Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0012045

Physical Location & Seq

Genomic Coordinates Reverse (-)

6837980 .. 6838960

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006406

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTCATCCATTGCAGGACTTGCAGACCCGGGTGAGAAGGTACACAAGAAATCCTTCCACCGGAGGAACGACTCCGGCGAGCTGGACGTGTTCGAAGCTGCACGGTATTTCTCTGGCTACAACGAAGCTCCGACGATGATGATGAAAGAAGATAGATCATCATGGAGAGGAGGCAGAATTAGTCTTGACATGCCAATCCGAAACGTGCTTGATCAACAGCTTCATCATCATCATCACCACCACCATGCGGTGGATCAGAAGCAGAATATGAAAGAAAAGATCAAATACAAGCAGCCAAGCTCTCCAGGTGGGAGACTAGCTAGCTTCTTGAATTCACTTTTTAACCAATCAGGTTCCAAGAAGAAGAAATCAAAATCCAGTACCACGCAGTCTATGAAAGACGAGGAGGAGAGTCCAGGTGGGAGGAGAAGAAGAAGAAGCAGCATTAGCCATTTTCGAAGCTCGAGTACTACCATCACCACCGATGCGAAGTCCATATACTCATCTTCAAGCTCTGGCTTCAGAACACCTCCTCCTTACGGTGCACAAATCGCAACCGCCAAGAGCTACAAAGATTGGAGAAGTTACTCAGATCACAAACCGCAACAGCAAGTGGTGTCCAATTTGTCCAAGCATAGTGTTCTGTCACATGCAAAATCTACAGTCTTGGATGAGAAAGTTTCATCAAACAGAGAGCTAAACTGGTTGGACGAGAAATTCAAATACAACAATCGGCTGTCGTTGTCGGAGAAGTACAAGAATTCAATAGATCAGGATCACAACAAGGGATTGTTGAAGAGGCTGAGTGAGGTGGTTGATGATGATGATGATGGTGCAGAAAGTGATTCGAGCTCCGATCTTTTCGAGTTGCAGAACTATGACTTGGGGGGCTACTACTCAAGCGGTTTGCCTGTGTATGAAACTACCAACGTGGATAGCATCAAGAATATCAGAGGAACCCCGATTGCAAATGCCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009914 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

36.78

Weight (kDa)

9.3

Isoelectric Point (pI)

