Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8467433.1

Orthogroup ID

OG0012045

Physical Location & Seq

Genomic Coordinates Forward (+)

1116 .. 1950

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8467433.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 835 bp

atgtcatccattgcaggacttgcagacccgggtgagaaggtacacaagaaatccttccaccggaggaacgactccggcgagctggacgtgttcgaagctgcacggtatttctctggctacaacgaagctccgacgatgatgatgaaagaagatagatcgtcatggagaggaggcagaattagtcttgacatgccaatccgaaacgtgcttgatcaacagcttcatcatcatcatcatcatcatcaccatgcggtggatcaaaagcagaatatgaaagaaaagatcaaatacaagcagccaagctctccaggtgggagactagctagcttcttgaattcacttttcaatcaatcaggttccaagaagaagaaatcaaaatccagtaccacgcagtctatgaaagatgaggaggagagtccaggtgggaggagaagaagaagaagcagcattagccattttcgaagctcgagtactactaccaccaccgatgccaagtccatatactcatcttcaagctctggcttcagaacacctcctccttacggtgcacaaatcgcaacggccaagagctacaaagattggagaagttactcagatcacaagccgcagcagcaagtggtgtccaatttgtccaagcatagtgttctgtcacatgcaaaatctacactcttggatgagaaagtttcatcaaacagagagctaaactggttggacgagaaattcaaatacaacaaccggctgtcgttgtcggagaagtacaagaattcaatagatcaggatcacaacaagggattgttgaagaggctgagtgaggtggttgatgatgatgatgatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009914 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

31.72

Weight (kDa)

