Rroxscaffold_5G00383250

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010838
Physical Location & Seq
Forward (+)
62898930 .. 62904227
5298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383250.1

Sequence Viewer

Length: 1692 bp
ATGGTAGGCTGTGAACTTTCTGAAAAGACAAAGAAAACAGATTGGCTTAATACCCTTTTGCATAGCAAGTTCTTCGGTTCCTGTGGTGTTCATCATGATCTTCGCAAAAACGAGAAGAATGTGTTTTGCATTGACTGTAGTCTCCGGCTCTGTAGGCACTGTATGAAAGCTCATTGTCTCCATACAAAGCTTCAAATCTGCAAATATGTATATCATGATGTAGTTCGCCTTCAAGAAATTCAGAAGCATGTTGATTGTGCTAGAATTCAGACATATAAAATCAATGGTGACAAAGCTGTGCATCTAAATCCTCGTCCAATGTCCAAGGATGCCAAACCATCAACAAAAGCAAAGTTTGGTTCTGCTTGTGATGTTTGTTGTAGATATCTACAAGACATGCCAAATCGCTTCTGCTCCATTGCTTGTAAGGCCTCTGTAGAATCAGTGAAGCCTAAACACCAAAGTCAGGAATTCATCGCCTTTGGAATTCCAGAATGTGGTGGCTATTCACCTCAAGGGAATAACAATTCGGAAACATATATGAGTGAAATGGAATCCTCGATCTCGTCTGAGGAGATGAATGCTTGGGTAAGTTCATCACTGAAGCCAAGGAGGCATTTGCACAAGAGGAAAGGAATCCCTCACAGGAGTAAAGATCTAAAATGCATTTACTTTTGTTTATCTGGAGGTTTTGCTTCAATTTCAAGTAATAATCGAAAAGATTCGGTGCAGGCTCCGGCGGACAATGTAAATCAGGGGATCGGAGAAGCTCCGCAGTCAGCTGCCACACCCAACAGCACAATTGATGTTTCAGATGTGAAGACAATTAAAGTTGGCAACATTTCACGAATTGTTAACGACAGAGATATCAGAGAATTCTTTTCATTTTCTGGAGAAATTAGATATGTTGAAATGCAAAGAGAAACCGAAAACACCCAACTTTCTTATGTCACCTTTAATGATGCACAAGGTGCAGATACAGCGATTCTCCTATCGGTGTCGTGTCTAATATCAATTCAGGGAGCCACCATAGGTAATCTGCCTGTCACTATTGCACCTGCTACGGAATACCAGCTGCCGCCGGAAGCTCTCATCCCATCAAGCTCGTTGAAAAAGCCAGCAGTAACTAGTTCTGCTCTAGAGAAGGCAGAAGATGTGGTCAGCACTATGGCTGCTAAGGGTTACATCTTGGGAAAGGATGCCCTTAGCAAGGCAAAAGCATTCGACGAGCAACATAACTTGACGTCCAAGGCATCGGCCACGGTTGTTACCATTGATCAGAGGATCGGTCTGATGGAGAAAATAAGCATGGGAAGAGCTGTTGTCAATGAAAAGGTGAAACAGATGGATGAACGGTTCTTGGTCTCCGAAAAGACCAAATCTGTCTTTGCTGTTGCTGAGCAGACGGCAAGCAGTGCAGGATCTGCTATAATGAGCAACCCTTACGTAATTAGTGGAGCTTCGTGGGTTTCGAATGCACTGAATGTGTTTGCAAAGGCAGCTGAGGATGTGACCACGAAAACCAAGGAGAAGGTTGTTAAGGCCGAGGAGGAGAAACAGGAGACCATGATCAGGCAGAGGACAGCGATCATCAATGACTTTGCACAGAACCATCTTGATGAACCGTCTGGAAATGAGCTTCCGGTAGTTCAAACAAAATCTGCTGATGACACAGGGCCTGGACTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

563

Amino Acids

61.88

Weight (kDa)

8.4

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 68 - 143 9.3e-26 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010838)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67950 AT1G67950 AT1G67950 AT1G67950
