Rh4AG392600

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0010838
Physical Location & Seq
Forward (+)
69876510 .. 69878855
2346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG392600.1

Sequence Viewer

Length: 756 bp
ATGCAAAGAGAAACCGAAAACACCCAACTTTCTTATGTCACCTTTAATGATGCACAAGGTGCAGATACAGCGATTCTTCTATCGGGAGCCACCATAGGTAATCTGCCTGTCACTATTGCACCTGCTAAGGAATACCAGCTGCCACCGGAAGCTCTCATCCCATCAAGCTCGTTGAAAAAGCCAGCAGTAACTAGTTCTGCTCTAGAGAAGGCAGAAGATGTGGTCAGCACTATGGCTGCCAAGGGTTACATCTTGGGAAAGGATGCCCTTAGCAAGGCAAAAGCATTCGACGAGCAACATAACTTGACGTCCAAGGCATCAGCCACGGTTGGTACCATTGATCAGAGGATCGGTCTGATGGAGAAAATAAGCATGGGAAGAGCTGTTGTCAATGAAAAGGTGAAACAGATGGATGAACGGTTCTTGGTCTCTGAAAAGACCAAATCTGTCTTTGCTGTTGCTGAGCAGACGGCAAGCAGTGCAGGATCTGCTATAATGAGCAACCCTTACGTAATTAGTGGAGCTTCGTGGGTTTCGAATGCACTGAGTGTATTTGCAAAGGCAGCTGAGGATGTGACCACGAAAACCAAGGAGAAGGTTGTTAGGGCCGAGGAGGAGAAACAGGAGACCATGATCAGGCAGAGGACAGCGATCATCAATGACTTTGCACAGAACCATCTTGATGAACCGTCTGGAAATGAGCTTCCGGTAGTTCAAACAAAATCTGCTGATGACACAGGGCCTGGACTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

251

Amino Acids

26.81

Weight (kDa)

5.27

Isoelectric Point (pI)

