FvH4_4g29630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012045
Physical Location & Seq
Forward (+)
29673944 .. 29675870
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g29630.t1

Sequence Viewer

Length: 978 bp
ATGTCATCTATTGCAGGAGTTGCAGACCCAGCTGAGAAAGCACACAAGAAATCCTTCCACCGGAGGAACGACTCAGGCGAGCTGGACGTGTTCGAAGCAGCACGGTACTTCTCCGGCTACAACGAAGCTGCTGCTCCGACGATGATGAAAGAAGATAGATCGTCATGGAGAGGAGGCAGAATTAGTCTTGATATGCCAATCCGAAACGTGTTGGATCATCAGCTTCTTCATCATCATCATCACCATGCGGTGGATCAGAAACAGAATATGAAAGAAAAGATCAAGTACAAGCAGCCGAGCTCTCCAGGTGGGAGACTAGCTAGCTTCTTGAATTCGCTTTTCAACCAATCTAGCTCCAAGAAGAAGAAACCAAAATCCTCGCAGTCTATGAAAGATGAGGAGGAGAGTCCAGGTGGAAGGAGAAGAAGAAGAAGCAGCATTAGCCATTTCCGAAGCGCGAGCAGTACTACTACTACTACTACTGATGCCAAGTCCATATACTCATCTTCAAGCTCTGGCTTCAGAACACCTCCTCCTTACAGTGCACAAATCGCAACCGCCAAGAGCCACAAAGATTGGAAAATAAGTCACTCAGATCACAAGCCAGTGGTGTCCAATTTGTCCAAACATGATGTTATGTCACATGCAAAATCTTCAGTCTCGGATGAGAAAGTTTCATCAAACAGAGAGTTAAACTGGTTGGACGAGAAGTTAAAATACAATAACCGGCTGTCGTTGTCAGAAAAATACAAGAGTTCAACAGATCAGGATCACAACAAAGGATTGTTGAAGAGGCTGAGTGAGGTGGTTGATGTTGATGATGACGATGGTGCAGAAAGTGATTCGAGCTCCGATCTTTTCGAGTTGCAGAACTATGACTTGGGAGGATACTACTCGAGCGGTTTGCCTGTGTATGAAACTACCAACGTGGATAGCATCAAGAATATCAGAGGAACCCCGATTGCAAATGCCTCATAG

Protein Analysis

326

Amino Acids

36.32

Weight (kDa)

9.23

Isoelectric Point (pI)

