AT1G69450

CSC1-like protein At1g69450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
26106790 .. 26110357
3568 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G69450.3

Sequence Viewer

Length: 2136 bp
ATGCTTTTGTCTGCACTTCTTATGTCTGTTGGGATAAACTCTTGCCTATGTGTATTACTCTTCATTCTTTACTCTGTACTGAGGAAGCAGCCACGAAACTACGAGGTTTTTTTACCTCGCAGACTCGCGAATGGGACGTATAAACGTAGACGCAACAAAGTAGCAAGGTATATACCTTCTCTTAAATGGATTTGGAAATCATGGAGACCAACAGAAAAGGAACTTATGGAATCATCTGGCTTGGATGGTGTTGTGTTTATGAGAATGATCACTTTTAGTTTGAAAGTGTTCTTGTTTGCTGGTATCATTGGTGTTTTTGTTCTCTTGCCTGTGAACTGCTTTGGAGATCAACTTACAGTGATTGATTACGCTGACTGGTCAGCCAATTCTTTGGATCTGTTTTCTGTTGCAAACCTCAAAGTCCGCTCACAATGGCTATGGGTTCACTTTGGAGCTATATATCTTGTGACTGTATTTGTTTGCTGTCTTCTTTACTTTGAATTCAGATATATTGCGTTGAAAAGGATTGAGCATTTCTATTCATCTAAACCTAAGCCAGAACAGTTTACAATATTGGTTCGAAATATCCCCTCTTCAGATGGAAGCAGTGTGAGCGACACTGTTGATAGGTTCTTTGGTGAAAATCATTCCTCTACCTATTTTTCTCATGTGGTTATCCATCGAACAAGTAAACTCCGAAGTGTCGTTGATAAGGCTAAAAAGTTATATAAAGAAGTGAAACATAAGAAGCCAGTTAAAAAGACGCCAATGAGATTCTTCAGTCGTAAAGACAATACTGAGGGTCACTATGAGAGTGTGTTACAGGAAATGGAACAGAACATACGATTGGGGCAAGCTGAAGTTTCAGCACCTGGAAAGGAAGTTCGAGCTGCTTTTGTATCATTCAAGTCTCGATATGGTGCTGCAACAGCACTCCACATGCCACAATCAATCAACCCTACTTACTGGCTCACAGAACCAGCACCAGAACCTCATGACGTACACTGGCCTTTCTTCTCTGCATCATTTATGCAGAAATGGCTTGCTAAAATTCTGGTTGTGTTCGCTTGTCTCCTCCTTACTATCTTATTTCTTGTTCCAGTAGTACTTGTCCAAGGTCTCACCAACCTTCCTGCACTAGAATTTATGTTCCCGTTCTTGTCATTGATCCTATCAATGAAAGTTGTAAGTCAAATAATAACTGGATACCTTCCAAGTCTTATACTTCAGACATCTCTCAAAGTCGTACCTCCAACCATGGAGTTTCTCTCTTCTATCCAAGGGCACATTTGCCACAGCGATATACAAAAGAGTGCTTGTAACAAGGTGATCTGGTTCACTATATGGAATGTGTTTTTCGCAACTGTTTTCTCTGGATCAGCCTTCTACAAGCTTTCTGTAATTCTCGATCCAAAGCAAATCCCGCTCAAGTTGGCTGTGGCTGTTCCAGCTCAGGCTTCGTTTTTCATCGCTTATGTTGTGACAACAGGATGGACAGATACTCTGACTGAACTCTTCCGTGTAGTTCCCTTCATGGTCAGTTACATAAAAAGATCTTTTGAACCGTCAGATGAAAATGAATTTGTTGTACCGCCAATGCGGTACCACAGAGACACTCCTAGAGTTCTCTTCTTTGGGCTTCTTGGGATTACATACTTCTTCTTAGCTCCATTGATTCTTCCTTTCATCCTTTTATACTTTATCCTTGCATACATCATCTACCGAAACCAGTTTATGAATGTGTATGCTCCAAAGTTTGATACGGGTGGAATGTTTTGGCCAATGATACACTATACGATGATATTCTCTCTTGTACTTATGCAAGCAATTGCAATCGGTCTATTTGCGCTAAAGAAGATGGAACTAGCTACATACTTGCTTGTCCCTCTTCCCGTTTTTACTCTTCTCTTTAACGAGTTCTGTCGTAAACGCTTCATGCCTATATTCACTGATTATCCTGCTGAGGTGTTGACAAAGAGAGATAAGGAAGATAGAAACGATCCAACAATGCCCGAGTTTTACAATAACTTGGTCAGTGCGTACAAAGATCCTGCTCTGCTCCCACTTAGATTCTCAGGATCAGGAAGCAGAAACGATAGCCTCACTAGTCCTCTTCTCTCTTTTAGTGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