fragaria_vesca FvH4_4g33260
malus_domestica MD13G1017900.v1.1 MD16G1015900.v1.1
prunus_persica Prupe.1G335700_v2.0.a1
pyrus_communis pycom13g01530 pycom16g01480
rosa_chinensis RchiOBHm_Chr4g0442411
rosa_laevigata RLG00000006012
rosa_multiflora Rmu_ssc0000204.1_g000062
rosa_roxburghii Rroxscaffold_5G00383250
rosa_rugosa Rorug04G0340900
rosa_samantha Rh4AG392600 Rh4BG406200 Rh4CG421400 Rh4DG399400
rosa_wichuraiana Rw4G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1066
AatII GACGTC 1 cut(s) 1247
Acc36I ACCTGC 1 cut(s) 1066
AccB7I CCANNNNNTGG 1 cut(s) 497
AciI CCGC 3 cut(s) 740, 773, 1079
AclWI GGATC 3 cut(s) 767, 1292, 1429
AcoI YGGCCR 1 cut(s) 1257
AcsI RAATTY 5 cut(s) 237, 264, 470, 486, 875
AcuI CTGAAG 1 cut(s) 623
AcyI GRCGYC 1 cut(s) 1244
AdeI CACNNNGTG 1 cut(s) 971
AfiI CCNNNNNNNGG 4 cut(s) 466, 497, 1210, 1572
AgsI TTSAA 7 cut(s) 194, 233, 699, 705, 911, 1111, 1652
AhlI ACTAGT 1 cut(s) 1127
AjnI CCWGG 1 cut(s) 1678
AloI GAACNNNNNNTCC 2 cut(s) 1340, 1372
Alw26I GTCTC 4 cut(s) 146, 182, 1369, 1556
AlwI GGATC 3 cut(s) 767, 1292, 1429
AlwNI CAGNNNCTG 2 cut(s) 1424, 1679
AoxI GGCC 4 cut(s) 429, 1257, 1542, 1676
ApeKI GCWGC 4 cut(s) 782, 1075, 1172, 1499
ApoI RAATTY 5 cut(s) 237, 264, 470, 486, 875
Asp700I GAANNNNTTC 1 cut(s) 721
AspS9I GGNCC 1 cut(s) 1676
AsuHPI GGTGA 4 cut(s) 299, 501, 943, 1348
AsuII TTCGAA 1 cut(s) 1472
BarI GAAGNNNNNNTAC 2 cut(s) 213, 245
BbsI GAAGAC 1 cut(s) 827
BbvCI CCTCAGC 1 cut(s) 1503
BbvI GCAGC 4 cut(s) 769, 1062, 1159, 1511
BccI CCATC 5 cut(s) 346, 1105, 1288, 1339, 1620
BceAI ACGGC 1 cut(s) 1422
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciT130I CCWGG 1 cut(s) 1680
BclI TGATCA 2 cut(s) 1276, 1569
BcoDI GTCTC 4 cut(s) 146, 182, 1369, 1556
BcuI ACTAGT 1 cut(s) 1127
BfaI CTAG 3 cut(s) 261, 1128, 1139
BfmI CTRYAG 3 cut(s) 136, 151, 435
BfuAI ACCTGC 1 cut(s) 1066
BglI GCCNNNNNGGC 1 cut(s) 613
BglII AGATCT 1 cut(s) 655
BisI GCNGC 5 cut(s) 783, 1076, 1079, 1173, 1500
BlpI GCTNAGC 1 cut(s) 1398
BlsI GCNGC 5 cut(s) 784, 1077, 1080, 1174, 1501
Bme1390I CCNGG 1 cut(s) 1680
BmgT120I GGNCC 1 cut(s) 1676
BmiI GGNNCC 3 cut(s) 79, 735, 1024
BmrFI CCNGG 1 cut(s) 1680
BmsI GCATC 5 cut(s) 310, 319, 952, 1189, 1262