28.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010838)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67950 AT1G67950 AT1G67950 AT1G67950
fragaria_vesca FvH4_4g33260
malus_domestica MD13G1017900.v1.1 MD16G1015900.v1.1
prunus_persica Prupe.1G335700_v2.0.a1
pyrus_communis pycom13g01530 pycom16g01480
rosa_chinensis RchiOBHm_Chr4g0442411
rosa_laevigata RLG00000006012
rosa_multiflora Rmu_ssc0000204.1_g000062
rosa_roxburghii Rroxscaffold_5G00383250
rosa_rugosa Rorug04G0340900
rosa_samantha Rh4AG392600 Rh4BG406200 Rh4CG421400 Rh4DG399400
rosa_wichuraiana Rw4G033910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 130
AatII GACGTC 1 cut(s) 311
Acc36I ACCTGC 1 cut(s) 130
Acc65I GGTACC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 332
AclWI GGATC 2 cut(s) 356, 493
AcyI GRCGYC 1 cut(s) 308
AdeI CACNNNGTG 2 cut(s) 59, 548
AfaI GTAC 1 cut(s) 334
AfiI CCNNNNNNNGG 2 cut(s) 274, 636
AgsI TTSAA 2 cut(s) 175, 716
AhlI ACTAGT 1 cut(s) 191
AjnI CCWGG 1 cut(s) 742
AloI GAACNNNNNNTCC 2 cut(s) 404, 436
AluBI AGCT 7 cut(s) 139, 152, 168, 383, 524, 566, 703
AluI AGCT 7 cut(s) 139, 152, 168, 383, 524, 566, 703
Alw26I GTCTC 2 cut(s) 433, 620
AlwI GGATC 2 cut(s) 356, 493
AlwNI CAGNNNCTG 2 cut(s) 488, 743
AoxI GGCC 2 cut(s) 606, 740
ApeKI GCWGC 3 cut(s) 139, 236, 563
Asp718I GGTACC 1 cut(s) 332
AspS9I GGNCC 2 cut(s) 606, 740
AsuHPI GGTGA 2 cut(s) 31, 412
AsuII TTCGAA 1 cut(s) 536
BanI GGYRCC 1 cut(s) 332
BbvCI CCTCAGC 1 cut(s) 567
BbvI GCAGC 3 cut(s) 126, 223, 575
BccI CCATC 4 cut(s) 169, 352, 403, 684
BceAI ACGGC 1 cut(s) 486
BciT130I CCWGG 1 cut(s) 744
BclI TGATCA 2 cut(s) 340, 633
BcoDI GTCTC 2 cut(s) 433, 620
BcuI ACTAGT 1 cut(s) 191
BfaI CTAG 2 cut(s) 192, 203
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 3 cut(s) 140, 237, 564
BlpI GCTNAGC 1 cut(s) 462
BlsI GCNGC 3 cut(s) 141, 238, 565
Bme1390I CCNGG 1 cut(s) 744
BmgT120I GGNCC 2 cut(s) 606, 740
BmiI GGNNCC 2 cut(s) 88, 334
BmrFI CCNGG 1 cut(s) 744
BmsI GCATC 3 cut(s) 40, 253, 326
Bpu10I CCTNAGC 3 cut(s) 126, 269, 567
Bpu1102I GCTNAGC 1 cut(s) 462
Bpu14I TTCGAA 1 cut(s) 536
BsaAI YACGTR 1 cut(s) 511
BsaHI GRCGYC 1 cut(s) 308
BsaI GGTCTC 2 cut(s) 433, 620
BsaJI CCNNGG 5 cut(s) 240, 312, 324, 588, 609
BsaWI WCCGGW 2 cut(s) 145, 706
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 636
BseBI CCWGG 1 cut(s) 744
BseDI CCNNGG 5 cut(s) 240, 312, 324, 588, 609
BseGI GGATG 4 cut(s) 156, 268, 418, 577
BseLI CCNNNNNNNGG 2 cut(s) 274, 636
BseMII CTCAG 3 cut(s) 453, 536, 558
BseRI GAGGAG 2 cut(s) 626, 629
BseXI GCAGC 3 cut(s) 126, 223, 575
BsgI GTGCAG 2 cut(s) 81, 501
BshFI GGCC 2 cut(s) 608, 742
BshNI GGYRCC 1 cut(s) 332
BsiSI CCGG 2 cut(s) 146, 707
BslI CCNNNNNNNGG 2 cut(s) 274, 636
BsmAI GTCTC 2 cut(s) 433, 620
BsmI GAATGC 2 cut(s) 284, 544
BsnI GGCC 2 cut(s) 608, 742
Bso31I GGTCTC 2 cut(s) 433, 620
