Rh4AG356800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0012045
Physical Location & Seq
Forward (+)
66720117 .. 66721256
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG356800.1

Sequence Viewer

Length: 984 bp
ATGTCATCCATTGCAGGACCTGCAGACCCGGGTGAGAAGGTACACAAGAAATCCTTCCACCGGAGGAACGACTCCGGGGAGCTGGACGTGTTCGAAGCTGCACGGTATTTCTCTGGCTACAACGAAGCTCCGACGATGATGATGAAAGAAGATAGATCGTCATGGAGAGGAGGCAGAATTAGTCTTGACATGCCAATCCGAAACGTGCTTGATCAACAGCTTCATCATCATCATCATCATCACCATGCGGTGGATCAGAAGCAGAATGTGAAAGAAAAGATCAAATACAAGCAGCCAAGCTCTCCAGGTGGGAGACTAGCTAGCTTCTTGAATTCACTTTTCAATCAATCAGGTACCAAGAAGAAGAAATCAAAATCCAGTACCACGCAGTCTATGAAAGACGAGGAGGAGAGTCCAGGTGGGAGGAGAAGAAGAAGAAGCAGCATTAGCCATTTTCGAAGCTCGAGTACTACTACCACCACCGATGCCAAGTCCATATACTCATCTTCAAGCTCTGGCTTCAGAACACCTCCTCCTTACGGTGCACAAATCGCAACGGCCAAGAGCTACAAAGATTGGAGAAGTTACTCAGATCACAAGCCGCAGCAGCAAGTGGTGTCCAATTTGTCCAAGCATAGTGTTCTGTCACATGCAAAATCTACACTCTTGGATGAGAAAGTTTCATCAAACAGAGAGCTAAACTGGTTGGACGAGAAATTCAAATACAACAACCGGCTGTCGTTGTCGGAGAAGTACAAGAATTCAATAGATCAGGATCACAACAAGGGATTGTTGAAGAGGCTGAGTGAGGTGGTTGATGATGATGATGATGATGGTGCAGAAAGTGATTCGAGCTCCGATCTTTTCGAGTTGCAGAACTATGACTTGGGGGGCTACTACTCAAGCGGTTTGCCTGTGTATGAAACTACCAACGTGGATAGCATCAAGAATATCAGAGGAACCCCGATTGCAAATGCCTCATAG

Protein Analysis

327

Amino Acids

36.87

Weight (kDa)

