Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012045

Physical Location & Seq

Genomic Coordinates Reverse (-)

28915210 .. 28916454

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G290400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTCCAGCATTAGTACAGGGGTGCTCTCAGCTGACCCTGCAGCTGATAAGATACACAAGAAATCCTTCCACCGAAGGAACGATTCGGGTGAGCTCGATGTATTTGAAGCTGCAAGGTACTTCTCTGGATACAATGAAGCTCCCAGCAGCCATAACAACAACACCAACACGTCGACGTTTTCGCAGAAGATGATGAAAGAAGACAGATCATGGAGAGGAGGCAGAATTAGCCTTGACATTCCTATTAGACACATGCTTCATCATCCTCAACAGCACCCTCATCATCATCACCATCATCATCATGTGGTGGTGGAAAAGCAAAACGTCAAAGACAAGAAATACAAGCAGCCGAGCTCTCCAGGTGGGAGACTAGCTAGCTTCTTGAATTCTTTGTTCAACCAATCAGCATCTAAGAAGAAGAAGTCAAAATCCAGTACCACGCAGTCCATGAAAGACCATCATGAGGAGGAGAGTCCTGGTGGAAGGAGGAGAAGGAGGAGCAGCATTAGTCATTTTCGAAGCTCGAGCACCGCAGATGCCAAGTCCATATATTCTTCATCAAGTTCAGGTTTCAGAACACCTCCTCCGTACAATTATGGACAAACAGCAGCCTCAAAGAGCTGCAAAGACTTGAGAAGCTATTCAGATCACAAGCAGCAAAACCTGCAGCAGCAGGTGGTGTCTTTGTCAAAGTACAATACTAATGGACAAGTAAAATCCACAGCAGCCTTGCAATATGAGGAGGTGGTCCTGGATGACAAGAAATCAAACAGAGAACTGTCTTGGTTGGATCACGAGAAATTCAAATACAGTAATGGGTTGTCAGAGAAGTACAAGATTAGTTCAGATCAGGATCACAAGGGGTTGCTCAAAAGGCTCAGTGAGGTTGTTGATGATGATGATTATGATGAAGGTGCAGATAGTGATTCAAGCTCTGATCTTTTTGAGTTGCAGAACTATGACTTGGGTTGTTACTCAAGCGGCTTGCCCGTGTATGAAACTACAAATGTGGAGAACATCAAGATCAGATCATCAGGAACACCAATTTCCAATGCCTCATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0009914 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0010817 GO:0010928 GO:0010929 GO:0016020 GO:0023051 GO:0023056 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

355

Amino Acids

39.92

Weight (kDa)

9.08

Isoelectric Point (pI)

