Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002236.1

Orthogroup ID

OG0005229

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1632

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002236.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgctcgtctcggcgctggtgacgtcactggccataaactccgggctgtgcgttctcttcttcacgctctactccatcctgagaaaacagccgagcaactccgaggtctacataccgcgagttttggccgaaggcgggtacaagaagagtagccatttcaatctagagaggctgattccttctcccgattggctccgaagggcctggaagctcaccgaggacgatttgctcgcggcgtcgggtttggacgccgtggtttttatgcggctcatcaatttcagcctgagagtgtttctgttcgccggagttattggcgttttcgtgctgcttccggtgaactgctccggcgatgcgctcgagtacgttgacttcgccgatctgtctaataattcattggatgtgttcagtatttcaaatgttgccagcggctcaagcttgttatggattcacttttcggcggtgtaccttgtcaccatctttatctgctgtctactctattatgaatatagatatatctgtgaaaagaggaccagttattttcttgcatccaagcctcaaccacatcagttcaccatcctagttcgcagcattcctgttcctgtagggagcagcgtcagtgatagtgttgagagattctttagcgagtatcatccttctacatatctgtcacatagtgttgttcgtcgaacaaacaaacttcagaatctcattagtgatgcaaaaaaattgtatagcagacttgttcacttgaagtcagatcccaataagcaaaagtataaacgttccggtacttttgggttgttcggacccaaggttaatctacaagatcattacaaaaagacacttgaggatatagaggagaatgtgagattggagcaatcagaggtttcgttagcaggagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

301

Amino Acids

34.09

Weight (kDa)