711

Amino Acids

81.79

Weight (kDa)

9.45

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RSN1_TM PF13967 5 - 167 1.5e-32 Late exocytosis, associated with Golgi transport
PHM7_cyt PF14703 188 - 337 3.1e-28 Cytosolic domain of 10TM putative phosphate transporter
RSN1_7TM PF02714 350 - 579 8.3e-58 Calcium-dependent channel, 7TM region, putative phosphate
RSN1_7TM PF02714 601 - 642 1.7e-08 Calcium-dependent channel, 7TM region, putative phosphate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1602
AccB1I GGYRCC 1 cut(s) 1602
AccBSI CCGCTC 2 cut(s) 426, 1426
AccI GTMKAC 1 cut(s) 148
AccII CGCG 1 cut(s) 128
AciI CCGC 4 cut(s) 424, 1424, 1592, 1600
AclWI GGATC 7 cut(s) 402, 1162, 1384, 1403, 1994, 2042, 2086
AcoI YGGCCR 1 cut(s) 1778
AcsI RAATTY 4 cut(s) 500, 1050, 1142, 1580
AcuI CTGAAG 4 cut(s) 579, 763, 879, 1211
AcyI GRCGYC 1 cut(s) 764
AfaI GTAC 8 cut(s) 78, 1002, 1107, 1248, 1590, 1604, 1815, 2042
AgsI TTSAA 5 cut(s) 283, 500, 520, 907, 1562
AhlI ACTAGT 1 cut(s) 2105
AjnI CCWGG 1 cut(s) 871
AjuI GAANNNNNNNTTGG 2 cut(s) 830, 862
AloI GAACNNNNNNTCC 2 cut(s) 867, 899
AluBI AGCT 7 cut(s) 455, 857, 890, 1393, 1451, 1667, 1868
AluI AGCT 7 cut(s) 455, 857, 890, 1393, 1451, 1667, 1868
Alw26I GTCTC 5 cut(s) 199, 915, 1076, 1124, 1605
AlwI GGATC 7 cut(s) 402, 1162, 1384, 1403, 1994, 2042, 2086
AlwNI CAGNNNCTG 1 cut(s) 872
Ama87I CYCGRG 1 cut(s) 2012
AoxI GGCC 2 cut(s) 1007, 1778
ApeKI GCWGC 3 cut(s) 88, 890, 923
ApoI RAATTY 4 cut(s) 500, 1050, 1142, 1580
Asp700I GAANNNNTTC 1 cut(s) 287
Asp718I GGTACC 1 cut(s) 1602
AspLEI GCGC 1 cut(s) 1849
AsuHPI GGTGA 3 cut(s) 650, 1114, 1339
AsuII TTCGAA 1 cut(s) 580
AvaI CYCGRG 1 cut(s) 2012
BaeGI GKGCMC 1 cut(s) 1287
BalI TGGCCA 1 cut(s) 1780
BanI GGYRCC 1 cut(s) 1602
BbsI GAAGAC 1 cut(s) 479
BbvCI CCTCAGC 1 cut(s) 1962
BbvI GCAGC 3 cut(s) 100, 877, 910
BccI CCATC 5 cut(s) 239, 593, 687, 1485, 1852
BciT130I CCWGG 1 cut(s) 873
