RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G67950 AT1G67950 AT1G67950 AT1G67950 |
| fragaria_vesca | FvH4_4g33260 |
| malus_domestica | MD13G1017900.v1.1 MD16G1015900.v1.1 |
| prunus_persica | Prupe.1G335700_v2.0.a1 |
| pyrus_communis | pycom13g01530 pycom16g01480 |
| rosa_chinensis | RchiOBHm_Chr4g0442411 |
| rosa_laevigata | RLG00000006012 |
| rosa_multiflora | Rmu_ssc0000204.1_g000062 |
| rosa_roxburghii | Rroxscaffold_5G00383250 |
| rosa_rugosa | Rorug04G0340900 |
| rosa_samantha | Rh4AG392600 Rh4BG406200 Rh4CG421400 Rh4DG399400 |
| rosa_wichuraiana | Rw4G033910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 434 |
| Acc65I | GGTACC | 1 cut(s) | 455 |
| AccB1I | GGYRCC | 1 cut(s) | 455 |
| AclWI | GGATC | 2 cut(s) | 479, 616 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcyI | GRCGYC | 1 cut(s) | 431 |
| AdeI | CACNNNGTG | 2 cut(s) | 269, 671 |
| AfaI | GTAC | 1 cut(s) | 457 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 397, 759 |
| AgsI | TTSAA | 3 cut(s) | 209, 298, 839 |
| AhlI | ACTAGT | 1 cut(s) | 314 |
| AjnI | CCWGG | 1 cut(s) | 865 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 527, 559 |
| AluBI | AGCT | 4 cut(s) | 506, 647, 689, 826 |
| AluI | AGCT | 4 cut(s) | 506, 647, 689, 826 |
| Alw26I | GTCTC | 2 cut(s) | 556, 743 |
| AlwI | GGATC | 2 cut(s) | 479, 616 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 611, 866 |
| AoxI | GGCC | 2 cut(s) | 729, 863 |
| ApeKI | GCWGC | 2 cut(s) | 359, 686 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| Asp718I | GGTACC | 1 cut(s) | 455 |
| AspS9I | GGNCC | 2 cut(s) | 729, 863 |
| AsuHPI | GGTGA | 3 cut(s) | 127, 241, 535 |
| AsuII | TTCGAA | 1 cut(s) | 659 |
| AsuNHI | GCTAGC | 1 cut(s) | 65 |
| BanI | GGYRCC | 1 cut(s) | 455 |
| BbsI | GAAGAC | 1 cut(s) | 125 |
| BbvCI | CCTCAGC | 1 cut(s) | 690 |
| BbvI | GCAGC | 2 cut(s) | 346, 698 |
| BccI | CCATC | 3 cut(s) | 475, 526, 807 |
| BceAI | ACGGC | 1 cut(s) | 609 |
| BciT130I | CCWGG | 1 cut(s) | 867 |
| BclI | TGATCA | 2 cut(s) | 463, 756 |
| BcoDI | GTCTC | 2 cut(s) | 556, 743 |
| BcuI | ACTAGT | 1 cut(s) | 314 |
| BfaI | CTAG | 3 cut(s) | 66, 315, 326 |
| BisI | GCNGC | 2 cut(s) | 360, 687 |
| BlpI | GCTNAGC | 1 cut(s) | 585 |
| BlsI | GCNGC | 2 cut(s) | 361, 688 |
| Bme1390I | CCNGG | 1 cut(s) | 867 |
| BmgT120I | GGNCC | 2 cut(s) | 729, 863 |
| BmiI | GGNNCC | 1 cut(s) | 457 |
| BmrFI | CCNGG | 1 cut(s) | 867 |
| BmsI | GCATC | 3 cut(s) | 250, 376, 449 |
| BmtI | GCTAGC | 1 cut(s) | 69 |
| BpiI | GAAGAC | 1 cut(s) | 125 |
| BpmI | CTGGAG | 1 cut(s) | 210 |
| Bpu10I | CCTNAGC | 2 cut(s) | 392, 690 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 585 |
| Bpu14I | TTCGAA | 1 cut(s) | 659 |
| BsaAI | YACGTR | 1 cut(s) | 634 |
| BsaHI | GRCGYC | 1 cut(s) | 431 |
| BsaI | GGTCTC | 2 cut(s) | 556, 743 |
| BsaJI | CCNNGG | 6 cut(s) | 70, 363, 435, 447, 711, 732 |
