(s) 870
MspA1I CMGCKG 2 cut(s) 56, 328
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 473
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 8 cut(s) 248, 257, 284, 518, 668, 677, 737, 820
NdeII GATC 5 cut(s) 33, 529, 537, 674, 840
NlaIII CATG 2 cut(s) 565, 823
NlaIV GGNNCC 2 cut(s) 9, 277
NmuCI GTSAC 4 cut(s) 58, 226, 298, 763
PaqCI CACCTGC 1 cut(s) 319
PcsI WCGNNNNNNNCGW 1 cut(s) 722
PctI GAATGC 1 cut(s) 473
PdmI GAANNNNTTC 1 cut(s) 130
PkrI GCNGC 3 cut(s) 330, 333, 486
Psp6I CCWGG 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 213
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 9, 277
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 1 cut(s) 674
PvuII CAGCTG 2 cut(s) 56, 328
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 870
SaqAI TTAA 2 cut(s) 105, 234
SatI GCNGC 3 cut(s) 329, 332, 485
Sau3AI GATC 5 cut(s) 33, 529, 537, 674, 840
ScrFI CCNGG 1 cut(s) 29
SfaNI GCATC 2 cut(s) 229, 515
SfcI CTRYAG 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 870
SmlI CTYRAG 1 cut(s) 685
SmoI CTYRAG 1 cut(s) 685
SpeI ACTAGT 1 cut(s) 380
SsiI CCGC 2 cut(s) 135, 332
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 3 cut(s) 429, 501, 777
TaaI ACNGT 6 cut(s) 51, 130, 517, 609, 637, 879
TaiI ACGT 1 cut(s) 186
TaqI TCGA 4 cut(s) 477, 725, 839, 846
TaqII GACCGA 1 cut(s) 530
TauI GCSGC 1 cut(s) 334
Tru1I TTAA 2 cut(s) 105, 234
Tru9I TTAA 2 cut(s) 105, 234
TscAI CASTG 2 cut(s) 673, 738
TseFI GTSAC 4 cut(s) 58, 226, 298, 763
TseI GCWGC 2 cut(s) 328, 484
Tsp45I GTSAC 4 cut(s) 58, 226, 298, 763
TspDTI ATGAA 3 cut(s) 150, 618, 888
TspRI CASTG 2 cut(s) 673, 738
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.