8.68

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69450 AT1G69450 AT1G69450
fragaria_vesca	FvH4_4g30740 FvH4_4g30740
malus_domestica	MD13G1068300.v1.1 MD16G1067100.v1.1
prunus_persica	Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1
pyrus_communis	pycom13g06010 pycom16g05850
rosa_chinensis	RchiOBHm_Chr4g0439131
rosa_laevigata	RLG00000006295
rosa_multiflora	Rmu_sc0002236.1_g000001 Rmu_sc0005346.1_g000005 Rmu_sc0027506.1_g000002
rosa_roxburghii	Rroxscaffold_5G00380120
rosa_rugosa	Rorug04G0315900 Rorug04G0315900
rosa_samantha	Rh4AG366800 Rh4BG378300 Rh4CG392400 Rh4CG392500 Rh4DG372900
rosa_wichuraiana	Rw0G007500 Rw0G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
AccI	GTMKAC	2 cut(s)	108, 490
AccII	CGCG	2 cut(s)	118, 233
AciI	CCGC	6 cut(s)	116, 135, 233, 265, 426, 458
AclI	AACGTT	1 cut(s)	781
AclWI	GGATC	1 cut(s)	752
AcoI	YGGCCR	2 cut(s)	30, 126
AcuI	CTGAAG	1 cut(s)	683
AcyI	GRCGYC	3 cut(s)	23, 236, 249
AdeI	CACNNNGTG	1 cut(s)	674
AfaI	GTAC	4 cut(s)	140, 362, 464, 790
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	3 cut(s)	160, 414, 751
AjnI	CCWGG	1 cut(s)	203
AjuI	GAANNNNNNNTTGG	2 cut(s)	854, 886
AluBI	AGCT	2 cut(s)	211, 435
AluI	AGCT	2 cut(s)	211, 435
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	752
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	3 cut(s)	30, 126, 201
ApeKI	GCWGC	3 cut(s)	325, 585, 609
AspLEI	GCGC	2 cut(s)	16, 355
AspS9I	GGNCC	3 cut(s)	201, 528, 806
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	5 cut(s)	31, 205, 346, 463, 562
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	2 cut(s)	528, 806
BalI	TGGCCA	1 cut(s)	32
BarI	GAAGNNNNNNTAC	2 cut(s)	353, 385
BbvI	GCAGC	3 cut(s)	312, 597, 621
BccI	CCATC	3 cut(s)	83, 482, 581
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	2 cut(s)	164, 578
BfmI	CTRYAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	17
BisI	GCNGC	6 cut(s)	234, 266, 326, 427, 586, 610
BlsI	GCNGC	6 cut(s)	235, 267, 327, 428, 587, 611
Bme1390I	CCNGG	2 cut(s)	43, 205
Bme18I	GGWCC	2 cut(s)	528, 806
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	3 cut(s)	201, 528, 806
BmiI	GGNNCC	2 cut(s)	194, 808
BmrFI	CCNGG	2 cut(s)	43, 205
BmsI	GCATC	3 cut(s)	340, 554, 706
BpuEI	CTTGAG	2 cut(s)	415, 866
BpuMI	CCSGG	1 cut(s)	43
BsaHI	GRCGYC	3 cut(s)	23, 236, 249
BsaJI	CCNNGG	4 cut(s)	102, 216, 252, 810
BsaWI	WCCGGW	2 cut(s)	331, 785
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	33, 531
BseBI	CCWGG	1 cut(s)	205
BseDI	CCNNGG	4 cut(s)	102, 216, 252, 810
BseGI	GGATG	5 cut(s)	75, 403, 545, 573, 649
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	71, 275
BseNI	ACTGG	2 cut(s)	33, 531
BseRI	GAGGAG	1 cut(s)	872
BseXI	GCAGC	3 cut(s)	312, 597, 621
Bsh1236I	CGCG	2 cut(s)	118, 233
BshFI	GGCC	3 cut(s)	32, 128, 203
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	5 cut(s)	42, 303, 332, 345, 786
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	13
BsmBI	CGTCTC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	588