| BsaWI | WCCGGW | 1 cut(s) | 829 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 397, 759 |
| BseBI | CCWGG | 1 cut(s) | 867 |
| BseDI | CCNNGG | 6 cut(s) | 70, 363, 435, 447, 711, 732 |
| BseGI | GGATG | 3 cut(s) | 391, 541, 700 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 397, 759 |
| BseMII | CTCAG | 3 cut(s) | 576, 659, 681 |
| BseRI | GAGGAG | 2 cut(s) | 749, 752 |
| BseXI | GCAGC | 2 cut(s) | 346, 698 |
| BsgI | GTGCAG | 2 cut(s) | 291, 624 |
| BshFI | GGCC | 2 cut(s) | 731, 865 |
| BshNI | GGYRCC | 1 cut(s) | 455 |
| BsiSI | CCGG | 1 cut(s) | 830 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 397, 759 |
| BsmAI | GTCTC | 2 cut(s) | 556, 743 |
| BsmI | GAATGC | 2 cut(s) | 407, 667 |
| BsnI | GGCC | 2 cut(s) | 731, 865 |
| Bso31I | GGTCTC | 2 cut(s) | 556, 743 |
| Bsp119I | TTCGAA | 1 cut(s) | 659 |
| Bsp143I | GATC | 5 cut(s) | 463, 471, 608, 756, 774 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 585 |
| BspANI | GGCC | 2 cut(s) | 731, 865 |
| BspCNI | CTCAG | 3 cut(s) | 577, 660, 682 |
| BspLI | GGNNCC | 1 cut(s) | 457 |
| BspOI | GCTAGC | 1 cut(s) | 69 |
| BspPI | GGATC | 2 cut(s) | 479, 616 |
| BspQI | GCTCTTC | 1 cut(s) | 496 |
| BspT104I | TTCGAA | 1 cut(s) | 659 |
| BspT107I | GGYRCC | 1 cut(s) | 455 |
| BspTNI | GGTCTC | 2 cut(s) | 556, 743 |
| BssECI | CCNNGG | 6 cut(s) | 70, 363, 435, 447, 711, 732 |
| BssMI | GATC | 5 cut(s) | 463, 471, 608, 756, 774 |
| BssNI | GRCGYC | 1 cut(s) | 431 |
| BssT1I | CCWWGG | 4 cut(s) | 70, 363, 435, 711 |
| Bst2UI | CCWGG | 1 cut(s) | 867 |
| Bst4CI | ACNGT | 3 cut(s) | 451, 543, 813 |
| Bst6I | CTCTTC | 1 cut(s) | 496 |
| BstACI | GRCGYC | 1 cut(s) | 431 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 269, 602, 611 |
| BstBAI | YACGTR | 1 cut(s) | 634 |
| BstBI | TTCGAA | 1 cut(s) | 659 |
| BstC8I | GCNNGC | 3 cut(s) | 67, 306, 598 |
| BstDEI | CTNAG | 4 cut(s) | 392, 585, 668, 690 |
| BstDSI | CCRYGG | 1 cut(s) | 447 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 395 |
| BstF5I | GGATG | 3 cut(s) | 391, 541, 700 |
| BstKTI | GATC | 5 cut(s) | 466, 474, 611, 759, 777 |
| BstMAI | GTCTC | 2 cut(s) | 556, 743 |
| BstMBI | GATC | 5 cut(s) | 463, 471, 608, 756, 774 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 269, 278, 602, 611, 686 |
| BstNI | CCWGG | 1 cut(s) | 867 |
| BstSCI | CCNGG | 1 cut(s) | 865 |
| BstSNI | TACGTA | 1 cut(s) | 634 |
| BstV1I | GCAGC | 2 cut(s) | 346, 698 |
| BstV2I | GAAGAC | 1 cut(s) | 125 |
| BstX2I | RGATCY | 1 cut(s) | 608 |
| BstYI | RGATCY | 1 cut(s) | 608 |
| BsuRI | GGCC | 2 cut(s) | 731, 865 |
| BtgI | CCRYGG | 1 cut(s) | 447 |
| BtsCI | GGATG | 3 cut(s) | 391, 541, 700 |
| BtsI | GCAGTG | 1 cut(s) | 607 |
| BtsIMutI | CAGTG | 2 cut(s) | 607, 665 |
| Cac8I | GCNNGC | 3 cut(s) | 67, 306, 598 |
| CaiI | CAGNNNCTG | 2 cut(s) | 611, 866 |
| Cfr13I | GGNCC | 2 cut(s) | 729, 863 |
| Csp6I | GTAC | 1 cut(s) | 456 |
| CviAII | CATG | 2 cut(s) | 496, 754 |