9.22

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69160
fragaria_vesca FvH4_4g29630
malus_domestica MD13G1059400.v1.1 MD16G1058700.v1.1
prunus_persica Prupe.1G290400_v2.0.a1
pyrus_communis pycom13g05290 pycom16g05130
rosa_chinensis RchiOBHm_Chr4g0437861
rosa_laevigata RLG00000006406
rosa_multiflora Rmu_co8467433.1_g000001 Rmu_sc0008907.1_g000004
rosa_roxburghii Rroxscaffold_5G00379040
rosa_rugosa Rorug04G0304800
rosa_samantha Rh4AG356800 Rh4BG367600 Rh4CG381600 Rh4DG362100
rosa_wichuraiana Rw0G011590 Rw0G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 28
Acc65I GGTACC 1 cut(s) 353
AccB1I GGYRCC 1 cut(s) 353
AccB7I CCANNNNNTGG 1 cut(s) 250
AciI CCGC 3 cut(s) 248, 602, 906
AclWI GGATC 2 cut(s) 261, 783
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 3 cut(s) 331, 716, 760
AcuI CTGAAG 1 cut(s) 505
AfaI GTAC 5 cut(s) 42, 355, 382, 469, 755
AfiI CCNNNNNNNGG 3 cut(s) 60, 250, 539
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 6 cut(s) 331, 343, 510, 721, 765, 796
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 2 cut(s) 304, 415
AjuI GAANNNNNNNTTGG 2 cut(s) 869, 901
AloI GAACNNNNNNTCC 2 cut(s) 517, 549
Alw21I GWGCWC 2 cut(s) 547, 857
Alw26I GTCTC 1 cut(s) 307
Alw44I GTGCAC 1 cut(s) 543
AlwI GGATC 2 cut(s) 261, 783
AlwNI CAGNNNCTG 1 cut(s) 20
Ama87I CYCGRG 2 cut(s) 28, 463
AoxI GGCC 1 cut(s) 558
ApaLI GTGCAC 1 cut(s) 543
ApeKI GCWGC 5 cut(s) 98, 292, 441, 604, 607
ApoI RAATTY 3 cut(s) 331, 716, 760
Asp700I GAANNNNTTC 1 cut(s) 53
Asp718I GGTACC 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 3 cut(s) 29, 30, 76
AsuHPI GGTGA 2 cut(s) 44, 233
AsuII TTCGAA 2 cut(s) 93, 457
AsuNHI GCTAGC 1 cut(s) 320
AvaI CYCGRG 2 cut(s) 28, 463
AvaII GGWCC 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 547
BanI GGYRCC 1 cut(s) 353
BanII GRGCYC 1 cut(s) 857
BarI GAAGNNNNNNTAC 2 cut(s) 451, 483
Bbv12I GWGCWC 2 cut(s) 547, 857
BbvI GCAGC 5 cut(s) 85, 304, 453, 616, 619
BccI CCATC 1 cut(s) 827
BceAI ACGGC 1 cut(s) 573
BciT130I CCWGG 2 cut(s) 306, 417
BclI TGATCA 1 cut(s) 211
BcnI CCSGG 3 cut(s) 29, 30, 76
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 2 cut(s) 317, 321
BfmI CTRYAG 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 28
BisI GCNGC 6 cut(s) 99, 293, 442, 602, 605, 608
BlsI GCNGC 6 cut(s) 100, 294, 443, 603, 606, 609
BmcAI AGTACT 1 cut(s) 469
Bme1390I CCNGG 5 cut(s) 29, 30, 76, 306, 417
Bme18I GGWCC 1 cut(s) 17
BmeT110I CYCGRG 2 cut(s) 28, 463
BmgBI CACGTC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 2 cut(s) 355, 961
BmrFI CCNGG 5 cut(s) 29, 30, 76, 306, 417
BmsI GCATC 2 cut(s) 475, 951
BmtI GCTAGC 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 288
Bpu14I TTCGAA 2 cut(s) 93, 457
BpuEI CTTGAG 1 cut(s) 886
BpuMI CCSGG 3 cut(s) 29, 30, 76
BsaBI GATNNNNATC 1 cut(s) 774
BsaJI CCNNGG 2 cut(s) 28, 75
BsaWI WCCGGW 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 517, 547
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 250, 539
Bse118I RCCGGY 1 cut(s) 732
Bse1I ACTGG 2 cut(s) 378, 707
Bse3DI GCAATG 1 cut(s) 9
Bse8I GATNNNNATC 1 cut(s) 774
BseBI CCWGG 2 cut(s) 306, 417
BseDI CCNNGG 2 cut(s) 28, 75
BseGI GGATG 2 cut(s) 5, 676
BseJI GATNNNNATC 1 cut(s) 774
BseLI CCNNNNNNNGG 3 cut(s) 60, 250, 539
BseMI GCAATG 1 cut(s) 9
BseMII CTCAG 2 cut(s) 603, 794
BseNI ACTGG 2 cut(s) 378, 707
BseRI GAGGAG 5 cut(s) 183, 419, 422, 439, 522
BseSI GKGCMC 1 cut(s) 547
BseXI GCAGC 5 cut(s) 85, 304, 453, 616, 619
BsgI GTGCAG 2 cut(s) 84, 858
BshFI GGCC 1 cut(s) 560