BciVI GTATCC 1 cut(s) 1199
BclI TGATCA 1 cut(s) 267
BcoDI GTCTC 5 cut(s) 199, 915, 1076, 1124, 1605
BcuI ACTAGT 1 cut(s) 2105
BfaI CTAG 4 cut(s) 1139, 1620, 1865, 2106
BfuI GTATCC 1 cut(s) 1199
BglII AGATCT 1 cut(s) 1553
BisI GCNGC 3 cut(s) 89, 891, 924
BlsI GCNGC 3 cut(s) 90, 892, 925
BmcAI AGTACT 1 cut(s) 1107
Bme1390I CCNGG 1 cut(s) 873
BmeT110I CYCGRG 1 cut(s) 2012
BmiI GGNNCC 1 cut(s) 1604
BmrFI CCNGG 1 cut(s) 873
BmsI GCATC 1 cut(s) 1031
BpiI GAAGAC 1 cut(s) 479
BplI GAGNNNNNCTC 2 cut(s) 1253, 1285
Bpu10I CCTNAGC 3 cut(s) 552, 1452, 1962
Bpu14I TTCGAA 1 cut(s) 580
BpuEI CTTGAG 1 cut(s) 1412
BsaHI GRCGYC 1 cut(s) 764
BsaI GGTCTC 2 cut(s) 199, 1124
BsaJI CCNNGG 3 cut(s) 1114, 1257, 1279
Bse1I ACTGG 7 cut(s) 380, 752, 971, 1010, 1100, 1207, 1729
BseBI CCWGG 1 cut(s) 873
BseDI CCNNGG 3 cut(s) 1114, 1257, 1279
BseGI GGATG 3 cut(s) 250, 1496, 1686
BseMII CTCAG 5 cut(s) 71, 789, 1466, 1953, 2088
BseNI ACTGG 7 cut(s) 380, 752, 971, 1010, 1100, 1207, 1729
BseRI GAGGAG 1 cut(s) 1064
BseSI GKGCMC 1 cut(s) 1287
BseXI GCAGC 3 cut(s) 100, 877, 910
BsgI GTGCAG 1 cut(s) 1119
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 2 cut(s) 1009, 1780
BshNI GGYRCC 1 cut(s) 1602
BsiHKCI CYCGRG 1 cut(s) 2012
BslFI GGGAC 2 cut(s) 148, 1868
BsmAI GTCTC 5 cut(s) 199, 915, 1076, 1124, 1605
BsmFI GGGAC 2 cut(s) 148, 1868
BsnI GGCC 2 cut(s) 1009, 1780
Bso31I GGTCTC 2 cut(s) 199, 1124
BsoBI CYCGRG 1 cut(s) 2012
Bsp119I TTCGAA 1 cut(s) 580
Bsp1286I GDGCHC 1 cut(s) 1287
Bsp19I CCATGG 1 cut(s) 1257
Bsp68I TCGCGA 1 cut(s) 128
BspACI CCGC 4 cut(s) 424, 1424, 1592, 1600
BspANI GGCC 2 cut(s) 1009, 1780
BspCNI CTCAG 5 cut(s) 72, 790, 1465, 1954, 2087
BspFNI CGCG 1 cut(s) 128
BspHI TCATGA 1 cut(s) 994
BspLI GGNNCC 1 cut(s) 1604
BspPI GGATC 7 cut(s) 402, 1162, 1384, 1403, 1994, 2042, 2086
BspT104I TTCGAA 1 cut(s) 580
BspT107I GGYRCC 1 cut(s) 1602
BspTNI GGTCTC 2 cut(s) 199, 1124
BsrBI CCGCTC 2 cut(s) 426, 1426
BsrI ACTGG 7 cut(s) 380, 752, 971, 1010, 1100, 1207, 1729
BssECI CCNNGG 3 cut(s) 1114, 1257, 1279
BssNI GRCGYC 1 cut(s) 764
BssT1I CCWWGG 3 cut(s) 1114, 1257, 1279
Bst2UI CCWGG 1 cut(s) 873
Bst4CI ACNGT 6 cut(s) 358, 472, 564, 622, 1366, 1566