| CviQI | GTAC | 1 cut(s) | 456 |
| DdeI | CTNAG | 4 cut(s) | 392, 585, 668, 690 |
| DpnI | GATC | 5 cut(s) | 465, 473, 610, 758, 776 |
| DpnII | GATC | 5 cut(s) | 463, 471, 608, 756, 774 |
| DraIII | CACNNNGTG | 2 cut(s) | 269, 671 |
| Eam1104I | CTCTTC | 1 cut(s) | 496 |
| EarI | CTCTTC | 1 cut(s) | 496 |
| Eco105I | TACGTA | 1 cut(s) | 634 |
| Eco130I | CCWWGG | 4 cut(s) | 70, 363, 435, 711 |
| Eco31I | GGTCTC | 2 cut(s) | 556, 743 |
| Eco32I | GATATC | 1 cut(s) | 166 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 395 |
| EcoO109I | RGGNCCY | 1 cut(s) | 863 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoRII | CCWGG | 1 cut(s) | 865 |
| EcoRV | GATATC | 1 cut(s) | 166 |
| EcoT14I | CCWWGG | 4 cut(s) | 70, 363, 435, 711 |
| EcoT22I | ATGCAT | 2 cut(s) | 52, 87 |
| ErhI | CCWWGG | 4 cut(s) | 70, 363, 435, 711 |
| FaeI | CATG | 2 cut(s) | 499, 757 |
| FatI | CATG | 2 cut(s) | 495, 753 |
| FbaI | TGATCA | 2 cut(s) | 463, 756 |
| Fnu4HI | GCNGC | 2 cut(s) | 360, 687 |
| FokI | GGATG | 3 cut(s) | 398, 548, 707 |
| Fsp4HI | GCNGC | 2 cut(s) | 360, 687 |
| FspBI | CTAG | 3 cut(s) | 66, 315, 326 |
| GluI | GCNGC | 2 cut(s) | 360, 687 |
| GsuI | CTGGAG | 1 cut(s) | 210 |
| HaeIII | GGCC | 2 cut(s) | 731, 865 |
| HapII | CCGG | 1 cut(s) | 830 |
| Hin1I | GRCGYC | 1 cut(s) | 431 |
| Hin1II | CATG | 2 cut(s) | 499, 757 |
| HincII | GTYRAC | 1 cut(s) | 154 |
| HindII | GTYRAC | 1 cut(s) | 154 |
| HinfI | GANTC | 1 cut(s) | 283 |
| HpaI | GTTAAC | 1 cut(s) | 154 |
| HpaII | CCGG | 1 cut(s) | 830 |
| HphI | GGTGA | 3 cut(s) | 127, 241, 535 |
| Hpy166II | GTNNAC | 1 cut(s) | 154 |
| Hpy188I | TCNGA | 4 cut(s) | 170, 468, 480, 556 |
| Hpy188III | TCNNGA | 5 cut(s) | 144, 189, 326, 803, 816 |
| Hpy8I | GTNNAC | 1 cut(s) | 154 |
| Hpy99I | CGWCG | 1 cut(s) | 416 |
| HpyAV | CCTTC | 2 cut(s) | 325, 712 |
| HpyCH4III | ACNGT | 3 cut(s) | 451, 543, 813 |
| HpyCH4IV | ACGT | 2 cut(s) | 431, 633 |
| HpyCH4V | TGCA | 9 cut(s) | 50, 85, 214, 263, 272, 605, 665, 680, 791 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 269, 278, 602, 611, 686 |
| HpyF3I | CTNAG | 4 cut(s) | 392, 585, 668, 690 |
| HpySE526I | ACGT | 2 cut(s) | 431, 633 |
| Hsp92I | GRCGYC | 1 cut(s) | 431 |
| Hsp92II | CATG | 2 cut(s) | 499, 757 |
| KpnI | GGTACC | 1 cut(s) | 459 |
| Ksp22I | TGATCA | 2 cut(s) | 463, 756 |
| KspAI | GTTAAC | 1 cut(s) | 154 |
| Kzo9I | GATC | 5 cut(s) | 463, 471, 608, 756, 774 |
| LguI | GCTCTTC | 1 cut(s) | 496 |
| LmnI | GCTCC | 1 cut(s) | 644 |
| Lsp1109I | GCAGC | 2 cut(s) | 346, 698 |
| LweI | GCATC | 3 cut(s) | 250, 376, 449 |
| MaeI | CTAG | 3 cut(s) | 66, 315, 326 |
| MaeII | ACGT | 2 cut(s) | 431, 633 |
| MaeIII | GTNAC | 4 cut(s) | 247, 310, 368, 697 |
| MalI | GATC | 5 cut(s) | 465, 473, 610, 758, 776 |
| MboI | GATC | 5 cut(s) | 463, 471, 608, 756, 774 |
| MboII | GAAGA | 4 cut(s) | 130, 278, 350, 513 |
| MflI | RGATCY | 1 cut(s) | 608 |