59.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012045)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69160
fragaria_vesca FvH4_4g29630
malus_domestica MD13G1059400.v1.1 MD16G1058700.v1.1
prunus_persica Prupe.1G290400_v2.0.a1
pyrus_communis pycom13g05290 pycom16g05130
rosa_chinensis RchiOBHm_Chr4g0437861
rosa_laevigata RLG00000006406
rosa_multiflora Rmu_co8467433.1_g000001 Rmu_sc0008907.1_g000004
rosa_roxburghii Rroxscaffold_5G00379040
rosa_rugosa Rorug04G0304800
rosa_samantha Rh4AG356800 Rh4BG367600 Rh4CG381600 Rh4DG362100
rosa_wichuraiana Rw0G011590 Rw0G016090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 250
AccBSI CCGCTC 1 cut(s) 900
AccII CGCG 1 cut(s) 458
AciI CCGC 3 cut(s) 248, 558, 900
AclWI GGATC 3 cut(s) 222, 261, 777
AcsI RAATTY 1 cut(s) 331
AcuI CTGAAG 2 cut(s) 505, 639
AfaI GTAC 3 cut(s) 107, 287, 466
AfiI CCNNNNNNNGG 2 cut(s) 60, 250
AflIII ACRYGT 2 cut(s) 87, 207
AgsI TTSAA 5 cut(s) 331, 343, 510, 759, 790
AjiI CACGTC 1 cut(s) 88
AjnI CCWGG 2 cut(s) 304, 409
AjuI GAANNNNNNNTTGG 2 cut(s) 863, 895
AloI GAACNNNNNNTCC 2 cut(s) 517, 549
Alw21I GWGCWC 3 cut(s) 302, 547, 851
Alw26I GTCTC 2 cut(s) 307, 664
Alw44I GTGCAC 1 cut(s) 543
AlwI GGATC 3 cut(s) 222, 261, 777
Ama87I CYCGRG 1 cut(s) 895
ApaLI GTGCAC 1 cut(s) 543
ApeKI GCWGC 5 cut(s) 98, 128, 131, 292, 435
ApoI RAATTY 1 cut(s) 331
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 458
AsuHPI GGTGA 1 cut(s) 233
AsuII TTCGAA 1 cut(s) 93
AsuNHI GCTAGC 1 cut(s) 320
AvaI CYCGRG 1 cut(s) 895
BaeGI GKGCMC 1 cut(s) 547
BanII GRGCYC 2 cut(s) 302, 851
BarI GAAGNNNNNNTAC 2 cut(s) 701, 733
Bbv12I GWGCWC 3 cut(s) 302, 547, 851
BbvI GCAGC 5 cut(s) 110, 115, 118, 304, 447
BccI CCATC 1 cut(s) 821
BcgI CGANNNNNNTGC 4 cut(s) 113, 147, 886, 920
BciT130I CCWGG 2 cut(s) 306, 411
BciVI GTATCC 1 cut(s) 881
BcoDI GTCTC 2 cut(s) 307, 664
BfaI CTAG 3 cut(s) 317, 321, 351
BfuI GTATCC 1 cut(s) 881
BisI GCNGC 5 cut(s) 99, 129, 132, 293, 436
BlsI GCNGC 5 cut(s) 100, 130, 133, 294, 437
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 2 cut(s) 306, 411
BmeT110I CYCGRG 1 cut(s) 895
BmgBI CACGTC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 955
BmrFI CCNGG 2 cut(s) 306, 411
BmsI GCATC 2 cut(s) 475, 945
BmtI GCTAGC 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 288
Bpu14I TTCGAA 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 768
BsaWI WCCGGW 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 517, 547
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 250
Bse118I RCCGGY 1 cut(s) 726
Bse1I ACTGG 2 cut(s) 605, 701
Bse8I GATNNNNATC 1 cut(s) 768
BseBI CCWGG 2 cut(s) 306, 411
BseGI GGATG 1 cut(s) 670
BseJI GATNNNNATC 1 cut(s) 768
BseLI CCNNNNNNNGG 2 cut(s) 60, 250
BseMII CTCAG 4 cut(s) 24, 87, 606, 788
BseNI ACTGG 2 cut(s) 605, 701
BseRI GAGGAG 4 cut(s) 186, 413, 416, 522
BseSI GKGCMC 1 cut(s) 547
BseXI GCAGC 5 cut(s) 110, 115, 118, 304, 447
BseYI CCCAGC 1 cut(s) 28
BsgI GTGCAG 1 cut(s) 852
Bsh1236I CGCG 1 cut(s) 458
BsiHKAI GWGCWC 3 cut(s) 302, 547, 851
BsiHKCI CYCGRG 1 cut(s) 895
BsiSI CCGG 3 cut(s) 61, 114, 727
BslI CCNNNNNNNGG 2 cut(s) 60, 250
BsmAI GTCTC 2 cut(s) 307, 664