9.68

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69160
fragaria_vesca	FvH4_4g29630
malus_domestica	MD13G1059400.v1.1 MD16G1058700.v1.1
prunus_persica	Prupe.1G290400_v2.0.a1
pyrus_communis	pycom13g05290 pycom16g05130
rosa_chinensis	RchiOBHm_Chr4g0437861
rosa_laevigata	RLG00000006406
rosa_multiflora	Rmu_co8467433.1_g000001 Rmu_sc0008907.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379040
rosa_rugosa	Rorug04G0304800
rosa_samantha	Rh4AG356800 Rh4BG367600 Rh4CG381600 Rh4DG362100
rosa_wichuraiana	Rw0G011590 Rw0G016090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	253
AciI	CCGC	2 cut(s)	251, 605
AclWI	GGATC	2 cut(s)	264, 786
AcoI	YGGCCR	1 cut(s)	561
AcsI	RAATTY	3 cut(s)	334, 719, 763
AcuI	CTGAAG	1 cut(s)	508
AfaI	GTAC	4 cut(s)	42, 385, 472, 758
AfiI	CCNNNNNNNGG	3 cut(s)	60, 253, 542
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	6 cut(s)	334, 346, 513, 724, 768, 799
AjiI	CACGTC	1 cut(s)	88
AjnI	CCWGG	2 cut(s)	307, 418
AloI	GAACNNNNNNTCC	2 cut(s)	520, 552
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	1 cut(s)	310
Alw44I	GTGCAC	1 cut(s)	546
AlwI	GGATC	2 cut(s)	264, 786
Ama87I	CYCGRG	2 cut(s)	28, 466
AoxI	GGCC	1 cut(s)	561
ApaLI	GTGCAC	1 cut(s)	546
ApeKI	GCWGC	5 cut(s)	98, 295, 444, 607, 610
ApoI	RAATTY	3 cut(s)	334, 719, 763
Asp700I	GAANNNNTTC	1 cut(s)	53
AsuC2I	CCSGG	2 cut(s)	29, 30
AsuHPI	GGTGA	2 cut(s)	44, 236
AsuII	TTCGAA	2 cut(s)	93, 460
AsuNHI	GCTAGC	1 cut(s)	323
AvaI	CYCGRG	2 cut(s)	28, 466
BaeGI	GKGCMC	1 cut(s)	550
BarI	GAAGNNNNNNTAC	2 cut(s)	454, 486
Bbv12I	GWGCWC	1 cut(s)	550
BbvI	GCAGC	5 cut(s)	85, 307, 456, 619, 622
BceAI	ACGGC	1 cut(s)	576
BciT130I	CCWGG	2 cut(s)	309, 420
BclI	TGATCA	1 cut(s)	211
BcnI	CCSGG	2 cut(s)	29, 30
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	2 cut(s)	320, 324
BisI	GCNGC	6 cut(s)	99, 296, 445, 605, 608, 611
BlsI	GCNGC	6 cut(s)	100, 297, 446, 606, 609, 612
BmcAI	AGTACT	1 cut(s)	472
Bme1390I	CCNGG	4 cut(s)	29, 30, 309, 420
BmeT110I	CYCGRG	2 cut(s)	28, 466
BmgBI	CACGTC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	358
BmrFI	CCNGG	4 cut(s)	29, 30, 309, 420
BmsI	GCATC	1 cut(s)	478
BmtI	GCTAGC	1 cut(s)	327
BpmI	CTGGAG	1 cut(s)	291
Bpu14I	TTCGAA	2 cut(s)	93, 460
BpuMI	CCSGG	2 cut(s)	29, 30
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	1 cut(s)	28
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	520, 550
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 253, 542
Bse118I	RCCGGY	1 cut(s)	735
Bse1I	ACTGG	2 cut(s)	381, 710
Bse3DI	GCAATG	1 cut(s)	9
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	2 cut(s)	309, 420
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	2 cut(s)	5, 679
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	3 cut(s)	60, 253, 542
BseMI	GCAATG	1 cut(s)	9
BseMII	CTCAG	2 cut(s)	606, 797
BseNI	ACTGG	2 cut(s)	381, 710
BseRI	GAGGAG	5 cut(s)	183, 422, 425, 442, 525
BseSI	GKGCMC	1 cut(s)	550
BseXI	GCAGC	5 cut(s)	85, 307, 456, 619, 622
BsgI	GTGCAG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	563
BsiHKAI	GWGCWC	1 cut(s)	550
BsiHKCI	CYCGRG	2 cut(s)	28, 466
BsiSI	CCGG	4 cut(s)	29, 61, 75, 736
BslI	CCNNNNNNNGG	3 cut(s)	60, 253, 542
BsmAI	GTCTC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	563
BsoBI	CYCGRG	2 cut(s)	28, 466
Bsp119I	TTCGAA	2 cut(s)	93, 460
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp143I	GATC	7 cut(s)	155, 211, 256, 282, 595, 772, 778
BspACI	CCGC	2 cut(s)	251, 605
BspANI	GGCC	1 cut(s)	563
BspCNI	CTCAG	2 cut(s)	605, 798
BspLI	GGNNCC	1 cut(s)	358
BspOI	GCTAGC	1 cut(s)	327
BspPI	GGATC	2 cut(s)	264, 786
BspT104I	TTCGAA	2 cut(s)	93, 460
BsrDI	GCAATG	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	735
BsrI	ACTGG	2 cut(s)	381, 710
BssAI	RCCGGY	1 cut(s)	735
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	7 cut(s)	155, 211, 256, 282, 595, 772, 778
Bst2UI	CCWGG	2 cut(s)	309, 420
Bst4CI	ACNGT	2 cut(s)	105, 545
Bst6I	CTCTTC	1 cut(s)	794
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBI	TTCGAA	2 cut(s)	93, 460
BstC8I	GCNNGC	2 cut(s)	80, 325
BstDEI	CTNAG	2 cut(s)	592, 806
BstF5I	GGATG	2 cut(s)	5, 679
BstKTI	GATC	7 cut(s)	158, 214, 259, 285, 598, 775, 781
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	7 cut(s)	155, 211, 256, 282, 595, 772, 778
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 450, 554, 610
BstNI	CCWGG	2 cut(s)	309, 420
BstNSI	RCATGY	2 cut(s)	193, 656
BstSCI	CCNGG	4 cut(s)	27, 28, 307, 418
BstSLI	GKGCMC	1 cut(s)	550
BstV1I	GCAGC	5 cut(s)	85, 307, 456, 619, 622
BsuRI	GGCC	1 cut(s)	563