| MluCI | AATT | 4 cut(s) | 147, 173, 195, 636 |
| MnlI | CCTC | 5 cut(s) | 462, 685, 727, 730, 759 |
| Mph1103I | ATGCAT | 2 cut(s) | 52, 87 |
| MseI | TTAA | 5 cut(s) | 39, 77, 126, 153, 255 |
| MslI | CAYNNNNRTG | 1 cut(s) | 804 |
| MspA1I | CMGCKG | 1 cut(s) | 689 |
| MspI | CCGG | 1 cut(s) | 830 |
| MspR9I | CCNGG | 1 cut(s) | 867 |
| Mva1269I | GAATGC | 2 cut(s) | 407, 667 |
| MvaI | CCWGG | 1 cut(s) | 867 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 269, 278, 602, 611, 686 |
| NdeII | GATC | 5 cut(s) | 463, 471, 608, 756, 774 |
| NheI | GCTAGC | 1 cut(s) | 65 |
| NlaIII | CATG | 2 cut(s) | 499, 757 |
| NlaIV | GGNNCC | 1 cut(s) | 457 |
| NmeAIII | GCCGAG | 1 cut(s) | 757 |
| NmuCI | GTSAC | 2 cut(s) | 247, 697 |
| NsiI | ATGCAT | 2 cut(s) | 52, 87 |
| NspV | TTCGAA | 1 cut(s) | 659 |
| PciSI | GCTCTTC | 1 cut(s) | 496 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 656 |
| PctI | GAATGC | 2 cut(s) | 407, 667 |
| PfeI | GAWTC | 1 cut(s) | 283 |
| PkrI | GCNGC | 2 cut(s) | 361, 688 |
| Ppu21I | YACGTR | 1 cut(s) | 634 |
| Psp6I | CCWGG | 1 cut(s) | 865 |
| PspGI | CCWGG | 1 cut(s) | 865 |
| PspN4I | GGNNCC | 1 cut(s) | 457 |
| PspPI | GGNCC | 2 cut(s) | 729, 863 |
| PstNI | CAGNNNCTG | 2 cut(s) | 611, 866 |
| PsuI | RGATCY | 1 cut(s) | 608 |
| PvuII | CAGCTG | 1 cut(s) | 689 |
| RsaI | GTAC | 1 cut(s) | 457 |
| RsaNI | GTAC | 1 cut(s) | 456 |
| RseI | CAYNNNNRTG | 1 cut(s) | 804 |
| SapI | GCTCTTC | 1 cut(s) | 496 |
| SaqAI | TTAA | 5 cut(s) | 39, 77, 126, 153, 255 |
| SatI | GCNGC | 2 cut(s) | 360, 687 |
| Sau3AI | GATC | 5 cut(s) | 463, 471, 608, 756, 774 |
| Sau96I | GGNCC | 2 cut(s) | 729, 863 |
| ScrFI | CCNGG | 1 cut(s) | 867 |
| SfaNI | GCATC | 3 cut(s) | 250, 376, 449 |
| SfuI | TTCGAA | 1 cut(s) | 659 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 804 |
| SnaBI | TACGTA | 1 cut(s) | 634 |
| SpeI | ACTAGT | 1 cut(s) | 314 |
| Sse9I | AATT | 4 cut(s) | 147, 173, 195, 636 |
| SspMI | CTAG | 3 cut(s) | 66, 315, 326 |
| StyD4I | CCNGG | 1 cut(s) | 865 |
| StyI | CCWWGG | 4 cut(s) | 70, 363, 435, 711 |
| TaaI | ACNGT | 3 cut(s) | 451, 543, 813 |
| TaiI | ACGT | 2 cut(s) | 434, 636 |
| TaqI | TCGA | 2 cut(s) | 411, 659 |
| TaqII | GACCGA | 1 cut(s) | 464 |
| TasI | AATT | 4 cut(s) | 147, 173, 195, 636 |
| TfiI | GAWTC | 1 cut(s) | 283 |
| Tru1I | TTAA | 5 cut(s) | 39, 77, 126, 153, 255 |
| Tru9I | TTAA | 5 cut(s) | 39, 77, 126, 153, 255 |
| TscAI | CASTG | 2 cut(s) | 607, 672 |
| TseFI | GTSAC | 2 cut(s) | 247, 697 |
| TseI | GCWGC | 2 cut(s) | 359, 686 |
| Tsp45I | GTSAC | 2 cut(s) | 247, 697 |
| TspDTI | ATGAA | 5 cut(s) | 41, 171, 531, 552, 822 |
| TspRI | CASTG | 2 cut(s) | 607, 672 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 395 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XbaI | TCTAGA | 1 cut(s) | 325 |
| XspI | CTAG | 3 cut(s) | 66, 315, 326 |
| ZraI | GACGTC | 1 cut(s) | 432 |
| Zsp2I | ATGCAT | 2 cut(s) | 52, 87 |