BsnI	GGCC	3 cut(s)	32, 128, 203
BsoBI	CYCGRG	1 cut(s)	356
Bsp143I	GATC	3 cut(s)	376, 757, 826
BspACI	CCGC	6 cut(s)	116, 135, 233, 265, 426, 458
BspANI	GGCC	3 cut(s)	32, 128, 203
BspCNI	CTCAG	2 cut(s)	72, 276
BspFNI	CGCG	2 cut(s)	118, 233
BspLI	GGNNCC	2 cut(s)	194, 808
BspPI	GGATC	1 cut(s)	752
BsrI	ACTGG	2 cut(s)	33, 531
BssECI	CCNNGG	4 cut(s)	102, 216, 252, 810
BssMI	GATC	3 cut(s)	376, 757, 826
BssNI	GRCGYC	3 cut(s)	23, 236, 249
BssT1I	CCWWGG	1 cut(s)	810
Bst2UI	CCWGG	1 cut(s)	205
Bst6I	CTCTTC	2 cut(s)	62, 140
BstACI	GRCGYC	3 cut(s)	23, 236, 249
BstC8I	GCNNGC	2 cut(s)	231, 424
BstDEI	CTNAG	2 cut(s)	80, 284
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	5 cut(s)	75, 403, 545, 573, 649
BstFNI	CGCG	2 cut(s)	118, 233
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	2 cut(s)	16, 355
BstKTI	GATC	3 cut(s)	379, 760, 829
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	3 cut(s)	376, 757, 826
BstMWI	GCNNNNNNNGC	1 cut(s)	432
BstNI	CCWGG	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	41, 203
BstSFI	CTRYAG	1 cut(s)	600
BstUI	CGCG	2 cut(s)	118, 233
BstV1I	GCAGC	3 cut(s)	312, 597, 621
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
BsuRI	GGCC	3 cut(s)	32, 128, 203
BtgI	CCRYGG	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	363
BtsCI	GGATG	5 cut(s)	75, 403, 545, 573, 649
BtsIMutI	CAGTG	2 cut(s)	26, 622
Cac8I	GCNNGC	2 cut(s)	231, 424
CfoI	GCGC	2 cut(s)	16, 355
Cfr13I	GGNCC	3 cut(s)	201, 528, 806
CseI	GACGC	3 cut(s)	225, 257, 601
Csp6I	GTAC	4 cut(s)	139, 361, 463, 789
CviQI	GTAC	4 cut(s)	139, 361, 463, 789
DdeI	CTNAG	2 cut(s)	80, 284
DpnI	GATC	3 cut(s)	378, 759, 828
DpnII	GATC	3 cut(s)	376, 757, 826
DraIII	CACNNNGTG	1 cut(s)	674
EaeI	YGGCCR	2 cut(s)	30, 126
Eam1104I	CTCTTC	2 cut(s)	62, 140
EarI	CTCTTC	2 cut(s)	62, 140
Eco130I	CCWWGG	1 cut(s)	810
Eco47I	GGWCC	2 cut(s)	528, 806
Eco57I	CTGAAG	1 cut(s)	683
Eco88I	CYCGRG	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	810
ErhI	CCWWGG	1 cut(s)	810
Esp3I	CGTCTC	1 cut(s)	13
FauI	CCCGC	1 cut(s)	128
FblI	GTMKAC	2 cut(s)	108, 490
Fnu4HI	GCNGC	6 cut(s)	234, 266, 326, 427, 586, 610
FokI	GGATG	5 cut(s)	62, 410, 532, 560, 636
Fsp4HI	GCNGC	6 cut(s)	234, 266, 326, 427, 586, 610
FspBI	CTAG	2 cut(s)	164, 578
GlaI	GCGC	2 cut(s)	15, 354
GluI	GCNGC	6 cut(s)	234, 266, 326, 427, 586, 610
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	3 cut(s)	32, 128, 203
HapII	CCGG	5 cut(s)	42, 303, 332, 345, 786
HgaI	GACGC	3 cut(s)	225, 257, 601
HhaI	GCGC	2 cut(s)	16, 355
Hin1I	GRCGYC	3 cut(s)	23, 236, 249
Hin6I	GCGC	2 cut(s)	14, 353
HinP1I	GCGC	2 cut(s)	14, 353
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	4 cut(s)	175, 445, 633, 703
HpaII	CCGG	5 cut(s)	42, 303, 332, 345, 786
HphI	GGTGA	5 cut(s)	31, 205, 346, 463, 562
Hpy166II	GTNNAC	7 cut(s)	109, 337, 367, 463, 491, 570, 745
Hpy188I	TCNGA	6 cut(s)	103, 197, 702, 757, 806, 883
Hpy188III	TCNNGA	3 cut(s)	79, 164, 185
Hpy8I	GTNNAC	7 cut(s)	109, 337, 367, 463, 491, 570, 745
Hpy99I	CGWCG	2 cut(s)	241, 687