BsoBI CYCGRG 1 cut(s) 895
Bsp119I TTCGAA 1 cut(s) 93
Bsp1286I GDGCHC 3 cut(s) 302, 547, 851
Bsp143I GATC 8 cut(s) 158, 214, 253, 279, 595, 763, 769, 853
BspACI CCGC 3 cut(s) 248, 558, 900
BspCNI CTCAG 4 cut(s) 25, 86, 605, 789
BspFNI CGCG 1 cut(s) 458
BspLI GGNNCC 1 cut(s) 955
BspOI GCTAGC 1 cut(s) 324
BspPI GGATC 3 cut(s) 222, 261, 777
BspT104I TTCGAA 1 cut(s) 93
BsrBI CCGCTC 1 cut(s) 900
BsrFI RCCGGY 1 cut(s) 726
BsrI ACTGG 2 cut(s) 605, 701
BssAI RCCGGY 1 cut(s) 726
BssMI GATC 8 cut(s) 158, 214, 253, 279, 595, 763, 769, 853
Bst2UI CCWGG 2 cut(s) 306, 411
Bst4CI ACNGT 2 cut(s) 105, 542
Bst6I CTCTTC 1 cut(s) 785
BstAPI GCANNNNNTGC 1 cut(s) 20
BstBI TTCGAA 1 cut(s) 93
BstC8I GCNNGC 3 cut(s) 80, 322, 460
BstDEI CTNAG 4 cut(s) 33, 73, 592, 797
BstF5I GGATG 1 cut(s) 670
BstFNI CGCG 1 cut(s) 458
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 8 cut(s) 161, 217, 256, 282, 598, 766, 772, 856
BstMAI GTCTC 2 cut(s) 307, 664
BstMBI GATC 8 cut(s) 158, 214, 253, 279, 595, 763, 769, 853
BstMWI GCNNNNNNNGC 5 cut(s) 20, 29, 38, 441, 551
BstNI CCWGG 2 cut(s) 306, 411
BstNSI RCATGY 1 cut(s) 647
BstSCI CCNGG 2 cut(s) 304, 409
BstSLI GKGCMC 1 cut(s) 547
BstUI CGCG 1 cut(s) 458
BstV1I GCAGC 5 cut(s) 110, 115, 118, 304, 447
BsuI GTATCC 1 cut(s) 881
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 670
BtsIMutI CAGTG 2 cut(s) 547, 612
Cac8I GCNNGC 3 cut(s) 80, 322, 460
CfoI GCGC 1 cut(s) 458
Cfr10I RCCGGY 1 cut(s) 726
Csp6I GTAC 3 cut(s) 106, 286, 465
CspCI CAANNNNNGTGG 2 cut(s) 557, 592
CviAII CATG 4 cut(s) 165, 245, 629, 644
CviQI GTAC 3 cut(s) 106, 286, 465
DdeI CTNAG 4 cut(s) 33, 73, 592, 797
DpnI GATC 8 cut(s) 160, 216, 255, 281, 597, 765, 771, 855
DpnII GATC 8 cut(s) 158, 214, 253, 279, 595, 763, 769, 853
Eam1104I CTCTTC 1 cut(s) 785
EarI CTCTTC 1 cut(s) 785
Ecl136II GAGCTC 2 cut(s) 300, 849
Eco24I GRGCYC 2 cut(s) 302, 851
Eco53kI GAGCTC 2 cut(s) 300, 849
Eco57I CTGAAG 2 cut(s) 505, 639
Eco88I CYCGRG 1 cut(s) 895
EcoICRI GAGCTC 2 cut(s) 300, 849
EcoRI GAATTC 1 cut(s) 331
EcoRII CCWGG 2 cut(s) 304, 409
EcoT38I GRGCYC 2 cut(s) 302, 851
FaeI CATG 4 cut(s) 168, 248, 632, 647
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FatI CATG 4 cut(s) 164, 244, 628, 643
Fnu4HI GCNGC 5 cut(s) 99, 129, 132, 293, 436
FokI GGATG 1 cut(s) 677
FriOI GRGCYC 2 cut(s) 302, 851
Fsp4HI GCNGC 5 cut(s) 99, 129, 132, 293, 436
FspBI CTAG 3 cut(s) 317, 321, 351
GlaI GCGC 1 cut(s) 457
GluI GCNGC 5 cut(s) 99, 129, 132, 293, 436
GsaI CCCAGC 1 cut(s) 32
GsuI CTGGAG 1 cut(s) 288
HapII CCGG 3 cut(s) 61, 114, 727
HhaI GCGC 1 cut(s) 458
Hin1II CATG 4 cut(s) 168, 248, 632, 647
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HinfI GANTC 3 cut(s) 71, 406, 842
HpaII CCGG 3 cut(s) 61, 114, 727
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 545
Hpy188III TCNNGA 4 cut(s) 188, 328, 767, 940
Hpy8I GTNNAC 1 cut(s) 545
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 64, 411
HpyCH4III ACNGT 2 cut(s) 105, 542
HpyCH4IV ACGT 3 cut(s) 87, 207, 927
HpyCH4V TGCA 7 cut(s) 14, 23, 545, 647, 833, 868, 965
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 29, 38, 441, 551
HpyF3I CTNAG 4 cut(s) 33, 73, 592, 797
