AT1G69160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012045
Physical Location & Seq
Forward (+)
25999837 .. 26001614
1778 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G69160.1

Sequence Viewer

Length: 966 bp
ATGTCCATGAAAGGGATCTCATCAGCAGAGTCAGATAAGCTCTCTAGGAGAATATCTTTGACCCACAAGCGCAATTCCGAAGAGCTTGACGTGTTTGAAGCTGCCGTGTACTTCGGCTACAATGAAGCCTCCTCCGGTGACCATGGACATACACAAAAGTATGGCTATAACGCAGCGAGAGAGGAGAATCCGAGGAGATGGGGAATATTAGGAGGTGGAAGAAGAATCAGCTTGGATTTGCCTATTAGATGCTCAGAACAAGTGTACCATCTTCAACAAGATCATCATGAGAAGCACGAAGTTACAACAATCAAGGAGAGACTTGGTAACGTGAGACACAAGCAACCGAGTTCACCAGGTGGGAAAATCGCCAGCTTCTTGAACTCCTTGTTCCATCAAGCAGGTTCGAAGAAAAACAAATCAAAGTCAAAGTCAAAGACAAAGCCAACAGATCCAGAAGTGGAAGAGGAGATCCCCGGAGGAGGATGGATGAGGAGGAGGAGGAGAAGCAGTATCAGCCATTTCTTTAGCTCAAGCAGATCTACTTCAACAACCACCACTACCACGGCGTCATCATCTTCAAAATCTCTGATTTCCTCATCAAGCTCGGGTTTCAGAACTCCTCCTCCTTATTTGAACACTCCCACCAAGAACTACAAGCAGTTCTTGAACTACACTTCTGCCACAAAACAAGTGGGAGAAGAGGAAACTAAGACCAACAAAGAGTACTCTTGGCTGGACGAGAAACTCAAGGTGATGGAGAGCCTCTCGGAGAATCAGAGGATTTGGTCGGATGATGAAGATATCGATGATGATAGGAGAATAAAGAGAGAAGGAGAGGATGATGGAATGGAGAGTGATTCAAGTTCTGATCTCTTCGAGTTGCAAAATTACGAATTATCTCGTGGAGGCTTGCCAGTCTACGAGACTACCAATGTAGCTAACATCAACAAGACTCATATATAA

Protein Analysis

321

Amino Acids

36.33

Weight (kDa)

8.4

Isoelectric Point (pI)