BshNI GGYRCC 1 cut(s) 353
BsiHKAI GWGCWC 2 cut(s) 547, 857
BsiHKCI CYCGRG 2 cut(s) 28, 463
BsiSI CCGG 4 cut(s) 29, 61, 75, 733
BslI CCNNNNNNNGG 3 cut(s) 60, 250, 539
BsmAI GTCTC 1 cut(s) 307
BsnI GGCC 1 cut(s) 560
BsoBI CYCGRG 2 cut(s) 28, 463
Bsp119I TTCGAA 2 cut(s) 93, 457
Bsp1286I GDGCHC 2 cut(s) 547, 857
Bsp143I GATC 8 cut(s) 155, 211, 253, 279, 592, 769, 775, 859
BspACI CCGC 3 cut(s) 248, 602, 906
BspANI GGCC 1 cut(s) 560
BspCNI CTCAG 2 cut(s) 602, 795
BspLI GGNNCC 2 cut(s) 355, 961
BspMAI CTGCAG 1 cut(s) 25
BspMI ACCTGC 1 cut(s) 28
BspOI GCTAGC 1 cut(s) 324
BspPI GGATC 2 cut(s) 261, 783
BspT104I TTCGAA 2 cut(s) 93, 457
BspT107I GGYRCC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 9
BsrFI RCCGGY 1 cut(s) 732
BsrI ACTGG 2 cut(s) 378, 707
BssAI RCCGGY 1 cut(s) 732
BssECI CCNNGG 2 cut(s) 28, 75
BssMI GATC 8 cut(s) 155, 211, 253, 279, 592, 769, 775, 859
Bst2UI CCWGG 2 cut(s) 306, 417
Bst4CI ACNGT 2 cut(s) 105, 542
Bst6I CTCTTC 1 cut(s) 791
BstAPI GCANNNNNTGC 1 cut(s) 20
BstBI TTCGAA 2 cut(s) 93, 457
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 2 cut(s) 589, 803
BstF5I GGATG 2 cut(s) 5, 676
BstKTI GATC 8 cut(s) 158, 214, 256, 282, 595, 772, 778, 862
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 8 cut(s) 155, 211, 253, 279, 592, 769, 775, 859
BstMWI GCNNNNNNNGC 4 cut(s) 20, 447, 551, 607
BstNI CCWGG 2 cut(s) 306, 417
BstNSI RCATGY 2 cut(s) 193, 653
BstSCI CCNGG 5 cut(s) 27, 28, 74, 304, 415
BstSFI CTRYAG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 547
BstV1I GCAGC 5 cut(s) 85, 304, 453, 616, 619
BsuRI GGCC 1 cut(s) 560
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 5, 676
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 322
CaiI CAGNNNCTG 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 732
Cfr13I GGNCC 1 cut(s) 17
Cfr9I CCCGGG 1 cut(s) 28
Csp6I GTAC 5 cut(s) 41, 354, 381, 468, 754
CviAII CATG 4 cut(s) 162, 190, 245, 650
CviQI GTAC 5 cut(s) 41, 354, 381, 468, 754
DdeI CTNAG 2 cut(s) 589, 803
DpnI GATC 8 cut(s) 157, 213, 255, 281, 594, 771, 777, 861
DpnII GATC 8 cut(s) 155, 211, 253, 279, 592, 769, 775, 859
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 791
EarI CTCTTC 1 cut(s) 791
Ecl136II GAGCTC 1 cut(s) 855
Eco24I GRGCYC 1 cut(s) 857
Eco47I GGWCC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 855
Eco57I CTGAAG 1 cut(s) 505
Eco88I CYCGRG 2 cut(s) 28, 463
EcoICRI GAGCTC 1 cut(s) 855
EcoO109I RGGNCCY 1 cut(s) 17
EcoRI GAATTC 2 cut(s) 331, 760
EcoRII CCWGG 2 cut(s) 304, 415
EcoT38I GRGCYC 1 cut(s) 857
FaeI CATG 4 cut(s) 165, 193, 248, 653
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FatI CATG 4 cut(s) 161, 189, 244, 649
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 6 cut(s) 99, 293, 442, 602, 605, 608
FokI GGATG 1 cut(s) 683
FriOI GRGCYC 1 cut(s) 857
Fsp4HI GCNGC 6 cut(s) 99, 293, 442, 602, 605, 608
FspBI CTAG 2 cut(s) 317, 321
GluI GCNGC 6 cut(s) 99, 293, 442, 602, 605, 608
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 1 cut(s) 560
HapII CCGG 4 cut(s) 29, 61, 75, 733
Hin1II CATG 4 cut(s) 165, 193, 248, 653
HinfI GANTC 3 cut(s) 71, 412, 848
HpaII CCGG 4 cut(s) 29, 61, 75, 733
HphI GGTGA 2 cut(s) 44, 233
Hpy166II GTNNAC 2 cut(s) 43, 545
Hpy188I TCNGA 8 cut(s) 132, 200, 258, 524, 592, 748, 859, 956
Hpy188III TCNNGA 4 cut(s) 185, 328, 773, 946
Hpy8I GTNNAC 2 cut(s) 43, 545
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 2 cut(s) 31, 64
HpyCH4III ACNGT 2 cut(s) 105, 542
HpyCH4IV ACGT 3 cut(s) 87, 204, 933
HpyCH4V TGCA 8 cut(s) 14, 23, 101, 545, 653, 839, 874, 971