BoxI GACNNNNGTC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 827
BpmI CTGGAG 2 cut(s) 705, 912
Bpu10I CCTNAGC 3 cut(s) 1176, 1205, 1503
Bpu1102I GCTNAGC 1 cut(s) 1398
Bpu14I TTCGAA 1 cut(s) 1472
BpuEI CTTGAG 1 cut(s) 498
BsaAI YACGTR 1 cut(s) 1447
BsaHI GRCGYC 1 cut(s) 1244
BsaI GGTCTC 2 cut(s) 1369, 1556
BsaJI CCNNGG 6 cut(s) 324, 608, 1248, 1260, 1524, 1545
BsaWI WCCGGW 1 cut(s) 1642
Bsc4I CCNNNNNNNGG 4 cut(s) 466, 497, 1210, 1572
Bse3DI GCAATG 1 cut(s) 417
BseBI CCWGG 1 cut(s) 1680
BseDI CCNNGG 6 cut(s) 324, 608, 1248, 1260, 1524, 1545
BseGI GGATG 5 cut(s) 334, 1092, 1204, 1354, 1513
BseLI CCNNNNNNNGG 4 cut(s) 466, 497, 1210, 1572
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 3 cut(s) 561, 1389, 1494
BseRI GAGGAG 3 cut(s) 587, 1562, 1565
BseXI GCAGC 4 cut(s) 769, 1062, 1159, 1511
BsgI GTGCAG 3 cut(s) 749, 993, 1437
BshFI GGCC 4 cut(s) 431, 1259, 1544, 1678
BsiSI CCGG 4 cut(s) 145, 737, 1082, 1643
BslI CCNNNNNNNGG 4 cut(s) 466, 497, 1210, 1572
BsmAI GTCTC 4 cut(s) 146, 182, 1369, 1556
BsmI GAATGC 3 cut(s) 586, 1220, 1480
BsnI GGCC 4 cut(s) 431, 1259, 1544, 1678
Bso31I GGTCTC 2 cut(s) 1369, 1556
Bsp119I TTCGAA 1 cut(s) 1472
Bsp143I GATC 9 cut(s) 97, 561, 655, 759, 1276, 1284, 1421, 1569, 1587
Bsp1720I GCTNAGC 1 cut(s) 1398
BspACI CCGC 3 cut(s) 740, 773, 1079
BspANI GGCC 4 cut(s) 431, 1259, 1544, 1678
BspCNI CTCAG 3 cut(s) 562, 1390, 1495
BspHI TCATGA 2 cut(s) 94, 214
BspLI GGNNCC 3 cut(s) 79, 735, 1024
BspMI ACCTGC 1 cut(s) 1066
BspPI GGATC 3 cut(s) 767, 1292, 1429
BspQI GCTCTTC 1 cut(s) 1309
BspT104I TTCGAA 1 cut(s) 1472
BspTNI GGTCTC 2 cut(s) 1369, 1556
BsrDI GCAATG 1 cut(s) 417
BssECI CCNNGG 6 cut(s) 324, 608, 1248, 1260, 1524, 1545
BssMI GATC 9 cut(s) 97, 561, 655, 759, 1276, 1284, 1421, 1569, 1587
BssNI GRCGYC 1 cut(s) 1244
BssT1I CCWWGG 4 cut(s) 324, 608, 1248, 1524
Bst2UI CCWGG 1 cut(s) 1680
Bst4CI ACNGT 5 cut(s) 137, 161, 1264, 1356, 1626
Bst6I CTCTTC 1 cut(s) 1309
BstACI GRCGYC 1 cut(s) 1244
BstAPI GCANNNNNTGC 3 cut(s) 971, 1415, 1424
BstBAI YACGTR 1 cut(s) 1447
BstBI TTCGAA 1 cut(s) 1472
BstC8I GCNNGC 3 cut(s) 732, 1119, 1411
BstDEI CTNAG 5 cut(s) 570, 1176, 1205, 1398, 1503
BstDSI CCRYGG 1 cut(s) 1260
BstENI CCTNNNNNAGG 1 cut(s) 1208
BstF5I GGATG 5 cut(s) 334, 1092, 1204, 1354, 1513