Bst6I CTCTTC 8 cut(s) 65, 598, 1276, 1520, 1634, 1893, 1908, 2118
BstACI GRCGYC 1 cut(s) 764
BstBI TTCGAA 1 cut(s) 580
BstC8I GCNNGC 3 cut(s) 855, 1044, 1824
BstDEI CTNAG 8 cut(s) 80, 552, 798, 1452, 1663, 1962, 2066, 2074
BstDSI CCRYGG 1 cut(s) 1257
BstF5I GGATG 3 cut(s) 250, 1496, 1686
BstFNI CGCG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 1849
BstMAI GTCTC 5 cut(s) 199, 915, 1076, 1124, 1605
BstMWI GCNNNNNNNGC 5 cut(s) 612, 929, 1039, 1423, 1448
BstNI CCWGG 1 cut(s) 873
BstNSI RCATGY 1 cut(s) 943
BstSCI CCNGG 1 cut(s) 871
BstSLI GKGCMC 1 cut(s) 1287
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 3 cut(s) 100, 877, 910
BstV2I GAAGAC 1 cut(s) 479
BstX2I RGATCY 3 cut(s) 394, 1553, 2047
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 3 cut(s) 394, 1553, 2047
BsuI GTATCC 1 cut(s) 1199
BsuRI GGCC 2 cut(s) 1009, 1780
BtgI CCRYGG 1 cut(s) 1257
BtgZI GCGATG 1 cut(s) 1453
BtsCI GGATG 3 cut(s) 250, 1496, 1686
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 6 cut(s) 363, 613, 618, 1003, 1947, 2041
BtuMI TCGCGA 1 cut(s) 128
Cac8I GCNNGC 3 cut(s) 855, 1044, 1824
CaiI CAGNNNCTG 1 cut(s) 872
CciI TCATGA 1 cut(s) 994
CfoI GCGC 1 cut(s) 1849
CseI GACGC 2 cut(s) 159, 772
Csp6I GTAC 8 cut(s) 77, 1001, 1106, 1247, 1589, 1603, 1814, 2041
CviAII CATG 7 cut(s) 201, 668, 940, 995, 1258, 1534, 1936
CviQI GTAC 8 cut(s) 77, 1001, 1106, 1247, 1589, 1603, 1814, 2041
DdeI CTNAG 8 cut(s) 80, 552, 798, 1452, 1663, 1962, 2066, 2074
EaeI YGGCCR 1 cut(s) 1778
Eam1104I CTCTTC 8 cut(s) 65, 598, 1276, 1520, 1634, 1893, 1908, 2118
EarI CTCTTC 8 cut(s) 65, 598, 1276, 1520, 1634, 1893, 1908, 2118
Eco130I CCWWGG 3 cut(s) 1114, 1257, 1279
Eco31I GGTCTC 2 cut(s) 199, 1124
Eco57I CTGAAG 4 cut(s) 579, 763, 879, 1211
Eco88I CYCGRG 1 cut(s) 2012
EcoRI GAATTC 1 cut(s) 500
EcoRII CCWGG 1 cut(s) 871
EcoT14I CCWWGG 3 cut(s) 1114, 1257, 1279
ErhI CCWWGG 3 cut(s) 1114, 1257, 1279
FaeI CATG 7 cut(s) 204, 671, 943, 998, 1261, 1537, 1939
FaqI GGGAC 2 cut(s) 148, 1868
FatI CATG 7 cut(s) 200, 667, 939, 994, 1257, 1533, 1935
FauI CCCGC 1 cut(s) 1431
FbaI TGATCA 1 cut(s) 267
FblI GTMKAC 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 89, 891, 924
