Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005346.1

Orthogroup ID

OG0005229

Physical Location & Seq

Genomic Coordinates Reverse (-)

20950 .. 21999

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005346.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgaaaagaccttttactgacagtaaagatgatgaacttgaagttccagccattccttaccatagtcacatgccaagaattctcttttttgtacttcttggtatcacatacttctttctagctccactaattctgcccttcctattggtgtacctctgtcttggatacataatctatcgtaatcagttcataaatgtatatgcgcctcggtatgaaactgcggggaagttctggccaattgctcacaattcagttatattttctctggtacttatgcatgctattgcagttggagtctttacactgaagagtatccctgtagcatcaaccctaactttccctcttcctgtgttcacacttctttttaatgagtactgccggaaacgcttcctgcccaattttattgcctatcctgctgagagtttgttaaaaaaggacaggcaagatgagaatgatcctactatgcctgaattttacagtaaattggttggtgtctatcaagacccggctttgatgcctatcaatttttctgcgaacggtgacagactcaacagccctcttctatccgcttcttcttcaagtcattcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

196

Amino Acids

22.38

Weight (kDa)

7.78

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69450 AT1G69450 AT1G69450
fragaria_vesca	FvH4_4g30740 FvH4_4g30740
malus_domestica	MD13G1068300.v1.1 MD16G1067100.v1.1
prunus_persica	Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1 Prupe.1G279800_v2.0.a1
pyrus_communis	pycom13g06010 pycom16g05850
rosa_chinensis	RchiOBHm_Chr4g0439131
rosa_laevigata	RLG00000006295
rosa_multiflora	Rmu_sc0002236.1_g000001 Rmu_sc0005346.1_g000005 Rmu_sc0027506.1_g000002
rosa_roxburghii	Rroxscaffold_5G00380120
rosa_rugosa	Rorug04G0315900 Rorug04G0315900
rosa_samantha	Rh4AG366800 Rh4BG378300 Rh4CG392400 Rh4CG392500 Rh4DG372900
rosa_wichuraiana	Rw0G007500 Rw0G011730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	221, 567
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	78, 470
AcuI	CTGAAG	1 cut(s)	326
AfaI	GTAC	4 cut(s)	93, 152, 270, 374
AgsI	TTSAA	2 cut(s)	41, 579
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	1 cut(s)	233
ApoI	RAATTY	2 cut(s)	78, 470
Asp700I	GAANNNNTTC	1 cut(s)	386
AspLEI	GCGC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	1 cut(s)	551
BalI	TGGCCA	1 cut(s)	235
BciVI	GTATCC	2 cut(s)	158, 323
BcnI	CCSGG	1 cut(s)	506
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	318
BfuI	GTATCC	2 cut(s)	158, 323
BmcAI	AGTACT	1 cut(s)	374
Bme1390I	CCNGG	1 cut(s)	506
BmrFI	CCNGG	1 cut(s)	506
BmsI	GCATC	2 cut(s)	332, 504
BpuMI	CCSGG	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	518
BsaJI	CCNNGG	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	518
BseDI	CCNNGG	1 cut(s)	206
BseJI	GATNNNNATC	1 cut(s)	518
BseMII	CTCAG	1 cut(s)	408
BshFI	GGCC	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	379, 506
BsnI	GGCC	1 cut(s)	235
Bsp143I	GATC	1 cut(s)	454
BspACI	CCGC	2 cut(s)	221, 567
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	409
BspHI	TCATGA	1 cut(s)	587
BspPI	GGATC	1 cut(s)	449
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	1 cut(s)	454
Bst4CI	ACNGT	3 cut(s)	23, 479, 539
Bst6I	CTCTTC	3 cut(s)	302, 348, 564
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	1 cut(s)	457
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	2 cut(s)	384, 413
BstNSI	RCATGY	2 cut(s)	73, 281
BstSCI	CCNGG	1 cut(s)	504
BstSFI	CTRYAG	1 cut(s)	318
BsuI	GTATCC	2 cut(s)	158, 323
BsuRI	GGCC	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	279
CciI	TCATGA	1 cut(s)	587