BstKTI GATC 9 cut(s) 100, 564, 658, 762, 1279, 1287, 1424, 1572, 1590
BstMAI GTCTC 4 cut(s) 146, 182, 1369, 1556
BstMBI GATC 9 cut(s) 97, 561, 655, 759, 1276, 1284, 1421, 1569, 1587
BstMWI GCNNNNNNNGC 8 cut(s) 154, 428, 613, 971, 980, 1415, 1424, 1499
BstNI CCWGG 1 cut(s) 1680
BstNSI RCATGY 2 cut(s) 251, 400
BstPAI GACNNNNGTC 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 1678
BstSFI CTRYAG 3 cut(s) 136, 151, 435
BstSNI TACGTA 1 cut(s) 1447
BstV1I GCAGC 4 cut(s) 769, 1062, 1159, 1511
BstV2I GAAGAC 1 cut(s) 827
BstX2I RGATCY 2 cut(s) 655, 1421
BstYI RGATCY 2 cut(s) 655, 1421
BsuRI GGCC 4 cut(s) 431, 1259, 1544, 1678
BtgI CCRYGG 1 cut(s) 1260
BtgZI GCGATG 1 cut(s) 460
BtsCI GGATG 5 cut(s) 334, 1092, 1204, 1354, 1513
BtsI GCAGTG 1 cut(s) 1420
BtsIMutI CAGTG 5 cut(s) 157, 450, 599, 1420, 1478
BveI ACCTGC 1 cut(s) 1066
Cac8I GCNNGC 3 cut(s) 732, 1119, 1411
CaiI CAGNNNCTG 2 cut(s) 1424, 1679
CciI TCATGA 2 cut(s) 94, 214
Cfr13I GGNCC 1 cut(s) 1676
CviAII CATG 6 cut(s) 95, 215, 248, 397, 1309, 1567
DdeI CTNAG 5 cut(s) 570, 1176, 1205, 1398, 1503
DpnI GATC 9 cut(s) 99, 563, 657, 761, 1278, 1286, 1423, 1571, 1589
DpnII GATC 9 cut(s) 97, 561, 655, 759, 1276, 1284, 1421, 1569, 1587
DraIII CACNNNGTG 1 cut(s) 971
EaeI YGGCCR 1 cut(s) 1257
Eam1104I CTCTTC 1 cut(s) 1309
EarI CTCTTC 1 cut(s) 1309
EciI GGCGGA 1 cut(s) 755
Eco105I TACGTA 1 cut(s) 1447
Eco130I CCWWGG 4 cut(s) 324, 608, 1248, 1524
Eco147I AGGCCT 1 cut(s) 431
Eco31I GGTCTC 2 cut(s) 1369, 1556
Eco32I GATATC 2 cut(s) 386, 868
Eco57I CTGAAG 1 cut(s) 623
EcoNI CCTNNNNNAGG 1 cut(s) 1208
EcoO109I RGGNCCY 1 cut(s) 1676
EcoRI GAATTC 4 cut(s) 264, 470, 486, 875
EcoRII CCWGG 1 cut(s) 1678
EcoRV GATATC 2 cut(s) 386, 868
EcoT14I CCWWGG 4 cut(s) 324, 608, 1248, 1524
EcoT22I ATGCAT 1 cut(s) 668
ErhI CCWWGG 4 cut(s) 324, 608, 1248, 1524
FaeI CATG 6 cut(s) 98, 218, 251, 400, 1312, 1570
FatI CATG 6 cut(s) 94, 214, 247, 396, 1308, 1566
FbaI TGATCA 2 cut(s) 1276, 1569
Fnu4HI GCNGC 5 cut(s) 783, 1076, 1079, 1173, 1500
FokI GGATG 5 cut(s) 341, 1079, 1211, 1361, 1520
Fsp4HI GCNGC 5 cut(s) 783, 1076, 1079, 1173, 1500
FspBI CTAG 3 cut(s) 261, 1128, 1139
GluI GCNGC 5 cut(s) 783, 1076, 1079, 1173, 1500
GsuI CTGGAG 2 cut(s) 705, 912