56.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69160
fragaria_vesca	FvH4_4g29630
malus_domestica	MD13G1059400.v1.1 MD16G1058700.v1.1
prunus_persica	Prupe.1G290400_v2.0.a1
pyrus_communis	pycom13g05290 pycom16g05130
rosa_chinensis	RchiOBHm_Chr4g0437861
rosa_laevigata	RLG00000006406
rosa_multiflora	Rmu_co8467433.1_g000001 Rmu_sc0008907.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379040
rosa_rugosa	Rorug04G0304800
rosa_samantha	Rh4AG356800 Rh4BG367600 Rh4CG381600 Rh4DG362100
rosa_wichuraiana	Rw0G011590 Rw0G016090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	250
AciI	CCGC	4 cut(s)	248, 558, 602, 903
AclWI	GGATC	2 cut(s)	261, 783
AcsI	RAATTY	3 cut(s)	331, 716, 760
AcuI	CTGAAG	1 cut(s)	505
AfaI	GTAC	4 cut(s)	42, 382, 469, 755
AfiI	CCNNNNNNNGG	4 cut(s)	60, 247, 250, 539
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	5 cut(s)	331, 510, 721, 765, 796
AjiI	CACGTC	1 cut(s)	88
AjnI	CCWGG	2 cut(s)	304, 415
AjuI	GAANNNNNNNTTGG	2 cut(s)	866, 898
AloI	GAACNNNNNNTCC	2 cut(s)	517, 549
Alw21I	GWGCWC	2 cut(s)	547, 854
Alw26I	GTCTC	1 cut(s)	307
Alw44I	GTGCAC	1 cut(s)	543
AlwI	GGATC	2 cut(s)	261, 783
Ama87I	CYCGRG	2 cut(s)	28, 463
ApaLI	GTGCAC	1 cut(s)	543
ApeKI	GCWGC	3 cut(s)	98, 292, 441
ApoI	RAATTY	3 cut(s)	331, 716, 760
Asp700I	GAANNNNTTC	1 cut(s)	53
AsuC2I	CCSGG	2 cut(s)	29, 30
AsuHPI	GGTGA	3 cut(s)	44, 227, 469
AsuII	TTCGAA	2 cut(s)	93, 457
AsuNHI	GCTAGC	1 cut(s)	320
AvaI	CYCGRG	2 cut(s)	28, 463
BaeGI	GKGCMC	1 cut(s)	547
BanII	GRGCYC	1 cut(s)	854
BarI	GAAGNNNNNNTAC	4 cut(s)	451, 482, 483, 514
Bbv12I	GWGCWC	2 cut(s)	547, 854
BbvI	GCAGC	3 cut(s)	85, 304, 453
BccI	CCATC	2 cut(s)	482, 824
BciT130I	CCWGG	2 cut(s)	306, 417
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	2 cut(s)	29, 30
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	2 cut(s)	317, 321
BfmI	CTRYAG	1 cut(s)	660
BisI	GCNGC	3 cut(s)	99, 293, 442
BlsI	GCNGC	3 cut(s)	100, 294, 443
BmcAI	AGTACT	1 cut(s)	469
Bme1390I	CCNGG	4 cut(s)	29, 30, 306, 417
BmeT110I	CYCGRG	2 cut(s)	28, 463
BmgBI	CACGTC	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	355, 958
BmrFI	CCNGG	4 cut(s)	29, 30, 306, 417
BmsI	GCATC	2 cut(s)	475, 948
BmtI	GCTAGC	1 cut(s)	324
BpmI	CTGGAG	1 cut(s)	288
Bpu14I	TTCGAA	2 cut(s)	93, 457
BpuEI	CTTGAG	1 cut(s)	883
BpuMI	CCSGG	2 cut(s)	29, 30
BsaBI	GATNNNNATC	1 cut(s)	774
BsaJI	CCNNGG	1 cut(s)	28
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	517, 547
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 247, 250, 539
Bse1I	ACTGG	2 cut(s)	378, 707
Bse3DI	GCAATG	1 cut(s)	9
Bse8I	GATNNNNATC	1 cut(s)	774
BseBI	CCWGG	2 cut(s)	306, 417
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	2 cut(s)	5, 676
BseJI	GATNNNNATC	1 cut(s)	774
BseLI	CCNNNNNNNGG	4 cut(s)	60, 247, 250, 539
BseMI	GCAATG	1 cut(s)	9
BseMII	CTCAG	2 cut(s)	603, 794
BseNI	ACTGG	2 cut(s)	378, 707
BseRI	GAGGAG	5 cut(s)	183, 419, 422, 439, 522
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	3 cut(s)	85, 304, 453
BsgI	GTGCAG	2 cut(s)	84, 855
BsiHKAI	GWGCWC	2 cut(s)	547, 854