Bsp119I TTCGAA 1 cut(s) 536
Bsp143I GATC 5 cut(s) 340, 348, 485, 633, 651
Bsp1720I GCTNAGC 1 cut(s) 462
BspANI GGCC 2 cut(s) 608, 742
BspCNI CTCAG 3 cut(s) 454, 537, 559
BspLI GGNNCC 2 cut(s) 88, 334
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 2 cut(s) 356, 493
BspQI GCTCTTC 1 cut(s) 373
BspT104I TTCGAA 1 cut(s) 536
BspT107I GGYRCC 1 cut(s) 332
BspTNI GGTCTC 2 cut(s) 433, 620
BssECI CCNNGG 5 cut(s) 240, 312, 324, 588, 609
BssMI GATC 5 cut(s) 340, 348, 485, 633, 651
BssNI GRCGYC 1 cut(s) 308
BssT1I CCWWGG 3 cut(s) 240, 312, 588
Bst2UI CCWGG 1 cut(s) 744
Bst4CI ACNGT 3 cut(s) 328, 420, 690
Bst6I CTCTTC 1 cut(s) 373
BstACI GRCGYC 1 cut(s) 308
BstAPI GCANNNNNTGC 3 cut(s) 59, 479, 488
BstBAI YACGTR 1 cut(s) 511
BstBI TTCGAA 1 cut(s) 536
BstC8I GCNNGC 2 cut(s) 183, 475
BstDEI CTNAG 5 cut(s) 126, 269, 462, 545, 567
BstDSI CCRYGG 1 cut(s) 324
BstENI CCTNNNNNAGG 1 cut(s) 272
BstF5I GGATG 4 cut(s) 156, 268, 418, 577
BstKTI GATC 5 cut(s) 343, 351, 488, 636, 654
BstMAI GTCTC 2 cut(s) 433, 620
BstMBI GATC 5 cut(s) 340, 348, 485, 633, 651
BstMWI GCNNNNNNNGC 5 cut(s) 59, 68, 479, 488, 563
BstNI CCWGG 1 cut(s) 744
BstSCI CCNGG 1 cut(s) 742
BstSNI TACGTA 1 cut(s) 511
BstV1I GCAGC 3 cut(s) 126, 223, 575
BstX2I RGATCY 1 cut(s) 485
BstYI RGATCY 1 cut(s) 485
BsuRI GGCC 2 cut(s) 608, 742
BtgI CCRYGG 1 cut(s) 324
BtsCI GGATG 4 cut(s) 156, 268, 418, 577
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 2 cut(s) 484, 542
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 183, 475
CaiI CAGNNNCTG 2 cut(s) 488, 743
Cfr13I GGNCC 2 cut(s) 606, 740
Csp6I GTAC 1 cut(s) 333
CviAII CATG 2 cut(s) 373, 631
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 5 cut(s) 126, 269, 462, 545, 567
DpnI GATC 5 cut(s) 342, 350, 487, 635, 653
DpnII GATC 5 cut(s) 340, 348, 485, 633, 651
DraIII CACNNNGTG 2 cut(s) 59, 548
Eam1104I CTCTTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 373
Eco105I TACGTA 1 cut(s) 511
Eco130I CCWWGG 3 cut(s) 240, 312, 588
Eco31I GGTCTC 2 cut(s) 433, 620
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 742
EcoT14I CCWWGG 3 cut(s) 240, 312, 588
ErhI CCWWGG 3 cut(s) 240, 312, 588
FaeI CATG 2 cut(s) 376, 634
FaiI YATR 8 cut(s) 36, 95, 233, 300, 374, 494, 632, 754
FatI CATG 2 cut(s) 372, 630
FbaI TGATCA 2 cut(s) 340, 633
Fnu4HI GCNGC 3 cut(s) 140, 237, 564
FokI GGATG 4 cut(s) 143, 275, 425, 584
Fsp4HI GCNGC 3 cut(s) 140, 237, 564
FspBI CTAG 2 cut(s) 192, 203
GluI GCNGC 3 cut(s) 140, 237, 564
HaeIII GGCC 2 cut(s) 608, 742
HapII CCGG 2 cut(s) 146, 707
Hin1I GRCGYC 1 cut(s) 308
Hin1II CATG 2 cut(s) 376, 634
HinfI GANTC 1 cut(s) 73
HpaII CCGG 2 cut(s) 146, 707
HphI GGTGA 2 cut(s) 31, 412
Hpy188I TCNGA 3 cut(s) 345, 357, 433
Hpy188III TCNNGA 4 cut(s) 84, 203, 680, 693
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 202, 589