67.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69160
fragaria_vesca FvH4_4g29630
malus_domestica MD13G1059400.v1.1 MD16G1058700.v1.1
prunus_persica Prupe.1G290400_v2.0.a1
pyrus_communis pycom13g05290 pycom16g05130
rosa_chinensis RchiOBHm_Chr4g0437861
rosa_laevigata RLG00000006406
rosa_multiflora Rmu_co8467433.1_g000001 Rmu_sc0008907.1_g000004
rosa_roxburghii Rroxscaffold_5G00379040
rosa_rugosa Rorug04G0304800
rosa_samantha Rh4AG356800 Rh4BG367600 Rh4CG381600 Rh4DG362100
rosa_wichuraiana Rw0G011590 Rw0G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 392
AccI GTMKAC 1 cut(s) 921
AclWI GGATC 3 cut(s) 23, 446, 466
AcyI GRCGYC 1 cut(s) 569
AdeI CACNNNGTG 1 cut(s) 359
AfaI GTAC 3 cut(s) 110, 266, 728
AfiI CCNNNNNNNGG 2 cut(s) 12, 482
AflIII ACRYGT 1 cut(s) 90
AgsI TTSAA 8 cut(s) 98, 275, 382, 549, 582, 637, 670, 864
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 355
AloI GAACNNNNNNTCC 2 cut(s) 610, 642
AluBI AGCT 8 cut(s) 40, 85, 101, 231, 375, 531, 606, 941
AluI AGCT 8 cut(s) 40, 85, 101, 231, 375, 531, 606, 941
Alw26I GTCTC 3 cut(s) 313, 328, 920
AlwI GGATC 3 cut(s) 23, 446, 466
Ama87I CYCGRG 1 cut(s) 607
ApeKI GCWGC 2 cut(s) 101, 173
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
AspLEI GCGC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 3 cut(s) 149, 345, 766
AsuII TTCGAA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 607
BaeI ACNNNNGTAYC 2 cut(s) 248, 281
BauI CACGAG 1 cut(s) 903
BbvI GCAGC 2 cut(s) 88, 185
BccI CCATC 6 cut(s) 192, 276, 402, 480, 751, 839
BceAI ACGGC 2 cut(s) 89, 582
BciT130I CCWGG 1 cut(s) 357
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 3 cut(s) 313, 328, 920
BfaI CTAG 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 392
BglII AGATCT 1 cut(s) 539
BisI GCNGC 2 cut(s) 102, 174
BlsI GCNGC 2 cut(s) 103, 175
BmcAI AGTACT 1 cut(s) 728
Bme1390I CCNGG 2 cut(s) 357, 477
BmeT110I CYCGRG 1 cut(s) 607
BmgBI CACGTC 1 cut(s) 91
BmrFI CCNGG 2 cut(s) 357, 477
BmsI GCATC 1 cut(s) 239
BplI GAGNNNNNCTC 2 cut(s) 752, 784
Bpu14I TTCGAA 1 cut(s) 407
BpuEI CTTGAG 2 cut(s) 517, 734
BpuMI CCSGG 1 cut(s) 477
Bsa29I ATCGAT 1 cut(s) 807
BsaHI GRCGYC 1 cut(s) 569
BsaJI CCNNGG 4 cut(s) 142, 191, 475, 564
BsaWI WCCGGW 1 cut(s) 134
BsaXI ACNNNNNCTCC 4 cut(s) 496, 526, 610, 640
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 482
Bse1I ACTGG 1 cut(s) 917
BseBI CCWGG 1 cut(s) 357
BseCI ATCGAT 1 cut(s) 807
BseDI CCNNGG 4 cut(s) 142, 191, 475, 564
BseGI GGATG 4 cut(s) 491, 495, 799, 847
BseLI CCNNNNNNNGG 2 cut(s) 12, 482
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 917
BseXI GCAGC 2 cut(s) 88, 185
BshVI ATCGAT 1 cut(s) 807
BsiHKCI CYCGRG 1 cut(s) 607
BsiSI CCGG 2 cut(s) 135, 477
BslI CCNNNNNNNGG 2 cut(s) 12, 482