59.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69160
fragaria_vesca	FvH4_4g29630
malus_domestica	MD13G1059400.v1.1 MD16G1058700.v1.1
prunus_persica	Prupe.1G290400_v2.0.a1
pyrus_communis	pycom13g05290 pycom16g05130
rosa_chinensis	RchiOBHm_Chr4g0437861
rosa_laevigata	RLG00000006406
rosa_multiflora	Rmu_co8467433.1_g000001 Rmu_sc0008907.1_g000004
rosa_roxburghii	Rroxscaffold_5G00379040
rosa_rugosa	Rorug04G0304800
rosa_samantha	Rh4AG356800 Rh4BG367600 Rh4CG381600 Rh4DG362100
rosa_wichuraiana	Rw0G011590 Rw0G016090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	664
Acc36I	ACCTGC	2 cut(s)	664, 672
AccI	GTMKAC	1 cut(s)	173
AciI	CCGC	2 cut(s)	531, 981
AclWI	GGATC	2 cut(s)	798, 861
AcsI	RAATTY	2 cut(s)	385, 800
AfaI	GTAC	6 cut(s)	16, 119, 436, 590, 695, 833
AfiI	CCNNNNNNNGG	1 cut(s)	463
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	5 cut(s)	107, 385, 397, 805, 930
AjiI	CACGTC	1 cut(s)	171
AjnI	CCWGG	3 cut(s)	358, 475, 750
AjuI	GAANNNNNNNTTGG	2 cut(s)	947, 979
AloI	GAACNNNNNNTCC	2 cut(s)	568, 600
Alw21I	GWGCWC	4 cut(s)	27, 96, 356, 530
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	2 cut(s)	798, 861
Ama87I	CYCGRG	1 cut(s)	523
ApoI	RAATTY	2 cut(s)	385, 800
Asp700I	GAANNNNTTC	2 cut(s)	65, 640
AspS9I	GGNCC	1 cut(s)	748
AsuHPI	GGTGA	2 cut(s)	101, 281
AsuII	TTCGAA	1 cut(s)	517
AsuNHI	GCTAGC	1 cut(s)	374
AvaI	CYCGRG	1 cut(s)	523
AvaII	GGWCC	1 cut(s)	748
BanII	GRGCYC	2 cut(s)	96, 356
BauI	CACGAG	1 cut(s)	794
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	4 cut(s)	27, 96, 356, 530
BccI	CCATC	2 cut(s)	300, 465
BciT130I	CCWGG	3 cut(s)	360, 477, 752
BciVI	GTATCC	1 cut(s)	122
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	2 cut(s)	371, 375
BfmI	CTRYAG	2 cut(s)	39, 665
BfuAI	ACCTGC	2 cut(s)	664, 672
BfuI	GTATCC	1 cut(s)	122
Bme1390I	CCNGG	3 cut(s)	360, 477, 752
Bme18I	GGWCC	1 cut(s)	748
BmeT110I	CYCGRG	1 cut(s)	523
BmgBI	CACGTC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	748
BmrFI	CCNGG	3 cut(s)	360, 477, 752
BmsI	GCATC	2 cut(s)	416, 526
BmtI	GCTAGC	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	517
BpuEI	CTTGAG	2 cut(s)	652, 961
BsaBI	GATNNNNATC	1 cut(s)	852
BsaXI	ACNNNNNCTCC	2 cut(s)	568, 598
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	852
BseBI	CCWGG	3 cut(s)	360, 477, 752
BseGI	GGATG	3 cut(s)	262, 760, 1058
BseJI	GATNNNNATC	1 cut(s)	852
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseMII	CTCAG	2 cut(s)	42, 892
BseNI	ACTGG	1 cut(s)	432
BseRI	GAGGAG	7 cut(s)	231, 479, 482, 502, 511, 573, 755
BseYI	CCCAGC	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	936
BsiHKAI	GWGCWC	4 cut(s)	27, 96, 356, 530
BsiHKCI	CYCGRG	1 cut(s)	523
BslI	CCNNNNNNNGG	1 cut(s)	463
BsmAI	GTCTC	1 cut(s)	361
BsoBI	CYCGRG	1 cut(s)	523
Bsp119I	TTCGAA	1 cut(s)	517
Bsp1286I	GDGCHC	4 cut(s)	27, 96, 356, 530
Bsp143I	GATC	8 cut(s)	206, 646, 790, 847, 853, 937, 1023, 1028
BspACI	CCGC	2 cut(s)	531, 981
BspCNI	CTCAG	2 cut(s)	41, 891