HaeIII GGCC 4 cut(s) 431, 1259, 1544, 1678
HapII CCGG 4 cut(s) 145, 737, 1082, 1643
Hin1I GRCGYC 1 cut(s) 1244
Hin1II CATG 6 cut(s) 98, 218, 251, 400, 1312, 1570
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 5 cut(s) 440, 554, 636, 722, 985
HpaI GTTAAC 1 cut(s) 856
HpaII CCGG 4 cut(s) 145, 737, 1082, 1643
HphI GGTGA 4 cut(s) 299, 501, 943, 1348
Hpy166II GTNNAC 2 cut(s) 14, 856
Hpy8I GTNNAC 2 cut(s) 14, 856
Hpy99I CGWCG 1 cut(s) 1229
HpyAV CCTTC 3 cut(s) 239, 1138, 1525
HpyCH4III ACNGT 5 cut(s) 137, 161, 1264, 1356, 1626
HpyCH4IV ACGT 2 cut(s) 1244, 1446
HpyF10VI GCNNNNNNNGC 8 cut(s) 154, 428, 613, 971, 980, 1415, 1424, 1499
HpyF3I CTNAG 5 cut(s) 570, 1176, 1205, 1398, 1503
HpySE526I ACGT 2 cut(s) 1244, 1446
Hsp92I GRCGYC 1 cut(s) 1244
Hsp92II CATG 6 cut(s) 98, 218, 251, 400, 1312, 1570
Ksp22I TGATCA 2 cut(s) 1276, 1569
KspAI GTTAAC 1 cut(s) 856
Kzo9I GATC 9 cut(s) 97, 561, 655, 759, 1276, 1284, 1421, 1569, 1587
LguI GCTCTTC 1 cut(s) 1309
LmnI GCTCC 5 cut(s) 419, 739, 775, 1022, 1457
Lsp1109I GCAGC 4 cut(s) 769, 1062, 1159, 1511
LweI GCATC 5 cut(s) 310, 319, 952, 1189, 1262
MaeI CTAG 3 cut(s) 261, 1128, 1139
MaeII ACGT 2 cut(s) 1244, 1446
MaeIII GTNAC 7 cut(s) 287, 949, 1045, 1123, 1181, 1267, 1510
MalI GATC 9 cut(s) 99, 563, 657, 761, 1278, 1286, 1423, 1571, 1589
MboI GATC 9 cut(s) 97, 561, 655, 759, 1276, 1284, 1421, 1569, 1587
MboII GAAGA 6 cut(s) 64, 92, 127, 832, 1163, 1326
MfeI CAATTG 1 cut(s) 801
MflI RGATCY 2 cut(s) 655, 1421
Mph1103I ATGCAT 1 cut(s) 668
MroXI GAANNNNTTC 1 cut(s) 721
MseI TTAA 5 cut(s) 48, 828, 855, 957, 1539
MslI CAYNNNNRTG 1 cut(s) 1617
MspA1I CMGCKG 3 cut(s) 782, 1075, 1502
MspI CCGG 4 cut(s) 145, 737, 1082, 1643
MspR9I CCNGG 1 cut(s) 1680
MunI CAATTG 1 cut(s) 801
Mva1269I GAATGC 3 cut(s) 586, 1220, 1480
MvaI CCWGG 1 cut(s) 1680
MwoI GCNNNNNNNGC 8 cut(s) 154, 428, 613, 971, 980, 1415, 1424, 1499
NdeII GATC 9 cut(s) 97, 561, 655, 759, 1276, 1284, 1421, 1569, 1587
NlaIII CATG 6 cut(s) 98, 218, 251, 400, 1312, 1570
NlaIV GGNNCC 3 cut(s) 79, 735, 1024
NmeAIII GCCGAG 1 cut(s) 1570
NmuCI GTSAC 4 cut(s) 287, 949, 1045, 1510
NsiI ATGCAT 1 cut(s) 668
NspI RCATGY 2 cut(s) 251, 400
NspV TTCGAA 1 cut(s) 1472
PagI TCATGA 2 cut(s) 94, 214
PaqCI CACCTGC 1 cut(s) 1066