BsiHKCI	CYCGRG	2 cut(s)	28, 463
BsiSI	CCGG	3 cut(s)	29, 61, 75
BslI	CCNNNNNNNGG	4 cut(s)	60, 247, 250, 539
BsmAI	GTCTC	1 cut(s)	307
BsoBI	CYCGRG	2 cut(s)	28, 463
Bsp119I	TTCGAA	2 cut(s)	93, 457
Bsp1286I	GDGCHC	2 cut(s)	547, 854
Bsp143I	GATC	8 cut(s)	155, 211, 253, 279, 592, 769, 775, 856
BspACI	CCGC	4 cut(s)	248, 558, 602, 903
BspCNI	CTCAG	2 cut(s)	602, 795
BspLI	GGNNCC	2 cut(s)	355, 958
BspOI	GCTAGC	1 cut(s)	324
BspPI	GGATC	2 cut(s)	261, 783
BspT104I	TTCGAA	2 cut(s)	93, 457
BsrDI	GCAATG	1 cut(s)	9
BsrI	ACTGG	2 cut(s)	378, 707
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	8 cut(s)	155, 211, 253, 279, 592, 769, 775, 856
Bst2UI	CCWGG	2 cut(s)	306, 417
Bst4CI	ACNGT	3 cut(s)	105, 542, 664
Bst6I	CTCTTC	1 cut(s)	791
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBI	TTCGAA	2 cut(s)	93, 457
BstC8I	GCNNGC	2 cut(s)	80, 322
BstDEI	CTNAG	2 cut(s)	589, 803
BstF5I	GGATG	2 cut(s)	5, 676
BstKTI	GATC	8 cut(s)	158, 214, 256, 282, 595, 772, 778, 859
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	8 cut(s)	155, 211, 253, 279, 592, 769, 775, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 447, 551
BstNI	CCWGG	2 cut(s)	306, 417
BstNSI	RCATGY	2 cut(s)	193, 653
BstSCI	CCNGG	4 cut(s)	27, 28, 304, 415
BstSFI	CTRYAG	1 cut(s)	660
BstSLI	GKGCMC	1 cut(s)	547
BstV1I	GCAGC	3 cut(s)	85, 304, 453
BtrI	CACGTC	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	5, 676
Cac8I	GCNNGC	2 cut(s)	80, 322
Cfr9I	CCCGGG	1 cut(s)	28
Csp6I	GTAC	4 cut(s)	41, 381, 468, 754
CviAII	CATG	4 cut(s)	162, 190, 245, 650
CviQI	GTAC	4 cut(s)	41, 381, 468, 754
DdeI	CTNAG	2 cut(s)	589, 803
DpnI	GATC	8 cut(s)	157, 213, 255, 281, 594, 771, 777, 858
DpnII	GATC	8 cut(s)	155, 211, 253, 279, 592, 769, 775, 856
Eam1104I	CTCTTC	1 cut(s)	791
EarI	CTCTTC	1 cut(s)	791
Ecl136II	GAGCTC	1 cut(s)	852
Eco24I	GRGCYC	1 cut(s)	854
Eco53kI	GAGCTC	1 cut(s)	852
Eco57I	CTGAAG	1 cut(s)	505
Eco88I	CYCGRG	2 cut(s)	28, 463
EcoICRI	GAGCTC	1 cut(s)	852
EcoRI	GAATTC	2 cut(s)	331, 760
EcoRII	CCWGG	2 cut(s)	304, 415
EcoT38I	GRGCYC	1 cut(s)	854
FaeI	CATG	4 cut(s)	165, 193, 248, 653
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	4 cut(s)	161, 189, 244, 649
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	3 cut(s)	99, 293, 442
FokI	GGATG	1 cut(s)	683
FriOI	GRGCYC	1 cut(s)	854
Fsp4HI	GCNGC	3 cut(s)	99, 293, 442
FspBI	CTAG	2 cut(s)	317, 321
GluI	GCNGC	3 cut(s)	99, 293, 442
GsuI	CTGGAG	1 cut(s)	288
HapII	CCGG	3 cut(s)	29, 61, 75
Hin1II	CATG	4 cut(s)	165, 193, 248, 653
HinfI	GANTC	3 cut(s)	71, 412, 845
HpaII	CCGG	3 cut(s)	29, 61, 75
HphI	GGTGA	3 cut(s)	44, 227, 469
Hpy166II	GTNNAC	2 cut(s)	43, 545
Hpy188I	TCNGA	8 cut(s)	132, 200, 258, 524, 592, 748, 856, 953
Hpy188III	TCNNGA	4 cut(s)	185, 328, 773, 943
Hpy8I	GTNNAC	2 cut(s)	43, 545
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	31, 64
HpyCH4III	ACNGT	3 cut(s)	105, 542, 664
HpyCH4IV	ACGT	3 cut(s)	87, 204, 930
HpyCH4V	TGCA	8 cut(s)	14, 23, 101, 545, 653, 836, 871, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 447, 551