HpyCH4III ACNGT 3 cut(s) 328, 420, 690
HpyCH4IV ACGT 2 cut(s) 308, 510
HpyCH4V TGCA 8 cut(s) 4, 53, 62, 119, 482, 542, 557, 668
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 68, 479, 488, 563
HpyF3I CTNAG 5 cut(s) 126, 269, 462, 545, 567
HpySE526I ACGT 2 cut(s) 308, 510
Hsp92I GRCGYC 1 cut(s) 308
Hsp92II CATG 2 cut(s) 376, 634
KpnI GGTACC 1 cut(s) 336
Ksp22I TGATCA 2 cut(s) 340, 633
Kzo9I GATC 5 cut(s) 340, 348, 485, 633, 651
LguI GCTCTTC 1 cut(s) 373
LmnI GCTCC 2 cut(s) 86, 521
Lsp1109I GCAGC 3 cut(s) 126, 223, 575
LweI GCATC 3 cut(s) 40, 253, 326
MaeI CTAG 2 cut(s) 192, 203
MaeII ACGT 2 cut(s) 308, 510
MaeIII GTNAC 5 cut(s) 37, 109, 187, 245, 574
MalI GATC 5 cut(s) 342, 350, 487, 635, 653
MboI GATC 5 cut(s) 340, 348, 485, 633, 651
MboII GAAGA 3 cut(s) 68, 227, 390
MflI RGATCY 1 cut(s) 485
MluCI AATT 1 cut(s) 513
MnlI CCTC 5 cut(s) 339, 562, 604, 607, 636
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 681
MspA1I CMGCKG 2 cut(s) 139, 566
MspI CCGG 2 cut(s) 146, 707
MspR9I CCNGG 1 cut(s) 744
Mva1269I GAATGC 2 cut(s) 284, 544
MvaI CCWGG 1 cut(s) 744
MwoI GCNNNNNNNGC 5 cut(s) 59, 68, 479, 488, 563
NdeII GATC 5 cut(s) 340, 348, 485, 633, 651
NlaIII CATG 2 cut(s) 376, 634
NlaIV GGNNCC 2 cut(s) 88, 334
NmeAIII GCCGAG 1 cut(s) 634
NmuCI GTSAC 3 cut(s) 37, 109, 574
NspV TTCGAA 1 cut(s) 536
PaqCI CACCTGC 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 533
PctI GAATGC 2 cut(s) 284, 544
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 3 cut(s) 141, 238, 565
Ppu21I YACGTR 1 cut(s) 511
Psp6I CCWGG 1 cut(s) 742
PspGI CCWGG 1 cut(s) 742
PspN4I GGNNCC 2 cut(s) 88, 334
PspPI GGNCC 2 cut(s) 606, 740
PstNI CAGNNNCTG 2 cut(s) 488, 743
PsuI RGATCY 1 cut(s) 485
PvuII CAGCTG 2 cut(s) 139, 566
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
RseI CAYNNNNRTG 1 cut(s) 681
SapI GCTCTTC 1 cut(s) 373
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 3 cut(s) 140, 237, 564
Sau3AI GATC 5 cut(s) 340, 348, 485, 633, 651
Sau96I GGNCC 2 cut(s) 606, 740
ScrFI CCNGG 1 cut(s) 744
SfaNI GCATC 3 cut(s) 40, 253, 326
SfuI TTCGAA 1 cut(s) 536
SmiMI CAYNNNNRTG 1 cut(s) 681
SnaBI TACGTA 1 cut(s) 511
SpeI ACTAGT 1 cut(s) 191
Sse9I AATT 1 cut(s) 513
SspMI CTAG 2 cut(s) 192, 203
StyD4I CCNGG 1 cut(s) 742
StyI CCWWGG 3 cut(s) 240, 312, 588
TaaI ACNGT 3 cut(s) 328, 420, 690
TaiI ACGT 2 cut(s) 311, 513
TaqI TCGA 2 cut(s) 288, 536
TaqII GACCGA 1 cut(s) 341
TasI AATT 1 cut(s) 513
TfiI GAWTC 1 cut(s) 73
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 2 cut(s) 484, 549
TseFI GTSAC 3 cut(s) 37, 109, 574
TseI GCWGC 3 cut(s) 139, 236, 563
Tsp45I GTSAC 3 cut(s) 37, 109, 574
TspDTI ATGAA 3 cut(s) 408, 429, 699
TspRI CASTG 2 cut(s) 484, 549
XagI CCTNNNNNAGG 1 cut(s) 272
XbaI TCTAGA 1 cut(s) 202
XspI CTAG 2 cut(s) 192, 203
ZraI GACGTC 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.