BspHI	TCATGA	1 cut(s)	460
BspMAI	CTGCAG	2 cut(s)	43, 669
BspMI	ACCTGC	2 cut(s)	664, 672
BspOI	GCTAGC	1 cut(s)	378
BspPI	GGATC	2 cut(s)	798, 861
BspT104I	TTCGAA	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	432
BssMI	GATC	8 cut(s)	206, 646, 790, 847, 853, 937, 1023, 1028
BssSI	CACGAG	1 cut(s)	794
Bst2BI	CACGAG	1 cut(s)	794
Bst2UI	CCWGG	3 cut(s)	360, 477, 752
Bst4CI	ACNGT	2 cut(s)	780, 812
BstAPI	GCANNNNNTGC	1 cut(s)	664
BstBI	TTCGAA	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	376, 986
BstDEI	CTNAG	3 cut(s)	28, 411, 878
BstF5I	GGATG	3 cut(s)	262, 760, 1058
BstKTI	GATC	8 cut(s)	209, 649, 793, 850, 856, 940, 1026, 1031
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	8 cut(s)	206, 646, 790, 847, 853, 937, 1023, 1028
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 228, 664, 874
BstNI	CCWGG	3 cut(s)	360, 477, 752
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	3 cut(s)	358, 475, 750
BstSFI	CTRYAG	2 cut(s)	39, 665
BstV2I	GAAGAC	1 cut(s)	207
BsuI	GTATCC	1 cut(s)	122
BtrI	CACGTC	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	262, 760, 1058
BtsIMutI	CAGTG	1 cut(s)	886
BveI	ACCTGC	2 cut(s)	664, 672
Cac8I	GCNNGC	2 cut(s)	376, 986
CciI	TCATGA	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	748
Csp6I	GTAC	6 cut(s)	15, 118, 435, 589, 694, 832
CviAII	CATG	5 cut(s)	210, 253, 302, 448, 461
CviQI	GTAC	6 cut(s)	15, 118, 435, 589, 694, 832
DdeI	CTNAG	3 cut(s)	28, 411, 878
DpnI	GATC	8 cut(s)	208, 648, 792, 849, 855, 939, 1025, 1030
DpnII	GATC	8 cut(s)	206, 646, 790, 847, 853, 937, 1023, 1028
Ecl136II	GAGCTC	2 cut(s)	94, 354
Eco24I	GRGCYC	2 cut(s)	96, 356
Eco47I	GGWCC	1 cut(s)	748
Eco53kI	GAGCTC	2 cut(s)	94, 354
Eco88I	CYCGRG	1 cut(s)	523
EcoICRI	GAGCTC	2 cut(s)	94, 354
EcoRI	GAATTC	1 cut(s)	385
EcoRII	CCWGG	3 cut(s)	358, 475, 750
EcoT38I	GRGCYC	2 cut(s)	96, 356
FaeI	CATG	5 cut(s)	213, 256, 305, 451, 464
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FatI	CATG	5 cut(s)	209, 252, 301, 447, 460
FblI	GTMKAC	1 cut(s)	173
FokI	GGATG	3 cut(s)	249, 767, 1045
FriOI	GRGCYC	2 cut(s)	96, 356
FspBI	CTAG	2 cut(s)	371, 375
GsaI	CCCAGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	342
Hin1II	CATG	5 cut(s)	213, 256, 305, 451, 464
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	3 cut(s)	83, 472, 926
HphI	GGTGA	2 cut(s)	101, 281
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	6 cut(s)	575, 646, 826, 847, 937, 1028
Hpy188III	TCNNGA	8 cut(s)	126, 382, 461, 794, 851, 1021, 1035, 1062
Hpy8I	GTNNAC	1 cut(s)	174
Hpy99I	CGWCG	2 cut(s)	175, 178
HpyAV	CCTTC	5 cut(s)	69, 76, 477, 486, 905
HpyCH4III	ACNGT	2 cut(s)	780, 812
HpyCH4IV	ACGT	3 cut(s)	170, 176, 324
HpyCH4V	TGCA	7 cut(s)	41, 113, 624, 667, 733, 917, 952
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 228, 664, 874
HpyF3I	CTNAG	3 cut(s)	28, 411, 878
HpySE526I	ACGT	3 cut(s)	170, 176, 324
Hsp92II	CATG	5 cut(s)	213, 256, 305, 451, 464