FokI GGATG 3 cut(s) 257, 1503, 1673
Fsp4HI GCNGC 3 cut(s) 89, 891, 924
FspBI CTAG 4 cut(s) 1139, 1620, 1865, 2106
GlaI GCGC 1 cut(s) 1848
GluI GCNGC 3 cut(s) 89, 891, 924
HaeIII GGCC 2 cut(s) 1009, 1780
HgaI GACGC 2 cut(s) 159, 772
HhaI GCGC 1 cut(s) 1849
Hin1I GRCGYC 1 cut(s) 764
Hin1II CATG 7 cut(s) 204, 671, 943, 998, 1261, 1537, 1939
Hin6I GCGC 1 cut(s) 1847
HinP1I GCGC 1 cut(s) 1847
HincII GTYRAC 1 cut(s) 1971
HindII GTYRAC 1 cut(s) 1971
HindIII AAGCTT 1 cut(s) 1391
HinfI GANTC 5 cut(s) 123, 230, 774, 1675, 2070
HphI GGTGA 3 cut(s) 650, 1114, 1339
Hpy166II GTNNAC 9 cut(s) 149, 334, 445, 567, 692, 1003, 1338, 1928, 1971
Hpy188I TCNGA 6 cut(s) 506, 598, 698, 1230, 1506, 1570
Hpy188III TCNNGA 7 cut(s) 127, 912, 995, 1374, 1406, 2076, 2082
Hpy8I GTNNAC 9 cut(s) 149, 334, 445, 567, 692, 1003, 1338, 1928, 1971
HpyAV CCTTC 5 cut(s) 186, 1139, 1220, 1393, 1540
HpyCH4III ACNGT 6 cut(s) 358, 472, 564, 622, 1366, 1566
HpyCH4IV ACGT 3 cut(s) 137, 145, 999
HpyCH4V TGCA 9 cut(s) 14, 410, 926, 1022, 1033, 1136, 1709, 1822, 1832
HpyF10VI GCNNNNNNNGC 5 cut(s) 612, 929, 1039, 1423, 1448
HpyF3I CTNAG 8 cut(s) 80, 552, 798, 1452, 1663, 1962, 2066, 2074
HpySE526I ACGT 3 cut(s) 137, 145, 999
Hsp92I GRCGYC 1 cut(s) 764
Hsp92II CATG 7 cut(s) 204, 671, 943, 998, 1261, 1537, 1939
HspAI GCGC 1 cut(s) 1847
KpnI GGTACC 1 cut(s) 1606
Ksp22I TGATCA 1 cut(s) 267
LmnI GCTCC 4 cut(s) 452, 1672, 1753, 2064
Lsp1109I GCAGC 3 cut(s) 100, 877, 910
LweI GCATC 1 cut(s) 1031
MaeI CTAG 4 cut(s) 1139, 1620, 1865, 2106
MaeII ACGT 3 cut(s) 137, 145, 999
MaeIII GTNAC 6 cut(s) 466, 803, 819, 1319, 1480, 1541
MbiI CCGCTC 2 cut(s) 426, 1426
MfeI CAATTG 1 cut(s) 1827
MflI RGATCY 3 cut(s) 394, 1553, 2047
MhlI GDGCHC 1 cut(s) 1287
MlsI TGGCCA 1 cut(s) 1780
MluCI AATT 7 cut(s) 385, 500, 1050, 1142, 1401, 1580, 1827
MluNI TGGCCA 1 cut(s) 1780
MlyI GAGTC 1 cut(s) 117
MmeI TCCRAC 2 cut(s) 1277, 2027
Mox20I TGGCCA 1 cut(s) 1780
MroXI GAANNNNTTC 1 cut(s) 287
MscI TGGCCA 1 cut(s) 1780
MseI TTAA 3 cut(s) 183, 756, 1911
Msp20I TGGCCA 1 cut(s) 1780
MspR9I CCNGG 1 cut(s) 873
MunI CAATTG 1 cut(s) 1827
MvaI CCWGG 1 cut(s) 873