BtrI	CACGTC	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	5, 679
Cac8I	GCNNGC	2 cut(s)	80, 325
Cfr10I	RCCGGY	1 cut(s)	735
Cfr9I	CCCGGG	1 cut(s)	28
Csp6I	GTAC	4 cut(s)	41, 384, 471, 757
CviAII	CATG	4 cut(s)	162, 190, 248, 653
CviQI	GTAC	4 cut(s)	41, 384, 471, 757
DdeI	CTNAG	2 cut(s)	592, 806
DpnI	GATC	7 cut(s)	157, 213, 258, 284, 597, 774, 780
DpnII	GATC	7 cut(s)	155, 211, 256, 282, 595, 772, 778
EaeI	YGGCCR	1 cut(s)	561
Eam1104I	CTCTTC	1 cut(s)	794
EarI	CTCTTC	1 cut(s)	794
Eco57I	CTGAAG	1 cut(s)	508
Eco88I	CYCGRG	2 cut(s)	28, 466
EcoRI	GAATTC	2 cut(s)	334, 763
EcoRII	CCWGG	2 cut(s)	307, 418
FaeI	CATG	4 cut(s)	165, 193, 251, 656
FaiI	YATR	9 cut(s)	163, 191, 249, 272, 398, 500, 502, 639, 654
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	4 cut(s)	161, 189, 247, 652
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	6 cut(s)	99, 296, 445, 605, 608, 611
FokI	GGATG	1 cut(s)	686
Fsp4HI	GCNGC	6 cut(s)	99, 296, 445, 605, 608, 611
FspBI	CTAG	2 cut(s)	320, 324
GluI	GCNGC	6 cut(s)	99, 296, 445, 605, 608, 611
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	563
HapII	CCGG	4 cut(s)	29, 61, 75, 736
Hin1II	CATG	4 cut(s)	165, 193, 251, 656
HinfI	GANTC	2 cut(s)	71, 415
HpaII	CCGG	4 cut(s)	29, 61, 75, 736
HphI	GGTGA	2 cut(s)	44, 236
Hpy166II	GTNNAC	2 cut(s)	43, 548
Hpy188I	TCNGA	5 cut(s)	132, 200, 527, 595, 751
Hpy188III	TCNNGA	3 cut(s)	185, 331, 776
Hpy8I	GTNNAC	2 cut(s)	43, 548
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	31, 64
HpyCH4III	ACNGT	2 cut(s)	105, 545
HpyCH4IV	ACGT	2 cut(s)	87, 204
HpyCH4V	TGCA	5 cut(s)	14, 23, 101, 548, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 450, 554, 610
HpyF3I	CTNAG	2 cut(s)	592, 806
HpySE526I	ACGT	2 cut(s)	87, 204
Hsp92II	CATG	4 cut(s)	165, 193, 251, 656
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	7 cut(s)	155, 211, 256, 282, 595, 772, 778
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	5 cut(s)	85, 307, 456, 619, 622
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	2 cut(s)	320, 324
MaeII	ACGT	2 cut(s)	87, 204
MaeIII	GTNAC	2 cut(s)	587, 648
MalI	GATC	7 cut(s)	157, 213, 258, 284, 597, 774, 780
MboI	GATC	7 cut(s)	155, 211, 256, 282, 595, 772, 778
MboII	GAAGA	8 cut(s)	161, 376, 379, 444, 447, 450, 501, 811
MhlI	GDGCHC	1 cut(s)	550
MluCI	AATT	5 cut(s)	177, 334, 625, 719, 763
MlyI	GAGTC	2 cut(s)	65, 424
MmeI	TCCRAC	3 cut(s)	155, 690, 729
MroXI	GAANNNNTTC	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	4 cut(s)	29, 61, 75, 736
MspR9I	CCNGG	4 cut(s)	29, 30, 309, 420
MvaI	CCWGG	2 cut(s)	309, 420
MwoI	GCNNNNNNNGC	4 cut(s)	20, 450, 554, 610
NciI	CCSGG	2 cut(s)	29, 30
NdeII	GATC	7 cut(s)	155, 211, 256, 282, 595, 772, 778
NheI	GCTAGC	1 cut(s)	323
NlaIII	CATG	4 cut(s)	165, 193, 251, 656
NlaIV	GGNNCC	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	648
NspI	RCATGY	2 cut(s)	193, 656
NspV	TTCGAA	2 cut(s)	93, 460
PaeR7I	CTCGAG	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	53
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	6 cut(s)	100, 297, 446, 606, 609, 612
PleI	GAGTC	2 cut(s)	65, 423
PpsI	GAGTC	2 cut(s)	65, 423
Psp6I	CCWGG	2 cut(s)	307, 418
PspGI	CCWGG	2 cut(s)	307, 418
PspN4I	GGNNCC	1 cut(s)	358
PspXI	VCTCGAGB	1 cut(s)	466
RsaI	GTAC	4 cut(s)	42, 385, 472, 758
RsaNI	GTAC	4 cut(s)	41, 384, 471, 757
RseI	CAYNNNNRTG	1 cut(s)	246
SatI	GCNGC	6 cut(s)	99, 296, 445, 605, 608, 611
Sau3AI	GATC	7 cut(s)	155, 211, 256, 282, 595, 772, 778
ScaI	AGTACT	1 cut(s)	472
SchI	GAGTC	2 cut(s)	65, 424
ScrFI	CCNGG	4 cut(s)	29, 30, 309, 420
SduI	GDGCHC	1 cut(s)	550
SfaNI	GCATC	1 cut(s)	478
Sfr274I	CTCGAG	1 cut(s)	466
SfuI	TTCGAA	2 cut(s)	93, 460
SlaI	CTCGAG	1 cut(s)	466
SmaI	CCCGGG	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	5 cut(s)	177, 334, 625, 719, 763
SsiI	CCGC	2 cut(s)	251, 605
SspMI	CTAG	2 cut(s)	320, 324
StyD4I	CCNGG	4 cut(s)	27, 28, 307, 418
TaaI	ACNGT	2 cut(s)	105, 545
TaiI	ACGT	2 cut(s)	90, 207
TaqI	TCGA	3 cut(s)	93, 460, 467
TasI	AATT	5 cut(s)	177, 334, 625, 719, 763
TatI	WGTACW	2 cut(s)	470, 756
TauI	GCSGC	1 cut(s)	607
TseFI	GTSAC	1 cut(s)	648
TseI	GCWGC	5 cut(s)	98, 295, 444, 607, 610
Tsp45I	GTSAC	1 cut(s)	648
TspDTI	ATGAA	5 cut(s)	158, 212, 287, 413, 675
TspMI	CCCGGG	1 cut(s)	28
Van91I	CCANNNNNTGG	1 cut(s)	253
VneI	GTGCAC	1 cut(s)	546
XapI	RAATTY	3 cut(s)	334, 719, 763
XceI	RCATGY	2 cut(s)	193, 656
XhoI	CTCGAG	1 cut(s)	466
XmaI	CCCGGG	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	2 cut(s)	320, 324
ZrmI	AGTACT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.