Kzo9I	GATC	8 cut(s)	206, 646, 790, 847, 853, 937, 1023, 1028
LmnI	GCTCC	2 cut(s)	145, 498
LweI	GCATC	2 cut(s)	416, 526
MaeI	CTAG	2 cut(s)	371, 375
MaeII	ACGT	3 cut(s)	170, 176, 324
MaeIII	GTNAC	1 cut(s)	971
MalI	GATC	8 cut(s)	208, 648, 792, 849, 855, 939, 1025, 1030
MboI	GATC	8 cut(s)	206, 646, 790, 847, 853, 937, 1023, 1028
MboII	GAAGA	5 cut(s)	199, 212, 427, 430, 546
MhlI	GDGCHC	4 cut(s)	27, 96, 356, 530
MluCI	AATT	5 cut(s)	225, 385, 592, 800, 1044
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	1 cut(s)	768
MroXI	GAANNNNTTC	2 cut(s)	65, 640
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	2 cut(s)	32, 44
MspR9I	CCNGG	3 cut(s)	360, 477, 752
MvaI	CCWGG	3 cut(s)	360, 477, 752
MwoI	GCNNNNNNNGC	4 cut(s)	38, 228, 664, 874
NdeII	GATC	8 cut(s)	206, 646, 790, 847, 853, 937, 1023, 1028
NheI	GCTAGC	1 cut(s)	374
NlaIII	CATG	5 cut(s)	213, 256, 305, 451, 464
NmeAIII	GCCGAG	1 cut(s)	375
NspI	RCATGY	1 cut(s)	256
NspV	TTCGAA	1 cut(s)	517
PaeR7I	CTCGAG	1 cut(s)	523
PagI	TCATGA	1 cut(s)	460
PaqCI	CACCTGC	1 cut(s)	664
PdmI	GAANNNNTTC	2 cut(s)	65, 640
PfeI	GAWTC	2 cut(s)	83, 926
PfoI	TCCNGGA	1 cut(s)	750
PleI	GAGTC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	480
Psp124BI	GAGCTC	2 cut(s)	96, 356
Psp6I	CCWGG	3 cut(s)	358, 475, 750
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	3 cut(s)	358, 475, 750
PspPI	GGNCC	1 cut(s)	748
PspXI	VCTCGAGB	1 cut(s)	523
PstI	CTGCAG	2 cut(s)	43, 669
PvuII	CAGCTG	2 cut(s)	32, 44
RsaI	GTAC	6 cut(s)	16, 119, 436, 590, 695, 833
RsaNI	GTAC	6 cut(s)	15, 118, 435, 589, 694, 832
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	2 cut(s)	96, 356
SalI	GTCGAC	1 cut(s)	172
Sau3AI	GATC	8 cut(s)	206, 646, 790, 847, 853, 937, 1023, 1028
Sau96I	GGNCC	1 cut(s)	748
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	3 cut(s)	360, 477, 752
SduI	GDGCHC	4 cut(s)	27, 96, 356, 530
SfaNI	GCATC	2 cut(s)	416, 526
SfcI	CTRYAG	2 cut(s)	39, 665
Sfr274I	CTCGAG	1 cut(s)	523
SfuI	TTCGAA	1 cut(s)	517
SgrDI	CGTCGACG	1 cut(s)	172
SinI	GGWCC	1 cut(s)	748
SlaI	CTCGAG	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	3 cut(s)	523, 631, 976
SmoI	CTYRAG	3 cut(s)	523, 631, 976
Sse9I	AATT	5 cut(s)	225, 385, 592, 800, 1044
SsiI	CCGC	2 cut(s)	531, 981
SspMI	CTAG	2 cut(s)	371, 375
SstI	GAGCTC	2 cut(s)	96, 356
StyD4I	CCNGG	3 cut(s)	358, 475, 750
TaaI	ACNGT	2 cut(s)	780, 812
TaiI	ACGT	3 cut(s)	173, 179, 327
TaqI	TCGA	4 cut(s)	96, 173, 517, 524
TasI	AATT	5 cut(s)	225, 385, 592, 800, 1044
TatI	WGTACW	3 cut(s)	14, 693, 831
TauI	GCSGC	1 cut(s)	984
TfiI	GAWTC	2 cut(s)	83, 926
TscAI	CASTG	1 cut(s)	886
TspDTI	ATGAA	7 cut(s)	150, 209, 248, 464, 546, 924, 1011
TspGWI	ACGGA	1 cut(s)	576
TspRI	CASTG	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	748
XapI	RAATTY	2 cut(s)	385, 800
XceI	RCATGY	1 cut(s)	256
XhoI	CTCGAG	1 cut(s)	523
XmiI	GTMKAC	1 cut(s)	173
XmnI	GAANNNNTTC	2 cut(s)	65, 640
XspI	CTAG	2 cut(s)	371, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.