HpySE526I ACGT 3 cut(s) 87, 207, 927
Hsp92II CATG 4 cut(s) 168, 248, 632, 647
HspAI GCGC 1 cut(s) 456
Kzo9I GATC 8 cut(s) 158, 214, 253, 279, 595, 763, 769, 853
LmnI GCTCC 3 cut(s) 139, 359, 854
Lsp1109I GCAGC 5 cut(s) 110, 115, 118, 304, 447
LweI GCATC 2 cut(s) 475, 945
MaeI CTAG 3 cut(s) 317, 321, 351
MaeII ACGT 3 cut(s) 87, 207, 927
MaeIII GTNAC 2 cut(s) 587, 639
MalI GATC 8 cut(s) 160, 216, 255, 281, 597, 765, 771, 855
MbiI CCGCTC 1 cut(s) 900
MboI GATC 8 cut(s) 158, 214, 253, 279, 595, 763, 769, 853
MhlI GDGCHC 3 cut(s) 302, 547, 851
MluCI AATT 3 cut(s) 180, 331, 616
MlyI GAGTC 2 cut(s) 65, 415
MmeI TCCRAC 3 cut(s) 161, 192, 681
MroXI GAANNNNTTC 1 cut(s) 53
MseI TTAA 2 cut(s) 692, 713
MslI CAYNNNNRTG 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 3 cut(s) 61, 114, 727
MspR9I CCNGG 2 cut(s) 306, 411
MvaI CCWGG 2 cut(s) 306, 411
MvnI CGCG 1 cut(s) 458
MwoI GCNNNNNNNGC 5 cut(s) 20, 29, 38, 441, 551
NdeII GATC 8 cut(s) 158, 214, 253, 279, 595, 763, 769, 853
NheI GCTAGC 1 cut(s) 320
NlaIII CATG 4 cut(s) 168, 248, 632, 647
NlaIV GGNNCC 1 cut(s) 955
NmeAIII GCCGAG 1 cut(s) 321
NmuCI GTSAC 2 cut(s) 587, 639
NspI RCATGY 1 cut(s) 647
NspV TTCGAA 1 cut(s) 93
PaeR7I CTCGAG 1 cut(s) 895
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 842
PflMI CCANNNNNTGG 1 cut(s) 250
PkrI GCNGC 5 cut(s) 100, 130, 133, 294, 437
PleI GAGTC 2 cut(s) 65, 414
PpsI GAGTC 2 cut(s) 65, 414
Psp124BI GAGCTC 2 cut(s) 302, 851
Psp6I CCWGG 2 cut(s) 304, 409
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 2 cut(s) 304, 409
PspN4I GGNNCC 1 cut(s) 955
PspXI VCTCGAGB 1 cut(s) 895
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 3 cut(s) 107, 287, 466
RsaNI GTAC 3 cut(s) 106, 286, 465
RseI CAYNNNNRTG 1 cut(s) 243
SacI GAGCTC 2 cut(s) 302, 851
SaqAI TTAA 2 cut(s) 692, 713
SatI GCNGC 5 cut(s) 99, 129, 132, 293, 436
Sau3AI GATC 8 cut(s) 158, 214, 253, 279, 595, 763, 769, 853
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 2 cut(s) 65, 415
ScrFI CCNGG 2 cut(s) 306, 411
SduI GDGCHC 3 cut(s) 302, 547, 851
SfaNI GCATC 2 cut(s) 475, 945
Sfr274I CTCGAG 1 cut(s) 895
SfuI TTCGAA 1 cut(s) 93
SlaI CTCGAG 1 cut(s) 895
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 895
SmoI CTYRAG 1 cut(s) 895
Sse9I AATT 3 cut(s) 180, 331, 616
SsiI CCGC 3 cut(s) 248, 558, 900
SspMI CTAG 3 cut(s) 317, 321, 351
SstI GAGCTC 2 cut(s) 302, 851
StyD4I CCNGG 2 cut(s) 304, 409
TaaI ACNGT 2 cut(s) 105, 542
TaiI ACGT 3 cut(s) 90, 210, 930
TaqI TCGA 4 cut(s) 93, 845, 861, 896
TasI AATT 3 cut(s) 180, 331, 616
TatI WGTACW 2 cut(s) 285, 464
TfiI GAWTC 1 cut(s) 842
Tru1I TTAA 2 cut(s) 692, 713
Tru9I TTAA 2 cut(s) 692, 713
TscAI CASTG 2 cut(s) 547, 612
TseFI GTSAC 2 cut(s) 587, 639
TseI GCWGC 5 cut(s) 98, 128, 131, 292, 435
Tsp45I GTSAC 2 cut(s) 587, 639
TspDTI ATGAA 6 cut(s) 161, 218, 284, 404, 666, 930
TspRI CASTG 2 cut(s) 547, 612
Van91I CCANNNNNTGG 1 cut(s) 250
VneI GTGCAC 1 cut(s) 543
XapI RAATTY 1 cut(s) 331
XceI RCATGY 1 cut(s) 647
XhoI CTCGAG 1 cut(s) 895
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 3 cut(s) 317, 321, 351
ZrmI AGTACT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.