PceI AGGCCT 1 cut(s) 431
PciSI GCTCTTC 1 cut(s) 1309
PcsI WCGNNNNNNNCGW 1 cut(s) 1469
PctI GAATGC 3 cut(s) 586, 1220, 1480
PdmI GAANNNNTTC 1 cut(s) 721
PfeI GAWTC 5 cut(s) 440, 554, 636, 722, 985
PflMI CCANNNNNTGG 1 cut(s) 497
PkrI GCNGC 5 cut(s) 784, 1077, 1080, 1174, 1501
Ppu21I YACGTR 1 cut(s) 1447
PshAI GACNNNNGTC 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 1678
PspGI CCWGG 1 cut(s) 1678
PspN4I GGNNCC 3 cut(s) 79, 735, 1024
PspPI GGNCC 1 cut(s) 1676
PstNI CAGNNNCTG 2 cut(s) 1424, 1679
PsuI RGATCY 2 cut(s) 655, 1421
PvuII CAGCTG 3 cut(s) 782, 1075, 1502
RseI CAYNNNNRTG 1 cut(s) 1617
SapI GCTCTTC 1 cut(s) 1309
SaqAI TTAA 5 cut(s) 48, 828, 855, 957, 1539
SatI GCNGC 5 cut(s) 783, 1076, 1079, 1173, 1500
Sau3AI GATC 9 cut(s) 97, 561, 655, 759, 1276, 1284, 1421, 1569, 1587
Sau96I GGNCC 1 cut(s) 1676
ScrFI CCNGG 1 cut(s) 1680
SfaNI GCATC 5 cut(s) 310, 319, 952, 1189, 1262
SfcI CTRYAG 3 cut(s) 136, 151, 435
SfuI TTCGAA 1 cut(s) 1472
SmiMI CAYNNNNRTG 1 cut(s) 1617
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
SnaBI TACGTA 1 cut(s) 1447
SpeI ACTAGT 1 cut(s) 1127
SseBI AGGCCT 1 cut(s) 431
SsiI CCGC 3 cut(s) 740, 773, 1079
SspMI CTAG 3 cut(s) 261, 1128, 1139
StuI AGGCCT 1 cut(s) 431
StyD4I CCNGG 1 cut(s) 1678
StyI CCWWGG 4 cut(s) 324, 608, 1248, 1524
TaaI ACNGT 5 cut(s) 137, 161, 1264, 1356, 1626
TaiI ACGT 2 cut(s) 1247, 1449
TaqI TCGA 4 cut(s) 560, 715, 1224, 1472
TaqII GACCGA 1 cut(s) 1277
TauI GCSGC 1 cut(s) 1081
TfiI GAWTC 5 cut(s) 440, 554, 636, 722, 985
Tru1I TTAA 5 cut(s) 48, 828, 855, 957, 1539
Tru9I TTAA 5 cut(s) 48, 828, 855, 957, 1539
TscAI CASTG 5 cut(s) 164, 450, 606, 1420, 1485
TseFI GTSAC 4 cut(s) 287, 949, 1045, 1510
TseI GCWGC 4 cut(s) 782, 1075, 1172, 1499
Tsp45I GTSAC 4 cut(s) 287, 949, 1045, 1510
TspDTI ATGAA 9 cut(s) 80, 179, 463, 585, 593, 873, 1344, 1365, 1635
TspGWI ACGGA 1 cut(s) 1079
TspRI CASTG 5 cut(s) 164, 450, 606, 1420, 1485
Van91I CCANNNNNTGG 1 cut(s) 497
XagI CCTNNNNNAGG 1 cut(s) 1208
XapI RAATTY 5 cut(s) 237, 264, 470, 486, 875
XbaI TCTAGA 1 cut(s) 1138
XceI RCATGY 2 cut(s) 251, 400
XmnI GAANNNNTTC 1 cut(s) 721
XspI CTAG 3 cut(s) 261, 1128, 1139
ZraI GACGTC 1 cut(s) 1245
Zsp2I ATGCAT 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.