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 447, 551, 607
HpyF3I CTNAG 2 cut(s) 589, 803
HpySE526I ACGT 3 cut(s) 87, 204, 933
Hsp92II CATG 4 cut(s) 165, 193, 248, 653
KpnI GGTACC 1 cut(s) 357
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 8 cut(s) 155, 211, 253, 279, 592, 769, 775, 859
LmnI GCTCC 3 cut(s) 79, 133, 860
Lsp1109I GCAGC 5 cut(s) 85, 304, 453, 616, 619
LweI GCATC 2 cut(s) 475, 951
MaeI CTAG 2 cut(s) 317, 321
MaeII ACGT 3 cut(s) 87, 204, 933
MaeIII GTNAC 2 cut(s) 584, 645
MalI GATC 8 cut(s) 157, 213, 255, 281, 594, 771, 777, 861
MboI GATC 8 cut(s) 155, 211, 253, 279, 592, 769, 775, 859
MboII GAAGA 8 cut(s) 161, 373, 376, 441, 444, 447, 498, 808
MhlI GDGCHC 2 cut(s) 547, 857
MluCI AATT 5 cut(s) 177, 331, 622, 716, 760
MlyI GAGTC 2 cut(s) 65, 421
MmeI TCCRAC 3 cut(s) 155, 687, 726
MroXI GAANNNNTTC 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 243
MspI CCGG 4 cut(s) 29, 61, 75, 733
MspR9I CCNGG 5 cut(s) 29, 30, 76, 306, 417
MvaI CCWGG 2 cut(s) 306, 417
MwoI GCNNNNNNNGC 4 cut(s) 20, 447, 551, 607
NciI CCSGG 3 cut(s) 29, 30, 76
NdeII GATC 8 cut(s) 155, 211, 253, 279, 592, 769, 775, 859
NheI GCTAGC 1 cut(s) 320
NlaIII CATG 4 cut(s) 165, 193, 248, 653
NlaIV GGNNCC 2 cut(s) 355, 961
NmuCI GTSAC 1 cut(s) 645
NspI RCATGY 2 cut(s) 193, 653
NspV TTCGAA 2 cut(s) 93, 457
PaeR7I CTCGAG 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 848
PflMI CCANNNNNTGG 1 cut(s) 250
PkrI GCNGC 6 cut(s) 100, 294, 443, 603, 606, 609
PleI GAGTC 2 cut(s) 65, 420
PpsI GAGTC 2 cut(s) 65, 420
PpuMI RGGWCCY 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 857
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 304, 415
PspGI CCWGG 2 cut(s) 304, 415
PspN4I GGNNCC 2 cut(s) 355, 961
PspPI GGNCC 1 cut(s) 17
PspPPI RGGWCCY 1 cut(s) 17
PspXI VCTCGAGB 1 cut(s) 463
PstI CTGCAG 1 cut(s) 25
PstNI CAGNNNCTG 1 cut(s) 20
RsaI GTAC 5 cut(s) 42, 355, 382, 469, 755
RsaNI GTAC 5 cut(s) 41, 354, 381, 468, 754
RseI CAYNNNNRTG 1 cut(s) 243
SacI GAGCTC 1 cut(s) 857
SatI GCNGC 6 cut(s) 99, 293, 442, 602, 605, 608
Sau3AI GATC 8 cut(s) 155, 211, 253, 279, 592, 769, 775, 859
Sau96I GGNCC 1 cut(s) 17
ScaI AGTACT 1 cut(s) 469
SchI GAGTC 2 cut(s) 65, 421
ScrFI CCNGG 5 cut(s) 29, 30, 76, 306, 417
SduI GDGCHC 2 cut(s) 547, 857
SfaNI GCATC 2 cut(s) 475, 951
SfcI CTRYAG 1 cut(s) 21
Sfr274I CTCGAG 1 cut(s) 463
SfuI TTCGAA 2 cut(s) 93, 457
SinI GGWCC 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 463
SmaI CCCGGG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 2 cut(s) 463, 901
SmoI CTYRAG 2 cut(s) 463, 901
Sse9I AATT 5 cut(s) 177, 331, 622, 716, 760
SsiI CCGC 3 cut(s) 248, 602, 906
SspMI CTAG 2 cut(s) 317, 321
SstI GAGCTC 1 cut(s) 857
StyD4I CCNGG 5 cut(s) 27, 28, 74, 304, 415
TaaI ACNGT 2 cut(s) 105, 542
TaiI ACGT 3 cut(s) 90, 207, 936
TaqI TCGA 5 cut(s) 93, 457, 464, 851, 867
TasI AATT 5 cut(s) 177, 331, 622, 716, 760
TatI WGTACW 2 cut(s) 467, 753
TauI GCSGC 1 cut(s) 604
TfiI GAWTC 1 cut(s) 848
TseFI GTSAC 1 cut(s) 645
TseI GCWGC 5 cut(s) 98, 292, 441, 604, 607
Tsp45I GTSAC 1 cut(s) 645
TspDTI ATGAA 5 cut(s) 158, 212, 410, 672, 936
TspMI CCCGGG 1 cut(s) 28
Van91I CCANNNNNTGG 1 cut(s) 250
VneI GTGCAC 1 cut(s) 543
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 3 cut(s) 331, 716, 760
XceI RCATGY 2 cut(s) 193, 653
XhoI CTCGAG 1 cut(s) 463
XmaI CCCGGG 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 2 cut(s) 317, 321
ZrmI AGTACT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.