BsmAI GTCTC 3 cut(s) 313, 328, 920
BsoBI CYCGRG 1 cut(s) 607
Bsp119I TTCGAA 1 cut(s) 407
Bsp143I GATC 6 cut(s) 15, 280, 451, 471, 539, 871
Bsp19I CCATGG 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 266
BspDI ATCGAT 1 cut(s) 807
BspHI TCATGA 1 cut(s) 286
BspMI ACCTGC 1 cut(s) 392
BspPI GGATC 3 cut(s) 23, 446, 466
BspQI GCTCTTC 1 cut(s) 75
BspT104I TTCGAA 1 cut(s) 407
BsrI ACTGG 1 cut(s) 917
BssECI CCNNGG 4 cut(s) 142, 191, 475, 564
BssMI GATC 6 cut(s) 15, 280, 451, 471, 539, 871
BssNI GRCGYC 1 cut(s) 569
BssSI CACGAG 1 cut(s) 903
BssT1I CCWWGG 1 cut(s) 142
Bst2BI CACGAG 1 cut(s) 903
Bst2UI CCWGG 1 cut(s) 357
Bst6I CTCTTC 4 cut(s) 75, 459, 696, 881
BstACI GRCGYC 1 cut(s) 569
BstBI TTCGAA 1 cut(s) 407
BstC8I GCNNGC 2 cut(s) 373, 914
BstDEI CTNAG 2 cut(s) 253, 711
BstDSI CCRYGG 2 cut(s) 142, 564
BstEII GGTNACC 1 cut(s) 137
BstF5I GGATG 4 cut(s) 491, 495, 799, 847
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 6 cut(s) 18, 283, 454, 474, 542, 874
BstMAI GTCTC 3 cut(s) 313, 328, 920
BstMBI GATC 6 cut(s) 15, 280, 451, 471, 539, 871
BstMWI GCNNNNNNNGC 1 cut(s) 516
BstNI CCWGG 1 cut(s) 357
BstPI GGTNACC 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 355, 475
BstV1I GCAGC 2 cut(s) 88, 185
BstX2I RGATCY 4 cut(s) 15, 451, 471, 539
BstYI RGATCY 4 cut(s) 15, 451, 471, 539
Bsu15I ATCGAT 1 cut(s) 807
BsuTUI ATCGAT 1 cut(s) 807
BtgI CCRYGG 2 cut(s) 142, 564
BtrI CACGTC 1 cut(s) 91
BtsCI GGATG 4 cut(s) 491, 495, 799, 847
BveI ACCTGC 1 cut(s) 392
Cac8I GCNNGC 2 cut(s) 373, 914
CciI TCATGA 1 cut(s) 286
CfoI GCGC 1 cut(s) 72
ClaI ATCGAT 1 cut(s) 807
CseI GACGC 1 cut(s) 558
CsiI ACCWGGT 1 cut(s) 355
Csp6I GTAC 3 cut(s) 109, 265, 727
CspCI CAANNNNNGTGG 2 cut(s) 675, 710
CviAII CATG 3 cut(s) 7, 143, 287
CviQI GTAC 3 cut(s) 109, 265, 727
DdeI CTNAG 2 cut(s) 253, 711
DpnI GATC 6 cut(s) 17, 282, 453, 473, 541, 873
DpnII GATC 6 cut(s) 15, 280, 451, 471, 539, 871
DraIII CACNNNGTG 1 cut(s) 359
Eam1104I CTCTTC 4 cut(s) 75, 459, 696, 881
EarI CTCTTC 4 cut(s) 75, 459, 696, 881
Eco130I CCWWGG 1 cut(s) 142
Eco32I GATATC 1 cut(s) 805
Eco88I CYCGRG 1 cut(s) 607
Eco91I GGTNACC 1 cut(s) 137
EcoO65I GGTNACC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 355
EcoRV GATATC 1 cut(s) 805
EcoT14I CCWWGG 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 3 cut(s) 10, 146, 290
FaiI YATR 9 cut(s) 8, 144, 150, 162, 168, 288, 960, 962, 964
FalI AAGNNNNNCTT 2 cut(s) 650, 682
FatI CATG 3 cut(s) 6, 142, 286
FblI GTMKAC 1 cut(s) 921
Fnu4HI GCNGC 2 cut(s) 102, 174
FokI GGATG 4 cut(s) 498, 502, 806, 854
Fsp4HI GCNGC 2 cut(s) 102, 174
FspBI CTAG 1 cut(s) 45
GlaI GCGC 1 cut(s) 71
GluI GCNGC 2 cut(s) 102, 174
HapII CCGG 2 cut(s) 135, 477
HgaI GACGC 1 cut(s) 558
HhaI GCGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 569