HpyF3I	CTNAG	2 cut(s)	589, 803
HpySE526I	ACGT	3 cut(s)	87, 204, 930
Hsp92II	CATG	4 cut(s)	165, 193, 248, 653
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	8 cut(s)	155, 211, 253, 279, 592, 769, 775, 856
LmnI	GCTCC	2 cut(s)	133, 857
Lsp1109I	GCAGC	3 cut(s)	85, 304, 453
LweI	GCATC	2 cut(s)	475, 948
MaeI	CTAG	2 cut(s)	317, 321
MaeII	ACGT	3 cut(s)	87, 204, 930
MaeIII	GTNAC	2 cut(s)	584, 645
MalI	GATC	8 cut(s)	157, 213, 255, 281, 594, 771, 777, 858
MboI	GATC	8 cut(s)	155, 211, 253, 279, 592, 769, 775, 856
MboII	GAAGA	8 cut(s)	161, 373, 376, 441, 444, 447, 498, 808
MhlI	GDGCHC	2 cut(s)	547, 854
MluCI	AATT	5 cut(s)	177, 331, 622, 716, 760
MlyI	GAGTC	2 cut(s)	65, 421
MmeI	TCCRAC	3 cut(s)	155, 687, 726
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	3 cut(s)	29, 61, 75
MspR9I	CCNGG	4 cut(s)	29, 30, 306, 417
MvaI	CCWGG	2 cut(s)	306, 417
MwoI	GCNNNNNNNGC	3 cut(s)	20, 447, 551
NciI	CCSGG	2 cut(s)	29, 30
NdeII	GATC	8 cut(s)	155, 211, 253, 279, 592, 769, 775, 856
NheI	GCTAGC	1 cut(s)	320
NlaIII	CATG	4 cut(s)	165, 193, 248, 653
NlaIV	GGNNCC	2 cut(s)	355, 958
NmuCI	GTSAC	1 cut(s)	645
NspI	RCATGY	2 cut(s)	193, 653
NspV	TTCGAA	2 cut(s)	93, 457
PaeR7I	CTCGAG	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	845
PflMI	CCANNNNNTGG	1 cut(s)	250
PkrI	GCNGC	3 cut(s)	100, 294, 443
PleI	GAGTC	2 cut(s)	65, 420
PpsI	GAGTC	2 cut(s)	65, 420
Psp124BI	GAGCTC	1 cut(s)	854
Psp6I	CCWGG	2 cut(s)	304, 415
PspGI	CCWGG	2 cut(s)	304, 415
PspN4I	GGNNCC	2 cut(s)	355, 958
PspXI	VCTCGAGB	1 cut(s)	463
RsaI	GTAC	4 cut(s)	42, 382, 469, 755
RsaNI	GTAC	4 cut(s)	41, 381, 468, 754
RseI	CAYNNNNRTG	1 cut(s)	243
SacI	GAGCTC	1 cut(s)	854
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	99, 293, 442
Sau3AI	GATC	8 cut(s)	155, 211, 253, 279, 592, 769, 775, 856
ScaI	AGTACT	1 cut(s)	469
SchI	GAGTC	2 cut(s)	65, 421
ScrFI	CCNGG	4 cut(s)	29, 30, 306, 417
SduI	GDGCHC	2 cut(s)	547, 854
SfaNI	GCATC	2 cut(s)	475, 948
SfcI	CTRYAG	1 cut(s)	660
Sfr274I	CTCGAG	1 cut(s)	463
SfuI	TTCGAA	2 cut(s)	93, 457
SlaI	CTCGAG	1 cut(s)	463
SmaI	CCCGGG	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	2 cut(s)	463, 898
SmoI	CTYRAG	2 cut(s)	463, 898
Sse9I	AATT	5 cut(s)	177, 331, 622, 716, 760
SsiI	CCGC	4 cut(s)	248, 558, 602, 903
SspMI	CTAG	2 cut(s)	317, 321
SstI	GAGCTC	1 cut(s)	854
StyD4I	CCNGG	4 cut(s)	27, 28, 304, 415
TaaI	ACNGT	3 cut(s)	105, 542, 664
TaiI	ACGT	3 cut(s)	90, 207, 933
TaqI	TCGA	5 cut(s)	93, 457, 464, 848, 864
TasI	AATT	5 cut(s)	177, 331, 622, 716, 760
TatI	WGTACW	2 cut(s)	467, 753
TfiI	GAWTC	1 cut(s)	845
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	645
TseI	GCWGC	3 cut(s)	98, 292, 441
Tsp45I	GTSAC	1 cut(s)	645
TspDTI	ATGAA	6 cut(s)	158, 212, 284, 410, 672, 933
TspMI	CCCGGG	1 cut(s)	28
Van91I	CCANNNNNTGG	1 cut(s)	250
VneI	GTGCAC	1 cut(s)	543
XapI	RAATTY	3 cut(s)	331, 716, 760
XceI	RCATGY	2 cut(s)	193, 653
XhoI	CTCGAG	1 cut(s)	463
XmaI	CCCGGG	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	2 cut(s)	317, 321
ZrmI	AGTACT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.