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 5 cut(s) 612, 929, 1039, 1423, 1448
NcoI CCATGG 1 cut(s) 1257
NlaIII CATG 7 cut(s) 204, 671, 943, 998, 1261, 1537, 1939
NlaIV GGNNCC 1 cut(s) 1604
NmuCI GTSAC 3 cut(s) 466, 803, 1480
NruI TCGCGA 1 cut(s) 128
NspI RCATGY 1 cut(s) 943
NspV TTCGAA 1 cut(s) 580
PagI TCATGA 1 cut(s) 994
PdmI GAANNNNTTC 1 cut(s) 287
PfeI GAWTC 4 cut(s) 230, 774, 1675, 2070
PkrI GCNGC 3 cut(s) 90, 892, 925
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 871
PspGI CCWGG 1 cut(s) 871
PspN4I GGNNCC 1 cut(s) 1604
PsrI GAACNNNNNNTAC 2 cut(s) 825, 857
PstNI CAGNNNCTG 1 cut(s) 872
PsuI RGATCY 3 cut(s) 394, 1553, 2047
RruI TCGCGA 1 cut(s) 128
RsaI GTAC 8 cut(s) 78, 1002, 1107, 1248, 1590, 1604, 1815, 2042
RsaNI GTAC 8 cut(s) 77, 1001, 1106, 1247, 1589, 1603, 1814, 2041
SaqAI TTAA 3 cut(s) 183, 756, 1911
SatI GCNGC 3 cut(s) 89, 891, 924
ScaI AGTACT 1 cut(s) 1107
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 873
SduI GDGCHC 1 cut(s) 1287
SfaNI GCATC 1 cut(s) 1031
SfuI TTCGAA 1 cut(s) 580
SmlI CTYRAG 1 cut(s) 1427
SmoI CTYRAG 1 cut(s) 1427
SpeI ACTAGT 1 cut(s) 2105
Sse9I AATT 7 cut(s) 385, 500, 1050, 1142, 1401, 1580, 1827
SsiI CCGC 4 cut(s) 424, 1424, 1592, 1600
SspI AATATT 1 cut(s) 573
SspMI CTAG 4 cut(s) 1139, 1620, 1865, 2106
StyD4I CCNGG 1 cut(s) 871
StyI CCWWGG 3 cut(s) 1114, 1257, 1279
TaaI ACNGT 6 cut(s) 358, 472, 564, 622, 1366, 1566
TaiI ACGT 3 cut(s) 140, 148, 1002
TaqI TCGA 5 cut(s) 580, 682, 886, 913, 1407
TaqII GACCGA 1 cut(s) 1826
TasI AATT 7 cut(s) 385, 500, 1050, 1142, 1401, 1580, 1827
TatI WGTACW 3 cut(s) 76, 1105, 1813
TfiI GAWTC 4 cut(s) 230, 774, 1675, 2070
Tru1I TTAA 3 cut(s) 183, 756, 1911
Tru9I TTAA 3 cut(s) 183, 756, 1911
TscAI CASTG 6 cut(s) 363, 613, 625, 1010, 1954, 2041
TseFI GTSAC 3 cut(s) 466, 803, 1480
TseI GCWGC 3 cut(s) 88, 890, 923
Tsp45I GTSAC 3 cut(s) 466, 803, 1480
TspGWI ACGGA 1 cut(s) 1508
TspRI CASTG 6 cut(s) 363, 613, 625, 1010, 1954, 2041
XapI RAATTY 4 cut(s) 500, 1050, 1142, 1580
XceI RCATGY 1 cut(s) 943
XmiI GTMKAC 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 4 cut(s) 1139, 1620, 1865, 2106
ZrmI AGTACT 1 cut(s) 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.