HpyAV	CCTTC	4 cut(s)	125, 189, 192, 663
HpyCH4IV	ACGT	3 cut(s)	23, 363, 781
HpyCH4V	TGCA	2 cut(s)	545, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	432
HpyF3I	CTNAG	2 cut(s)	80, 284
HpySE526I	ACGT	3 cut(s)	23, 363, 781
Hsp92I	GRCGYC	3 cut(s)	23, 236, 249
HspAI	GCGC	2 cut(s)	14, 353
Kzo9I	GATC	3 cut(s)	376, 757, 826
LmnI	GCTCC	4 cut(s)	198, 347, 606, 874
Lsp1109I	GCAGC	3 cut(s)	312, 597, 621
LweI	GCATC	3 cut(s)	340, 554, 706
MaeI	CTAG	2 cut(s)	164, 578
MaeII	ACGT	3 cut(s)	23, 363, 781
MaeIII	GTNAC	4 cut(s)	19, 24, 469, 666
MalI	GATC	3 cut(s)	378, 759, 828
MboI	GATC	3 cut(s)	376, 757, 826
MboII	GAAGA	3 cut(s)	49, 52, 157
MflI	RGATCY	1 cut(s)	757
MlsI	TGGCCA	1 cut(s)	32
MluCI	AATT	3 cut(s)	274, 388, 725
MluNI	TGGCCA	1 cut(s)	32
MnlI	CCTC	8 cut(s)	97, 162, 211, 519, 564, 841, 850, 877
Mox20I	TGGCCA	1 cut(s)	32
MscI	TGGCCA	1 cut(s)	32
MseI	TTAA	1 cut(s)	816
Msp20I	TGGCCA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	426
MspI	CCGG	5 cut(s)	42, 303, 332, 345, 786
MspR9I	CCNGG	2 cut(s)	43, 205
Mva1269I	GAATGC	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	205
MvnI	CGCG	2 cut(s)	118, 233
MwoI	GCNNNNNNNGC	1 cut(s)	432
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	3 cut(s)	376, 757, 826
NlaIV	GGNNCC	2 cut(s)	194, 808
NmeAIII	GCCGAG	1 cut(s)	117
NmuCI	GTSAC	4 cut(s)	19, 24, 469, 666
PaeR7I	CTCGAG	1 cut(s)	356
PctI	GAATGC	1 cut(s)	588
PfeI	GAWTC	4 cut(s)	175, 445, 633, 703
PkrI	GCNGC	6 cut(s)	235, 267, 327, 428, 587, 611
Psp1406I	AACGTT	1 cut(s)	781
Psp6I	CCWGG	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	194, 808
PspPI	GGNCC	3 cut(s)	201, 528, 806
PspXI	VCTCGAGB	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	757
RsaI	GTAC	4 cut(s)	140, 362, 464, 790
RsaNI	GTAC	4 cut(s)	139, 361, 463, 789
SaqAI	TTAA	1 cut(s)	816
SatI	GCNGC	6 cut(s)	234, 266, 326, 427, 586, 610
Sau3AI	GATC	3 cut(s)	376, 757, 826
Sau96I	GGNCC	3 cut(s)	201, 528, 806
ScrFI	CCNGG	2 cut(s)	43, 205
SetI	ASST	9 cut(s)	26, 108, 213, 366, 437, 468, 784, 816, 888
SfaNI	GCATC	3 cut(s)	340, 554, 706
SfcI	CTRYAG	1 cut(s)	600
Sfr274I	CTCGAG	1 cut(s)	356
SinI	GGWCC	2 cut(s)	528, 806
SlaI	CTCGAG	1 cut(s)	356
SmlI	CTYRAG	3 cut(s)	356, 430, 845
SmoI	CTYRAG	3 cut(s)	356, 430, 845
Sse9I	AATT	3 cut(s)	274, 388, 725
SsiI	CCGC	6 cut(s)	116, 135, 233, 265, 426, 458
SspMI	CTAG	2 cut(s)	164, 578
StyD4I	CCNGG	2 cut(s)	41, 203
StyI	CCWWGG	1 cut(s)	810
TaiI	ACGT	3 cut(s)	26, 366, 784
TaqI	TCGA	2 cut(s)	357, 685
TasI	AATT	3 cut(s)	274, 388, 725
TauI	GCSGC	3 cut(s)	236, 268, 429
TfiI	GAWTC	4 cut(s)	175, 445, 633, 703
Tru1I	TTAA	1 cut(s)	816
Tru9I	TTAA	1 cut(s)	816
TscAI	CASTG	2 cut(s)	33, 622
TseFI	GTSAC	4 cut(s)	19, 24, 469, 666
TseI	GCWGC	3 cut(s)	325, 585, 609
Tsp45I	GTSAC	4 cut(s)	19, 24, 469, 666
TspDTI	ATGAA	2 cut(s)	381, 516
TspRI	CASTG	2 cut(s)	33, 622
VpaK11BI	GGWCC	2 cut(s)	528, 806
XbaI	TCTAGA	1 cut(s)	163
XhoI	CTCGAG	1 cut(s)	356
XmiI	GTMKAC	2 cut(s)	108, 490
XspI	CTAG	2 cut(s)	164, 578
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.