Hin1II CATG 3 cut(s) 10, 146, 290
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 6 cut(s) 29, 187, 225, 775, 860, 955
HpaII CCGG 2 cut(s) 135, 477
HphI GGTGA 3 cut(s) 149, 345, 766
Hpy166II GTNNAC 4 cut(s) 109, 265, 353, 922
Hpy188III TCNNGA 4 cut(s) 287, 379, 455, 667
Hpy8I GTNNAC 4 cut(s) 109, 265, 353, 922
HpyAV CCTTC 1 cut(s) 827
HpyCH4IV ACGT 2 cut(s) 90, 330
HpyCH4V TGCA 1 cut(s) 886
HpyF10VI GCNNNNNNNGC 1 cut(s) 516
HpyF3I CTNAG 2 cut(s) 253, 711
HpySE526I ACGT 2 cut(s) 90, 330
Hsp92I GRCGYC 1 cut(s) 569
Hsp92II CATG 3 cut(s) 10, 146, 290
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 6 cut(s) 15, 280, 451, 471, 539, 871
LguI GCTCTTC 1 cut(s) 75
LpnPI CCDG 9 cut(s) 148, 342, 369, 385, 387, 468, 490, 722, 930
Lsp1109I GCAGC 2 cut(s) 88, 185
LweI GCATC 1 cut(s) 239
MabI ACCWGGT 1 cut(s) 355
MaeI CTAG 1 cut(s) 45
MaeII ACGT 2 cut(s) 90, 330
MaeIII GTNAC 3 cut(s) 137, 301, 326
MalI GATC 6 cut(s) 17, 282, 453, 473, 541, 873
MboI GATC 6 cut(s) 15, 280, 451, 471, 539, 871
MflI RGATCY 4 cut(s) 15, 451, 471, 539
MluCI AATT 3 cut(s) 73, 889, 896
MlyI GAGTC 2 cut(s) 38, 949
MmeI TCCRAC 1 cut(s) 771
MspI CCGG 2 cut(s) 135, 477
MspR9I CCNGG 2 cut(s) 357, 477
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 516
NciI CCSGG 1 cut(s) 477
NcoI CCATGG 1 cut(s) 142
NdeII GATC 6 cut(s) 15, 280, 451, 471, 539, 871
NlaIII CATG 3 cut(s) 10, 146, 290
NmuCI GTSAC 1 cut(s) 137
NspV TTCGAA 1 cut(s) 407
PagI TCATGA 1 cut(s) 286
PciSI GCTCTTC 1 cut(s) 75
PfeI GAWTC 4 cut(s) 187, 225, 775, 860
PkrI GCNGC 2 cut(s) 103, 175
PleI GAGTC 2 cut(s) 37, 949
PpsI GAGTC 2 cut(s) 37, 949
Psp6I CCWGG 1 cut(s) 355
PspEI GGTNACC 1 cut(s) 137
PspGI CCWGG 1 cut(s) 355
PsuI RGATCY 4 cut(s) 15, 451, 471, 539
RsaI GTAC 3 cut(s) 110, 266, 728
RsaNI GTAC 3 cut(s) 109, 265, 727
SapI GCTCTTC 1 cut(s) 75
SatI GCNGC 2 cut(s) 102, 174
Sau3AI GATC 6 cut(s) 15, 280, 451, 471, 539, 871
ScaI AGTACT 1 cut(s) 728
SchI GAGTC 2 cut(s) 38, 949
ScrFI CCNGG 2 cut(s) 357, 477
SexAI ACCWGGT 1 cut(s) 355
SfaNI GCATC 1 cut(s) 239
SfuI TTCGAA 1 cut(s) 407
SmlI CTYRAG 2 cut(s) 532, 749
SmoI CTYRAG 2 cut(s) 532, 749
Sse9I AATT 3 cut(s) 73, 889, 896
SspI AATATT 1 cut(s) 207
SspMI CTAG 1 cut(s) 45
StyD4I CCNGG 2 cut(s) 355, 475
StyI CCWWGG 1 cut(s) 142
TaiI ACGT 2 cut(s) 93, 333
TaqI TCGA 3 cut(s) 407, 807, 879
TasI AATT 3 cut(s) 73, 889, 896
TatI WGTACW 2 cut(s) 108, 726
TfiI GAWTC 4 cut(s) 187, 225, 775, 860
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 2 cut(s) 101, 173
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 3 cut(s) 23, 138, 813
XcmI CCANNNNNNNNNTGG 1 cut(s) 691
XmiI GTMKAC 1 cut(s) 921
XspI CTAG 1 cut(s) 45
ZrmI AGTACT 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.