CfoI	GCGC	1 cut(s)	205
Csp6I	GTAC	4 cut(s)	92, 151, 269, 373
CviAII	CATG	3 cut(s)	70, 278, 588
CviJI	RGCY	5 cut(s)	50, 122, 235, 509, 555
CviKI_1	RGCY	5 cut(s)	50, 122, 235, 509, 555
CviQI	GTAC	4 cut(s)	92, 151, 269, 373
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	233
Eam1104I	CTCTTC	3 cut(s)	302, 348, 564
EarI	CTCTTC	3 cut(s)	302, 348, 564
Eco57I	CTGAAG	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	279
FaeI	CATG	3 cut(s)	73, 281, 591
FatI	CATG	3 cut(s)	69, 277, 587
FauI	CCCGC	1 cut(s)	214
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	2 cut(s)	379, 506
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	3 cut(s)	73, 281, 591
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	2 cut(s)	294, 546
HpaII	CCGG	2 cut(s)	379, 506
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	2 cut(s)	151, 354
Hpy188III	TCNNGA	2 cut(s)	500, 588
Hpy8I	GTNNAC	2 cut(s)	151, 354
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	3 cut(s)	23, 479, 539
HpyCH4V	TGCA	2 cut(s)	277, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	384, 413
HpyF3I	CTNAG	1 cut(s)	417
Hsp92II	CATG	3 cut(s)	73, 281, 591
HspAI	GCGC	1 cut(s)	203
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	1 cut(s)	127
LweI	GCATC	2 cut(s)	332, 504
MaeI	CTAG	1 cut(s)	119
MaeIII	GTNAC	2 cut(s)	65, 539
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	5 cut(s)	319, 335, 551, 564, 567
MfeI	CAATTG	1 cut(s)	237
MlsI	TGGCCA	1 cut(s)	235
MluCI	AATT	8 cut(s)	78, 129, 237, 247, 397, 470, 482, 523
MluNI	TGGCCA	1 cut(s)	235
MlyI	GAGTC	2 cut(s)	303, 540
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	4 cut(s)	164, 216, 351, 567
Mox20I	TGGCCA	1 cut(s)	235
Mph1103I	ATGCAT	1 cut(s)	279
MroXI	GAANNNNTTC	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	235
MseI	TTAA	2 cut(s)	366, 428
Msp20I	TGGCCA	1 cut(s)	235
MspI	CCGG	2 cut(s)	379, 506
MspR9I	CCNGG	1 cut(s)	506
MunI	CAATTG	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	384, 413
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	3 cut(s)	73, 281, 591
NmuCI	GTSAC	2 cut(s)	65, 539
NsiI	ATGCAT	1 cut(s)	279
NspI	RCATGY	2 cut(s)	73, 281
PaeI	GCATGC	1 cut(s)	281
PagI	TCATGA	1 cut(s)	587
PdmI	GAANNNNTTC	1 cut(s)	386
PleI	GAGTC	2 cut(s)	302, 540
PpsI	GAGTC	2 cut(s)	302, 540
RsaI	GTAC	4 cut(s)	93, 152, 270, 374
RsaNI	GTAC	4 cut(s)	92, 151, 269, 373
SaqAI	TTAA	2 cut(s)	366, 428
Sau3AI	GATC	1 cut(s)	454
ScaI	AGTACT	1 cut(s)	374
SchI	GAGTC	2 cut(s)	303, 540
ScrFI	CCNGG	1 cut(s)	506
SetI	ASST	3 cut(s)	13, 124, 156
SfaNI	GCATC	2 cut(s)	332, 504
SfcI	CTRYAG	1 cut(s)	318
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	8 cut(s)	78, 129, 237, 247, 397, 470, 482, 523
SsiI	CCGC	2 cut(s)	221, 567
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	504
TaaI	ACNGT	3 cut(s)	23, 479, 539
TasI	AATT	8 cut(s)	78, 129, 237, 247, 397, 470, 482, 523
TatI	WGTACW	2 cut(s)	91, 372
Tru1I	TTAA	2 cut(s)	366, 428
Tru9I	TTAA	2 cut(s)	366, 428
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	2 cut(s)	65, 539
Tsp45I	GTSAC	2 cut(s)	65, 539
TspDTI	ATGAA	5 cut(s)	17, 48, 178, 228, 576
TspRI	CASTG	1 cut(s)	309
XapI	RAATTY	2 cut(s)	78, 470
XceI	RCATGY	2 cut(s)	73, 281
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	1 cut(s)	119
ZrmI	AGTACT	1 cut(s)	374
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.